RNA–Protein interactions for RNA: ENST00000569899.5

GDE1-205, Transcript of glycerophosphodiester phosphodiesterase 1, humanhuman

TSL 4

Gene GDE1, Length 1,618 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GDE1-205ENST00000569899 URB2Q14146 1524 aaKnown RBP16.67■□□□□ 0.26
GDE1-205ENST00000569899 TOPBP1Q92547 1522 aa16.66■□□□□ 0.26
GDE1-205ENST00000569899 SPDYE4A6NLX3 237 aa16.62■□□□□ 0.25
GDE1-205ENST00000569899 ERCC6Q03468 1493 aa16.62■□□□□ 0.25
GDE1-205ENST00000569899 FGD5Q6ZNL6 1462 aa16.62■□□□□ 0.25
GDE1-205ENST00000569899 MRC2Q9UBG0 1479 aa16.61■□□□□ 0.25
GDE1-205ENST00000569899 THOC2Q8NI27 1593 aaKnown RBP16.61■□□□□ 0.25
GDE1-205ENST00000569899 OSCARQ8IYS5 282 aa16.58■□□□□ 0.24
GDE1-205ENST00000569899 SOGA1O94964 1423 aa16.57■□□□□ 0.24
GDE1-205ENST00000569899 WDR62O43379 1518 aa16.56■□□□□ 0.24
GDE1-205ENST00000569899 POLA1P09884 1462 aaPredicted RBP16.56■□□□□ 0.24
GDE1-205ENST00000569899 RUSC2Q8N2Y8 1516 aa16.54■□□□□ 0.24
GDE1-205ENST00000569899 WDR97A6NE52 1622 aa16.54■□□□□ 0.24
GDE1-205ENST00000569899 FAM9AQ8IZU1 332 aaPredicted RBP16.52■□□□□ 0.23
GDE1-205ENST00000569899 RAD54L2Q9Y4B4 1467 aa16.49■□□□□ 0.23
GDE1-205ENST00000569899 EEA1Q15075 1411 aa16.48■□□□□ 0.23
GDE1-205ENST00000569899 TARBP1Q13395 1621 aaKnown RBP16.46■□□□□ 0.23
GDE1-205ENST00000569899 CUX2O14529 1486 aa16.45■□□□□ 0.22
GDE1-205ENST00000569899 ABCA10Q8WWZ4 1543 aa16.45■□□□□ 0.22
GDE1-205ENST00000569899 SPDYE2BA6NHP3 402 aa16.43■□□□□ 0.22
GDE1-205ENST00000569899 SPDYE6P0CI01 402 aa16.43■□□□□ 0.22
GDE1-205ENST00000569899 SPDYE2Q495Y8 402 aa16.43■□□□□ 0.22
GDE1-205ENST00000569899 KIF27Q86VH2 1401 aa16.41■□□□□ 0.22
GDE1-205ENST00000569899 ABCA5Q8WWZ7 1642 aa16.41■□□□□ 0.22
GDE1-205ENST00000569899 ZNF692Q9BU19 519 aaPredicted RBP16.41■□□□□ 0.22
GDE1-205ENST00000569899 PROM2Q8N271 834 aa16.39■□□□□ 0.21
GDE1-205ENST00000569899 KIF21BO75037 1637 aa16.38■□□□□ 0.21
GDE1-205ENST00000569899 PBRM1Q86U86 1689 aa16.35■□□□□ 0.21
GDE1-205ENST00000569899 IFT140Q96RY7 1462 aa16.35■□□□□ 0.21
GDE1-205ENST00000569899 SSUH2Q9Y2M2 353 aa16.35■□□□□ 0.21
GDE1-205ENST00000569899 LOC105371045A0A1W2PR82 267 aa16.34■□□□□ 0.21
GDE1-205ENST00000569899 EIF4G3O43432 1585 aaKnown RBP16.31■□□□□ 0.2
GDE1-205ENST00000569899 TDRD9Q8NDG6 1382 aaKnown RBP16.3■□□□□ 0.2
GDE1-205ENST00000569899 ZNF608Q9ULD9 1512 aaPredicted RBP16.29■□□□□ 0.2
GDE1-205ENST00000569899 GAPVD1Q14C86 1478 aa16.29■□□□□ 0.2
GDE1-205ENST00000569899 CUL7Q14999 1698 aa16.29■□□□□ 0.2
GDE1-205ENST00000569899 GOLGA3Q08378 1498 aa16.28■□□□□ 0.2
GDE1-205ENST00000569899 PRXQ9BXM0 1461 aa16.28■□□□□ 0.2
GDE1-205ENST00000569899 ERICH3Q5RHP9 1530 aa16.27■□□□□ 0.19
GDE1-205ENST00000569899 RAPGEF2Q9Y4G8 1499 aa16.26■□□□□ 0.19
GDE1-205ENST00000569899 IGF1RP08069 1367 aa16.25■□□□□ 0.19
GDE1-205ENST00000569899 AQRO60306 1485 aaKnown RBP eCLIP16.25■□□□□ 0.19
GDE1-205ENST00000569899 RBM42Q9BTD8 480 aaKnown RBP16.24■□□□□ 0.19
GDE1-205ENST00000569899 ADAMTS12P58397 1594 aa16.21■□□□□ 0.19
GDE1-205ENST00000569899 GRIN2BQ13224 1484 aa16.19■□□□□ 0.18
GDE1-205ENST00000569899 CARMIL1Q5VZK9 1371 aa16.18■□□□□ 0.18
GDE1-205ENST00000569899 TNIKQ9UKE5 1360 aa16.14■□□□□ 0.18
GDE1-205ENST00000569899 SNAPC4Q5SXM2 1469 aa16.14■□□□□ 0.17
GDE1-205ENST00000569899 FBXO3Q9UK99 471 aa16.13■□□□□ 0.17
GDE1-205ENST00000569899 CTTNBP2Q8WZ74 1663 aa16.13■□□□□ 0.17
GDE1-205ENST00000569899 UBTFP17480 764 aaKnown RBP16.12■□□□□ 0.17
GDE1-205ENST00000569899 AKT1S1Q96B36 256 aa16.11■□□□□ 0.17
GDE1-205ENST00000569899 FHAD1B1AJZ9 1412 aa16.1■□□□□ 0.17
GDE1-205ENST00000569899 MAGI1Q96QZ7 1491 aaPredicted RBP16.09■□□□□ 0.17
GDE1-205ENST00000569899 CEP162Q5TB80 1403 aa16.09■□□□□ 0.17
GDE1-205ENST00000569899 CHD1O14646 1710 aa16.03■□□□□ 0.16
GDE1-205ENST00000569899 SYNJ2O15056 1496 aa16.03■□□□□ 0.16
GDE1-205ENST00000569899 GRIN2AQ12879 1464 aa16.02■□□□□ 0.16
GDE1-205ENST00000569899 CLIP1P30622 1438 aa15.99■□□□□ 0.15
GDE1-205ENST00000569899 REM2Q8IYK8 340 aaPredicted RBP15.97■□□□□ 0.15
GDE1-205ENST00000569899 CEP170Q5SW79 1584 aa15.97■□□□□ 0.15
GDE1-205ENST00000569899 VASPP50552 380 aaPredicted RBP15.95■□□□□ 0.14
GDE1-205ENST00000569899 IQGAP2Q13576 1575 aa15.95■□□□□ 0.14
GDE1-205ENST00000569899 RANGAP1P46060 587 aaPredicted RBP15.94■□□□□ 0.14
GDE1-205ENST00000569899 STAG3Q9UJ98 1225 aa15.94■□□□□ 0.14
GDE1-205ENST00000569899 ARHGAP35Q9NRY4 1499 aa15.92■□□□□ 0.14
GDE1-205ENST00000569899 ARAP1Q96P48 1450 aa15.91■□□□□ 0.14
GDE1-205ENST00000569899 CHMP7Q8WUX9 453 aaPredicted RBP15.9■□□□□ 0.14
GDE1-205ENST00000569899 NUP160Q12769 1436 aa15.9■□□□□ 0.14
GDE1-205ENST00000569899 SAMD9Q5K651 1589 aa15.9■□□□□ 0.14
GDE1-205ENST00000569899 SPDYE1Q8NFV5 336 aaPredicted RBP15.9■□□□□ 0.14
GDE1-205ENST00000569899 EFCAB5A4FU69 1503 aa15.89■□□□□ 0.14
GDE1-205ENST00000569899 KIAA0586Q9BVV6 1533 aa15.88■□□□□ 0.13
GDE1-205ENST00000569899 UGGT2Q9NYU1 1516 aa15.84■□□□□ 0.13
GDE1-205ENST00000569899 VPS8Q8N3P4 1428 aa15.84■□□□□ 0.13
GDE1-205ENST00000569899 CLEC11AQ9Y240 323 aa15.83■□□□□ 0.12
GDE1-205ENST00000569899 FHOD3Q2V2M9 1422 aa15.81■□□□□ 0.12
GDE1-205ENST00000569899 KIAA0556O60303 1618 aa15.81■□□□□ 0.12
GDE1-205ENST00000569899 PITPNM1O00562 1244 aa15.8■□□□□ 0.12
GDE1-205ENST00000569899 PCF11O94913 1555 aaKnown RBP15.78■□□□□ 0.12
GDE1-205ENST00000569899 CLASP1Q7Z460 1538 aa15.78■□□□□ 0.12
GDE1-205ENST00000569899 SHROOM2Q13796 1616 aa15.77■□□□□ 0.12
GDE1-205ENST00000569899 DISP1Q96F81 1524 aa15.77■□□□□ 0.12
GDE1-205ENST00000569899 IFNLR1Q8IU57 520 aaPredicted RBP15.76■□□□□ 0.11
GDE1-205ENST00000569899 P3H3Q8IVL6 736 aa15.76■□□□□ 0.11
GDE1-205ENST00000569899 MIER1Q8N108 512 aa15.73■□□□□ 0.11
GDE1-205ENST00000569899 PLCD3Q8N3E9 789 aa15.72■□□□□ 0.11
GDE1-205ENST00000569899 PRR29P0C7W0 189 aa15.71■□□□□ 0.11
GDE1-205ENST00000569899 LRRIQ1Q96JM4 1722 aa15.7■□□□□ 0.1
GDE1-205ENST00000569899 FMN1Q68DA7 1419 aa15.69■□□□□ 0.1
GDE1-205ENST00000569899 CFAP43Q8NDM7 1665 aa15.69■□□□□ 0.1
GDE1-205ENST00000569899 FYCO1Q9BQS8 1478 aa15.68■□□□□ 0.1
GDE1-205ENST00000569899 JPH4Q96JJ6 628 aa15.68■□□□□ 0.1
GDE1-205ENST00000569899 ERCC6L2Q5T890 1561 aa15.67■□□□□ 0.1
GDE1-205ENST00000569899 CARMIL2Q6F5E8 1435 aa15.66■□□□□ 0.1
GDE1-205ENST00000569899 RTN4Q9NQC3 1192 aaKnown RBP15.66■□□□□ 0.1
GDE1-205ENST00000569899 PRG4Q92954 1404 aaPredicted RBP15.66■□□□□ 0.1
GDE1-205ENST00000569899 AMER1Q5JTC6 1135 aaPredicted RBP15.65■□□□□ 0.1
GDE1-205ENST00000569899 CASKIN1Q8WXD9 1431 aa15.65■□□□□ 0.1
GDE1-205ENST00000569899 HECW1Q76N89 1606 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms