RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 RRBP1Q9P2E9 1410 aaKnown RBP19.66■□□□□ 0.74
CLK3-215ENST00000564353 RAB3GAP2Q9H2M9 1393 aa19.63■□□□□ 0.73
CLK3-215ENST00000564353 SIN3AQ96ST3 1273 aa19.63■□□□□ 0.73
CLK3-215ENST00000564353 PHLDB1Q86UU1 1377 aa19.61■□□□□ 0.73
CLK3-215ENST00000564353 FHOD3Q2V2M9 1422 aa19.61■□□□□ 0.73
CLK3-215ENST00000564353 HIRIP3Q9BW71 556 aaPredicted RBP19.6■□□□□ 0.73
CLK3-215ENST00000564353 TOPBP1Q92547 1522 aa19.58■□□□□ 0.72
CLK3-215ENST00000564353 POLA1P09884 1462 aaPredicted RBP19.56■□□□□ 0.72
CLK3-215ENST00000564353 KCNH8Q96L42 1107 aa19.56■□□□□ 0.72
CLK3-215ENST00000564353 CLSPNQ9HAW4 1339 aa19.55■□□□□ 0.72
CLK3-215ENST00000564353 DNMBPQ6XZF7 1577 aa19.52■□□□□ 0.72
CLK3-215ENST00000564353 URB2Q14146 1524 aaKnown RBP19.52■□□□□ 0.71
CLK3-215ENST00000564353 LRRC9Q6ZRR7 1453 aa19.51■□□□□ 0.71
CLK3-215ENST00000564353 TIAM1Q13009 1591 aa19.51■□□□□ 0.71
CLK3-215ENST00000564353 TDRD9Q8NDG6 1382 aaKnown RBP19.51■□□□□ 0.71
CLK3-215ENST00000564353 ARID3CA6NKF2 412 aa19.49■□□□□ 0.71
CLK3-215ENST00000564353 LAMC3Q9Y6N6 1575 aa19.48■□□□□ 0.71
CLK3-215ENST00000564353 SETD5Q9C0A6 1442 aa19.46■□□□□ 0.71
CLK3-215ENST00000564353 PCF11O94913 1555 aaKnown RBP19.45■□□□□ 0.7
CLK3-215ENST00000564353 PDS5BQ9NTI5 1447 aa19.44■□□□□ 0.7
CLK3-215ENST00000564353 DDX10Q13206 875 aaKnown RBP19.44■□□□□ 0.7
CLK3-215ENST00000564353 ABCA10Q8WWZ4 1543 aa19.44■□□□□ 0.7
CLK3-215ENST00000564353 MAPKBP1O60336 1514 aa19.43■□□□□ 0.7
CLK3-215ENST00000564353 FHAD1B1AJZ9 1412 aa19.41■□□□□ 0.7
CLK3-215ENST00000564353 KIF21AQ7Z4S6 1674 aa19.37■□□□□ 0.69
CLK3-215ENST00000564353 PRKCSHP14314 528 aaPredicted RBP19.37■□□□□ 0.69
CLK3-215ENST00000564353 MTUS2Q5JR59 1369 aa19.33■□□□□ 0.69
CLK3-215ENST00000564353 CHIC2Q9UKJ5 165 aa19.33■□□□□ 0.69
CLK3-215ENST00000564353 WDR97A6NE52 1622 aa19.32■□□□□ 0.68
CLK3-215ENST00000564353 BCL11AQ9H165 835 aa19.3■□□□□ 0.68
CLK3-215ENST00000564353 GAPVD1Q14C86 1478 aa19.28■□□□□ 0.68
CLK3-215ENST00000564353 MAP3K1Q13233 1512 aa19.27■□□□□ 0.68
CLK3-215ENST00000564353 RRP7BPQ9NSQ0 103 aa19.27■□□□□ 0.68
CLK3-215ENST00000564353 SUPT16HQ9Y5B9 1047 aaKnown RBP19.27■□□□□ 0.68
CLK3-215ENST00000564353 BCANQ96GW7 911 aa19.27■□□□□ 0.67
CLK3-215ENST00000564353 CASKIN1Q8WXD9 1431 aa19.27■□□□□ 0.67
CLK3-215ENST00000564353 PTPRKQ15262 1439 aa19.25■□□□□ 0.67
CLK3-215ENST00000564353 AQRO60306 1485 aaKnown RBP eCLIP19.25■□□□□ 0.67
CLK3-215ENST00000564353 FYCO1Q9BQS8 1478 aa19.24■□□□□ 0.67
CLK3-215ENST00000564353 FGD6Q6ZV73 1430 aa19.22■□□□□ 0.67
CLK3-215ENST00000564353 CFAP43Q8NDM7 1665 aa19.22■□□□□ 0.67
CLK3-215ENST00000564353 PPP1R15AO75807 674 aaPredicted RBP19.21■□□□□ 0.67
CLK3-215ENST00000564353 FMN1Q68DA7 1419 aa19.21■□□□□ 0.67
CLK3-215ENST00000564353 TRIM52Q96A61 297 aa19.2■□□□□ 0.66
CLK3-215ENST00000564353 ABCA5Q8WWZ7 1642 aa19.19■□□□□ 0.66
CLK3-215ENST00000564353 TONSLQ96HA7 1378 aa19.18■□□□□ 0.66
CLK3-215ENST00000564353 CUL7Q14999 1698 aa19.18■□□□□ 0.66
CLK3-215ENST00000564353 TARBP1Q13395 1621 aaKnown RBP19.18■□□□□ 0.66
CLK3-215ENST00000564353 SNAPC4Q5SXM2 1469 aa19.17■□□□□ 0.66
CLK3-215ENST00000564353 FOXD1Q16676 465 aa19.16■□□□□ 0.66
CLK3-215ENST00000564353 EFCAB5A4FU69 1503 aa19.16■□□□□ 0.66
CLK3-215ENST00000564353 MRC2Q9UBG0 1479 aa19.15■□□□□ 0.66
CLK3-215ENST00000564353 CCDC18Q5T9S5 1454 aa19.14■□□□□ 0.66
CLK3-215ENST00000564353 NCOA2Q15596 1464 aa19.14■□□□□ 0.65
CLK3-215ENST00000564353 CTTNBP2Q8WZ74 1663 aa19.13■□□□□ 0.65
CLK3-215ENST00000564353 ZNF608Q9ULD9 1512 aaPredicted RBP19.12■□□□□ 0.65
CLK3-215ENST00000564353 ANP32CO43423 234 aa19.07■□□□□ 0.64
CLK3-215ENST00000564353 FKBP8Q14318 412 aa19.07■□□□□ 0.64
CLK3-215ENST00000564353 MYOM3Q5VTT5 1437 aa19.07■□□□□ 0.64
CLK3-215ENST00000564353 NAIPQ13075 1403 aa19.06■□□□□ 0.64
CLK3-215ENST00000564353 LRRIQ1Q96JM4 1722 aa19.05■□□□□ 0.64
CLK3-215ENST00000564353 MAGI3Q5TCQ9 1506 aa19.05■□□□□ 0.64
CLK3-215ENST00000564353 GRIN2BQ13224 1484 aa19.05■□□□□ 0.64
CLK3-215ENST00000564353 ERCC6Q03468 1493 aa19.04■□□□□ 0.64
CLK3-215ENST00000564353 HFM1A2PYH4 1435 aa19.04■□□□□ 0.64
CLK3-215ENST00000564353 CNGB1Q14028 1251 aaPredicted RBP19.02■□□□□ 0.64
CLK3-215ENST00000564353 CDK13Q14004 1512 aaKnown RBP19.02■□□□□ 0.64
CLK3-215ENST00000564353 UACAQ9BZF9 1416 aa19.02■□□□□ 0.63
CLK3-215ENST00000564353 ZNF644Q9H582 1327 aaPredicted RBP19.01■□□□□ 0.63
CLK3-215ENST00000564353 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19■□□□□ 0.63
CLK3-215ENST00000564353 PTPN23Q9H3S7 1636 aa19■□□□□ 0.63
CLK3-215ENST00000564353 FBLN2P98095 1184 aa19■□□□□ 0.63
CLK3-215ENST00000564353 SAMD9Q5K651 1589 aa19■□□□□ 0.63
CLK3-215ENST00000564353 TIMELESSQ9UNS1 1208 aa19■□□□□ 0.63
CLK3-215ENST00000564353 PBRM1Q86U86 1689 aa18.98■□□□□ 0.63
CLK3-215ENST00000564353 IFT140Q96RY7 1462 aa18.96■□□□□ 0.63
CLK3-215ENST00000564353 WDR62O43379 1518 aa18.96■□□□□ 0.63
CLK3-215ENST00000564353 HSPA5P11021 654 aaKnown RBP18.95■□□□□ 0.62
CLK3-215ENST00000564353 ZNF777Q9ULD5 760 aaPredicted RBP18.94■□□□□ 0.62
CLK3-215ENST00000564353 MPHOSPH9Q99550 1183 aa18.93■□□□□ 0.62
CLK3-215ENST00000564353 TSHZ2Q9NRE2 1034 aa18.93■□□□□ 0.62
CLK3-215ENST00000564353 SUPT6HQ7KZ85 1726 aaKnown RBP18.93■□□□□ 0.62
CLK3-215ENST00000564353 ADAMTS12P58397 1594 aa18.92■□□□□ 0.62
CLK3-215ENST00000564353 KDM6BO15054 1643 aa18.92■□□□□ 0.62
CLK3-215ENST00000564353 IRX6P78412 446 aaPredicted RBP18.92■□□□□ 0.62
CLK3-215ENST00000564353 EHBP1L1Q8N3D4 1523 aa18.92■□□□□ 0.62
CLK3-215ENST00000564353 EPRSP07814 1512 aaKnown RBP18.91■□□□□ 0.62
CLK3-215ENST00000564353 L3MBTL2Q969R5 705 aa18.91■□□□□ 0.62
CLK3-215ENST00000564353 UGGT2Q9NYU1 1516 aa18.9■□□□□ 0.62
CLK3-215ENST00000564353 HNRNPUQ00839 825 aaKnown RBP eCLIP18.88■□□□□ 0.61
CLK3-215ENST00000564353 WASHC2AQ641Q2 1341 aa18.88■□□□□ 0.61
CLK3-215ENST00000564353 THOC2Q8NI27 1593 aaKnown RBP18.88■□□□□ 0.61
CLK3-215ENST00000564353 CHMP7Q8WUX9 453 aaPredicted RBP18.88■□□□□ 0.61
CLK3-215ENST00000564353 IQGAP2Q13576 1575 aa18.87■□□□□ 0.61
CLK3-215ENST00000564353 ZNF326Q5BKZ1 582 aaKnown RBP18.87■□□□□ 0.61
CLK3-215ENST00000564353 DENND4BO75064 1496 aaPredicted RBP18.86■□□□□ 0.61
CLK3-215ENST00000564353 C11orf95C9JLR9 678 aaPredicted RBP18.86■□□□□ 0.61
CLK3-215ENST00000564353 CCDC184Q52MB2 194 aa18.86■□□□□ 0.61
CLK3-215ENST00000564353 POLR3GLQ9BT43 218 aa18.86■□□□□ 0.61
CLK3-215ENST00000564353 SENP3-EIF4A1A0A087X0R7 540 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms