RNA–Protein interactions for RNA: ENST00000569899.5

GDE1-205, Transcript of glycerophosphodiester phosphodiesterase 1, humanhuman

TSL 4

Gene GDE1, Length 1,618 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GDE1-205ENST00000569899 AEBP2Q6ZN18 517 aaPredicted RBP28.94■■■□□ 2.22
GDE1-205ENST00000569899 CHIC1Q5VXU3 224 aa28.41■■■□□ 2.14
GDE1-205ENST00000569899 PHF23Q9BUL5 403 aaPredicted RBP25.05■■□□□ 1.6
GDE1-205ENST00000569899 SENP3Q9H4L4 574 aaPredicted RBP24.46■■□□□ 1.51
GDE1-205ENST00000569899 NISCHQ9Y2I1 1504 aa23.19■■□□□ 1.3
GDE1-205ENST00000569899 PLPPR3Q6T4P5 718 aa23.13■■□□□ 1.29
GDE1-205ENST00000569899 FOXD1Q16676 465 aa22.72■■□□□ 1.23
GDE1-205ENST00000569899 PPP6R1Q9UPN7 881 aa22.04■■□□□ 1.12
GDE1-205ENST00000569899 ADRA2BP18089 450 aa22.02■■□□□ 1.12
GDE1-205ENST00000569899 PIAS4Q8N2W9 510 aaPredicted RBP21.46■■□□□ 1.03
GDE1-205ENST00000569899 MSH5O43196 834 aa20.82■□□□□ 0.92
GDE1-205ENST00000569899 PPP4R3CPQ6ZMV5 832 aa20.44■□□□□ 0.86
GDE1-205ENST00000569899 CCDC180Q9P1Z9 1646 aa20.41■□□□□ 0.86
GDE1-205ENST00000569899 KCNA4P22459 653 aa20.2■□□□□ 0.82
GDE1-205ENST00000569899 SCAF1Q9H7N4 1312 aaKnown RBP20.07■□□□□ 0.8
GDE1-205ENST00000569899 MAPK8IP2Q13387 824 aaPredicted RBP19.94■□□□□ 0.78
GDE1-205ENST00000569899 NCBP3Q53F19 620 aaKnown RBP19.91■□□□□ 0.78
GDE1-205ENST00000569899 CNKSR2Q8WXI2 1034 aa19.8■□□□□ 0.76
GDE1-205ENST00000569899 NPM3O75607 178 aaKnown RBP19.67■□□□□ 0.74
GDE1-205ENST00000569899 DMRT2Q9Y5R5 561 aa19.58■□□□□ 0.72
GDE1-205ENST00000569899 ZCCHC6Q5VYS8 1495 aaKnown RBP19.48■□□□□ 0.71
GDE1-205ENST00000569899 ABCC9O60706 1549 aa19.38■□□□□ 0.69
GDE1-205ENST00000569899 RNF216Q9NWF9 866 aaPredicted RBP19.36■□□□□ 0.69
GDE1-205ENST00000569899 SLC4A1APQ9BWU0 796 aaKnown RBP19.25■□□□□ 0.67
GDE1-205ENST00000569899 HOXD11P31277 338 aaPredicted RBP19.25■□□□□ 0.67
GDE1-205ENST00000569899 DCAF1Q9Y4B6 1507 aa19.17■□□□□ 0.66
GDE1-205ENST00000569899 DCAF8L2P0C7V8 631 aa19.07■□□□□ 0.64
GDE1-205ENST00000569899 DNAJC5BQ9UF47 199 aa19.04■□□□□ 0.64
GDE1-205ENST00000569899 MYO15BQ96JP2 1530 aa19■□□□□ 0.63
GDE1-205ENST00000569899 NACADO15069 1562 aa18.97■□□□□ 0.63
GDE1-205ENST00000569899 EHMT2Q96KQ7 1210 aa18.95■□□□□ 0.62
GDE1-205ENST00000569899 RB1CC1Q8TDY2 1594 aa18.87■□□□□ 0.61
GDE1-205ENST00000569899 SHROOM4Q9ULL8 1493 aa18.75■□□□□ 0.59
GDE1-205ENST00000569899 SCRIBQ14160 1630 aa18.71■□□□□ 0.59
GDE1-205ENST00000569899 DCAF8L1A6NGE4 600 aa18.71■□□□□ 0.59
GDE1-205ENST00000569899 POTEDQ86YR6 584 aa18.66■□□□□ 0.58
GDE1-205ENST00000569899 CSRNP3Q8WYN3 585 aa18.65■□□□□ 0.58
GDE1-205ENST00000569899 ZBTB22O15209 634 aa18.63■□□□□ 0.57
GDE1-205ENST00000569899 UNC13AQ9UPW8 1703 aa18.62■□□□□ 0.57
GDE1-205ENST00000569899 SLC4A2P04920 1241 aa18.54■□□□□ 0.56
GDE1-205ENST00000569899 FOXD4L1Q9NU39 408 aa18.5■□□□□ 0.55
GDE1-205ENST00000569899 BICRAQ9NZM4 1560 aa18.33■□□□□ 0.53
GDE1-205ENST00000569899 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.33■□□□□ 0.52
GDE1-205ENST00000569899 PABPN1Q86U42 306 aaKnown RBP eCLIP18.16■□□□□ 0.5
GDE1-205ENST00000569899 MYCNP04198 464 aaPredicted RBP18.15■□□□□ 0.5
GDE1-205ENST00000569899 U3KPZ7 1027 aaPredicted RBP18.09■□□□□ 0.49
GDE1-205ENST00000569899 CECR2Q9BXF3 1484 aa18.03■□□□□ 0.48
GDE1-205ENST00000569899 BAZ1AQ9NRL2 1556 aaPredicted RBP17.93■□□□□ 0.46
GDE1-205ENST00000569899 MROH2BQ7Z745 1585 aa17.92■□□□□ 0.46
GDE1-205ENST00000569899 SMARCA4P51532 1647 aa17.92■□□□□ 0.46
GDE1-205ENST00000569899 RNF39Q9H2S5 420 aa17.9■□□□□ 0.46
GDE1-205ENST00000569899 SUPT5HO00267 1087 aaKnown RBP17.88■□□□□ 0.45
GDE1-205ENST00000569899 RSF1Q96T23 1441 aaPredicted RBP17.88■□□□□ 0.45
GDE1-205ENST00000569899 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.86■□□□□ 0.45
GDE1-205ENST00000569899 HNRNPUL2Q1KMD3 747 aaKnown RBP17.86■□□□□ 0.45
GDE1-205ENST00000569899 ATXN8OSP0DMR3 200 aa17.83■□□□□ 0.44
GDE1-205ENST00000569899 SAMD1Q6SPF0 538 aaPredicted RBP17.83■□□□□ 0.44
GDE1-205ENST00000569899 WIZO95785 1651 aa17.82■□□□□ 0.44
GDE1-205ENST00000569899 EIF4G1Q04637 1599 aaKnown RBP17.78■□□□□ 0.44
GDE1-205ENST00000569899 ATF5Q9Y2D1 282 aaPredicted RBP17.71■□□□□ 0.43
GDE1-205ENST00000569899 PEG3Q9GZU2 1588 aa17.69■□□□□ 0.42
GDE1-205ENST00000569899 C1QBPQ07021 282 aaKnown RBP17.66■□□□□ 0.42
GDE1-205ENST00000569899 SMARCA2P51531 1590 aa17.61■□□□□ 0.41
GDE1-205ENST00000569899 APLP2Q06481 763 aa17.61■□□□□ 0.41
GDE1-205ENST00000569899 ATAD2BQ9ULI0 1458 aa17.61■□□□□ 0.41
GDE1-205ENST00000569899 TOP2AP11388 1531 aaKnown RBP17.6■□□□□ 0.41
GDE1-205ENST00000569899 CC2D2AQ9P2K1 1620 aa17.57■□□□□ 0.4
GDE1-205ENST00000569899 SPINK5Q9NQ38 1064 aaPredicted RBP17.54■□□□□ 0.4
GDE1-205ENST00000569899 BAZ1BQ9UIG0 1483 aaKnown RBP17.51■□□□□ 0.39
GDE1-205ENST00000569899 HMGXB3Q12766 1538 aa17.5■□□□□ 0.39
GDE1-205ENST00000569899 NCAPD3P42695 1498 aa17.46■□□□□ 0.39
GDE1-205ENST00000569899 CAPN15O75808 1086 aa17.42■□□□□ 0.38
GDE1-205ENST00000569899 TRHP20396 242 aaPredicted RBP17.39■□□□□ 0.38
GDE1-205ENST00000569899 ZNF219Q9P2Y4 722 aaPredicted RBP17.37■□□□□ 0.37
GDE1-205ENST00000569899 CCDC88BA6NC98 1476 aa17.36■□□□□ 0.37
GDE1-205ENST00000569899 CACNB1Q02641 598 aaPredicted RBP17.28■□□□□ 0.36
GDE1-205ENST00000569899 POLA2Q14181 598 aa17.16■□□□□ 0.34
GDE1-205ENST00000569899 ABCB7O75027 752 aa17.14■□□□□ 0.33
GDE1-205ENST00000569899 PRDM2Q13029 1718 aa17.12■□□□□ 0.33
GDE1-205ENST00000569899 DSG3P32926 999 aa17.1■□□□□ 0.33
GDE1-205ENST00000569899 CFTRP13569 1480 aa17.04■□□□□ 0.32
GDE1-205ENST00000569899 ABCC8Q09428 1581 aa17■□□□□ 0.31
GDE1-205ENST00000569899 CADPSQ9ULU8 1353 aa16.97■□□□□ 0.31
GDE1-205ENST00000569899 NESP48681 1621 aa16.97■□□□□ 0.31
GDE1-205ENST00000569899 LAMC3Q9Y6N6 1575 aa16.97■□□□□ 0.31
GDE1-205ENST00000569899 MKRN4PQ13434 485 aaPredicted RBP16.94■□□□□ 0.3
GDE1-205ENST00000569899 FBLN2P98095 1184 aa16.88■□□□□ 0.29
GDE1-205ENST00000569899 SYNJ1O43426 1573 aa16.86■□□□□ 0.29
GDE1-205ENST00000569899 KIF21AQ7Z4S6 1674 aa16.85■□□□□ 0.29
GDE1-205ENST00000569899 ZBTB12Q9Y330 459 aaPredicted RBP16.85■□□□□ 0.29
GDE1-205ENST00000569899 WRNQ14191 1432 aaPredicted RBP eCLIP16.84■□□□□ 0.29
GDE1-205ENST00000569899 FANCD2Q9BXW9 1451 aa16.84■□□□□ 0.29
GDE1-205ENST00000569899 FKBP8Q14318 412 aa16.83■□□□□ 0.28
GDE1-205ENST00000569899 BIVM-ERCC5R4GMW8 1640 aa16.82■□□□□ 0.28
GDE1-205ENST00000569899 TRIM41Q8WV44 630 aa16.81■□□□□ 0.28
GDE1-205ENST00000569899 TOP2BQ02880 1626 aa16.79■□□□□ 0.28
GDE1-205ENST00000569899 CUX1P39880 1505 aa16.79■□□□□ 0.28
GDE1-205ENST00000569899 CEP164Q9UPV0 1460 aa16.77■□□□□ 0.28
GDE1-205ENST00000569899 PDS5BQ9NTI5 1447 aa16.76■□□□□ 0.27
GDE1-205ENST00000569899 DNMBPQ6XZF7 1577 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms