RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 AEBP2Q6ZN18 517 aaPredicted RBP19.99■□□□□ 0.79
VPS53-208ENST00000570650 CHIC1Q5VXU3 224 aa19.34■□□□□ 0.69
VPS53-208ENST00000570650 PHF23Q9BUL5 403 aaPredicted RBP17.04■□□□□ 0.32
VPS53-208ENST00000570650 SENP3Q9H4L4 574 aaPredicted RBP16.9■□□□□ 0.3
VPS53-208ENST00000570650 FOXD1Q16676 465 aa15.76■□□□□ 0.11
VPS53-208ENST00000570650 PLPPR3Q6T4P5 718 aa15.62■□□□□ 0.09
VPS53-208ENST00000570650 PPP6R1Q9UPN7 881 aa15.09■□□□□ 0.01
VPS53-208ENST00000570650 ADRA2BP18089 450 aa15.05■□□□□ -0
VPS53-208ENST00000570650 NISCHQ9Y2I1 1504 aa14.99□□□□□ -0.01
VPS53-208ENST00000570650 PIAS4Q8N2W9 510 aaPredicted RBP14.8□□□□□ -0.04
VPS53-208ENST00000570650 MSH5O43196 834 aa14.51□□□□□ -0.09
VPS53-208ENST00000570650 ABCC9O60706 1549 aa13.91□□□□□ -0.18
VPS53-208ENST00000570650 PPP4R3CPQ6ZMV5 832 aa13.77□□□□□ -0.21
VPS53-208ENST00000570650 MAPK8IP2Q13387 824 aaPredicted RBP13.71□□□□□ -0.21
VPS53-208ENST00000570650 SCAF1Q9H7N4 1312 aaKnown RBP13.66□□□□□ -0.22
VPS53-208ENST00000570650 CCDC180Q9P1Z9 1646 aa13.59□□□□□ -0.23
VPS53-208ENST00000570650 POTEDQ86YR6 584 aa13.51□□□□□ -0.25
VPS53-208ENST00000570650 DMRT2Q9Y5R5 561 aa13.49□□□□□ -0.25
VPS53-208ENST00000570650 CNKSR2Q8WXI2 1034 aa13.39□□□□□ -0.27
VPS53-208ENST00000570650 KCNA4P22459 653 aa13.34□□□□□ -0.27
VPS53-208ENST00000570650 DNAJC5BQ9UF47 199 aa13.33□□□□□ -0.28
VPS53-208ENST00000570650 NCBP3Q53F19 620 aaKnown RBP13.31□□□□□ -0.28
VPS53-208ENST00000570650 NPM3O75607 178 aaKnown RBP13.19□□□□□ -0.3
VPS53-208ENST00000570650 HOXD11P31277 338 aaPredicted RBP13.16□□□□□ -0.3
VPS53-208ENST00000570650 RNF216Q9NWF9 866 aaPredicted RBP13.16□□□□□ -0.3
VPS53-208ENST00000570650 RB1CC1Q8TDY2 1594 aa13.11□□□□□ -0.31
VPS53-208ENST00000570650 NACADO15069 1562 aa12.94□□□□□ -0.34
VPS53-208ENST00000570650 DCAF8L1A6NGE4 600 aa12.91□□□□□ -0.34
VPS53-208ENST00000570650 PABPN1Q86U42 306 aaKnown RBP eCLIP12.9□□□□□ -0.34
VPS53-208ENST00000570650 DCAF8L2P0C7V8 631 aa12.8□□□□□ -0.36
VPS53-208ENST00000570650 UNC13AQ9UPW8 1703 aa12.76□□□□□ -0.37
VPS53-208ENST00000570650 BICRAQ9NZM4 1560 aa12.72□□□□□ -0.37
VPS53-208ENST00000570650 MYO15BQ96JP2 1530 aa12.66□□□□□ -0.38
VPS53-208ENST00000570650 SLC4A1APQ9BWU0 796 aaKnown RBP12.64□□□□□ -0.39
VPS53-208ENST00000570650 CECR2Q9BXF3 1484 aa12.58□□□□□ -0.4
VPS53-208ENST00000570650 SHROOM4Q9ULL8 1493 aa12.55□□□□□ -0.4
VPS53-208ENST00000570650 CC2D2AQ9P2K1 1620 aa12.55□□□□□ -0.4
VPS53-208ENST00000570650 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.52□□□□□ -0.41
VPS53-208ENST00000570650 SLC4A2P04920 1241 aa12.51□□□□□ -0.41
VPS53-208ENST00000570650 DNAJC5Q9H3Z4 198 aa12.5□□□□□ -0.41
VPS53-208ENST00000570650 RNF39Q9H2S5 420 aa12.47□□□□□ -0.41
VPS53-208ENST00000570650 EIF4G1Q04637 1599 aaKnown RBP12.44□□□□□ -0.42
VPS53-208ENST00000570650 DCAF1Q9Y4B6 1507 aa12.37□□□□□ -0.43
VPS53-208ENST00000570650 ZCCHC6Q5VYS8 1495 aaKnown RBP12.36□□□□□ -0.43
VPS53-208ENST00000570650 U3KPZ7 1027 aaPredicted RBP12.35□□□□□ -0.43
VPS53-208ENST00000570650 SCRIBQ14160 1630 aa12.35□□□□□ -0.43
VPS53-208ENST00000570650 ZBTB22O15209 634 aa12.31□□□□□ -0.44
VPS53-208ENST00000570650 C1QBPQ07021 282 aaKnown RBP12.27□□□□□ -0.45
VPS53-208ENST00000570650 FOXD4L1Q9NU39 408 aa12.27□□□□□ -0.45
VPS53-208ENST00000570650 CACNB1Q02641 598 aaPredicted RBP12.22□□□□□ -0.45
VPS53-208ENST00000570650 MYCNP04198 464 aaPredicted RBP12.16□□□□□ -0.46
VPS53-208ENST00000570650 EHMT2Q96KQ7 1210 aa12.16□□□□□ -0.46
VPS53-208ENST00000570650 CUX2O14529 1486 aa12.14□□□□□ -0.47
VPS53-208ENST00000570650 CSRNP3Q8WYN3 585 aa12.09□□□□□ -0.47
VPS53-208ENST00000570650 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.06□□□□□ -0.48
VPS53-208ENST00000570650 HNRNPUL2Q1KMD3 747 aaKnown RBP12.06□□□□□ -0.48
VPS53-208ENST00000570650 SPINK5Q9NQ38 1064 aaPredicted RBP12.06□□□□□ -0.48
VPS53-208ENST00000570650 ERCC6Q03468 1493 aa12.05□□□□□ -0.48
VPS53-208ENST00000570650 SAMD1Q6SPF0 538 aaPredicted RBP12.03□□□□□ -0.48
VPS53-208ENST00000570650 CAPN15O75808 1086 aa11.97□□□□□ -0.49
VPS53-208ENST00000570650 NCAPD3P42695 1498 aa11.95□□□□□ -0.5
VPS53-208ENST00000570650 APLP2Q06481 763 aa11.95□□□□□ -0.5
VPS53-208ENST00000570650 ATF5Q9Y2D1 282 aaPredicted RBP11.92□□□□□ -0.5
VPS53-208ENST00000570650 TRHP20396 242 aaPredicted RBP11.9□□□□□ -0.5
VPS53-208ENST00000570650 ATAD2BQ9ULI0 1458 aa11.87□□□□□ -0.51
VPS53-208ENST00000570650 ZNF219Q9P2Y4 722 aaPredicted RBP11.85□□□□□ -0.51
VPS53-208ENST00000570650 NESP48681 1621 aa11.85□□□□□ -0.51
VPS53-208ENST00000570650 HMGXB3Q12766 1538 aa11.83□□□□□ -0.52
VPS53-208ENST00000570650 ATXN8OSP0DMR3 200 aa11.82□□□□□ -0.52
VPS53-208ENST00000570650 TRIM41Q8WV44 630 aa11.82□□□□□ -0.52
VPS53-208ENST00000570650 SMARCA2P51531 1590 aa11.82□□□□□ -0.52
VPS53-208ENST00000570650 DSG3P32926 999 aa11.81□□□□□ -0.52
VPS53-208ENST00000570650 THOC2Q8NI27 1593 aaKnown RBP11.8□□□□□ -0.52
VPS53-208ENST00000570650 ABCB7O75027 752 aa11.77□□□□□ -0.53
VPS53-208ENST00000570650 SMARCA4P51532 1647 aa11.75□□□□□ -0.53
VPS53-208ENST00000570650 BAZ1BQ9UIG0 1483 aaKnown RBP11.73□□□□□ -0.53
VPS53-208ENST00000570650 LAMC3Q9Y6N6 1575 aa11.73□□□□□ -0.53
VPS53-208ENST00000570650 PDS5BQ9NTI5 1447 aa11.69□□□□□ -0.54
VPS53-208ENST00000570650 POLA2Q14181 598 aa11.67□□□□□ -0.54
VPS53-208ENST00000570650 KIF21AQ7Z4S6 1674 aa11.67□□□□□ -0.54
VPS53-208ENST00000570650 BAZ1AQ9NRL2 1556 aaPredicted RBP11.67□□□□□ -0.54
VPS53-208ENST00000570650 PEG3Q9GZU2 1588 aa11.66□□□□□ -0.54
VPS53-208ENST00000570650 MRC2Q9UBG0 1479 aa11.6□□□□□ -0.55
VPS53-208ENST00000570650 CADPSQ9ULU8 1353 aa11.58□□□□□ -0.56
VPS53-208ENST00000570650 WDR62O43379 1518 aa11.58□□□□□ -0.56
VPS53-208ENST00000570650 MROH2BQ7Z745 1585 aa11.54□□□□□ -0.56
VPS53-208ENST00000570650 OSCARQ8IYS5 282 aa11.53□□□□□ -0.56
VPS53-208ENST00000570650 CEP164Q9UPV0 1460 aa11.49□□□□□ -0.57
VPS53-208ENST00000570650 FANCD2Q9BXW9 1451 aa11.44□□□□□ -0.58
VPS53-208ENST00000570650 ZBTB12Q9Y330 459 aaPredicted RBP11.42□□□□□ -0.58
VPS53-208ENST00000570650 RIMBP3CA6NJZ7 1639 aa11.39□□□□□ -0.59
VPS53-208ENST00000570650 RIMBP3BA6NNM3 1639 aa11.39□□□□□ -0.59
VPS53-208ENST00000570650 RIMBP3Q9UFD9 1639 aa11.39□□□□□ -0.59
VPS53-208ENST00000570650 MKRN4PQ13434 485 aaPredicted RBP11.38□□□□□ -0.59
VPS53-208ENST00000570650 CFTRP13569 1480 aa11.38□□□□□ -0.59
VPS53-208ENST00000570650 WIZO95785 1651 aa11.37□□□□□ -0.59
VPS53-208ENST00000570650 URB2Q14146 1524 aaKnown RBP11.35□□□□□ -0.59
VPS53-208ENST00000570650 ARHGEF11O15085 1522 aa11.34□□□□□ -0.59
VPS53-208ENST00000570650 FBLN2P98095 1184 aa11.33□□□□□ -0.6
VPS53-208ENST00000570650 CYB5RLQ6IPT4 315 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms