RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 GOLGA3Q08378 1498 aa8.07□□□□□ -1.12
VPS13C-209ENST00000560637 CDK11AQ9UQ88 783 aaPredicted RBP8.07□□□□□ -1.12
VPS13C-209ENST00000560637 NEUROD1Q13562 356 aa8.06□□□□□ -1.12
VPS13C-209ENST00000560637 URB2Q14146 1524 aaKnown RBP8.06□□□□□ -1.12
VPS13C-209ENST00000560637 JPH4Q96JJ6 628 aa8.05□□□□□ -1.12
VPS13C-209ENST00000560637 POLR3GLQ9BT43 218 aa8.05□□□□□ -1.12
VPS13C-209ENST00000560637 MTUS2Q5JR59 1369 aa8.05□□□□□ -1.12
VPS13C-209ENST00000560637 RTN4Q9NQC3 1192 aaKnown RBP8.05□□□□□ -1.12
VPS13C-209ENST00000560637 RAPGEF2Q9Y4G8 1499 aa8.04□□□□□ -1.12
VPS13C-209ENST00000560637 OSCARQ8IYS5 282 aa8.04□□□□□ -1.12
VPS13C-209ENST00000560637 PLEKHD1A6NEE1 506 aa8.03□□□□□ -1.12
VPS13C-209ENST00000560637 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.03□□□□□ -1.12
VPS13C-209ENST00000560637 EEA1Q15075 1411 aa8.03□□□□□ -1.12
VPS13C-209ENST00000560637 TOPBP1Q92547 1522 aa8.03□□□□□ -1.12
VPS13C-209ENST00000560637 ZNF326Q5BKZ1 582 aaKnown RBP8.02□□□□□ -1.12
VPS13C-209ENST00000560637 IGF1RP08069 1367 aa8.02□□□□□ -1.13
VPS13C-209ENST00000560637 GAPVD1Q14C86 1478 aa8.01□□□□□ -1.13
VPS13C-209ENST00000560637 SYNJ1O43426 1573 aa8.01□□□□□ -1.13
VPS13C-209ENST00000560637 TNIKQ9UKE5 1360 aa8□□□□□ -1.13
VPS13C-209ENST00000560637 KANK4Q5T7N3 995 aaPredicted RBP8□□□□□ -1.13
VPS13C-209ENST00000560637 FHOD3Q2V2M9 1422 aa8□□□□□ -1.13
VPS13C-209ENST00000560637 RRP7BPQ9NSQ0 103 aa8□□□□□ -1.13
VPS13C-209ENST00000560637 POLA1P09884 1462 aaPredicted RBP8□□□□□ -1.13
VPS13C-209ENST00000560637 CUX1P39880 1505 aa7.99□□□□□ -1.13
VPS13C-209ENST00000560637 EIF4G3O43432 1585 aaKnown RBP7.97□□□□□ -1.13
VPS13C-209ENST00000560637 ZNF608Q9ULD9 1512 aaPredicted RBP7.97□□□□□ -1.13
VPS13C-209ENST00000560637 TARBP1Q13395 1621 aaKnown RBP7.96□□□□□ -1.14
VPS13C-209ENST00000560637 CFDP1Q9UEE9 299 aaPredicted RBP7.96□□□□□ -1.14
VPS13C-209ENST00000560637 CHGAP10645 457 aaKnown RBP7.96□□□□□ -1.14
VPS13C-209ENST00000560637 MAGI1Q96QZ7 1491 aaPredicted RBP7.95□□□□□ -1.14
VPS13C-209ENST00000560637 MLECQ14165 292 aa7.94□□□□□ -1.14
VPS13C-209ENST00000560637 TSPY4P0CV99 314 aa7.94□□□□□ -1.14
VPS13C-209ENST00000560637 TSPY10P0CW01 314 aa7.94□□□□□ -1.14
VPS13C-209ENST00000560637 ARID4BQ4LE39 1312 aaPredicted RBP7.93□□□□□ -1.14
VPS13C-209ENST00000560637 BCANQ96GW7 911 aa7.93□□□□□ -1.14
VPS13C-209ENST00000560637 RIMBP3CA6NJZ7 1639 aa7.93□□□□□ -1.14
VPS13C-209ENST00000560637 RIMBP3BA6NNM3 1639 aa7.93□□□□□ -1.14
VPS13C-209ENST00000560637 RIMBP3Q9UFD9 1639 aa7.93□□□□□ -1.14
VPS13C-209ENST00000560637 ESF1Q9H501 851 aaKnown RBP7.92□□□□□ -1.14
VPS13C-209ENST00000560637 CARMIL2Q6F5E8 1435 aa7.91□□□□□ -1.14
VPS13C-209ENST00000560637 SNAPC4Q5SXM2 1469 aa7.91□□□□□ -1.14
VPS13C-209ENST00000560637 GRIN2BQ13224 1484 aa7.91□□□□□ -1.14
VPS13C-209ENST00000560637 SLC4A1APQ9BWU0 796 aaKnown RBP7.9□□□□□ -1.14
VPS13C-209ENST00000560637 ARHGEF11O15085 1522 aa7.9□□□□□ -1.14
VPS13C-209ENST00000560637 CHD1O14646 1710 aa7.9□□□□□ -1.15
VPS13C-209ENST00000560637 PTPRGP23470 1445 aa7.89□□□□□ -1.15
VPS13C-209ENST00000560637 CLASP1Q7Z460 1538 aa7.87□□□□□ -1.15
VPS13C-209ENST00000560637 SYNJ2O15056 1496 aa7.87□□□□□ -1.15
VPS13C-209ENST00000560637 STAG3Q9UJ98 1225 aa7.86□□□□□ -1.15
VPS13C-209ENST00000560637 ABCA10Q8WWZ4 1543 aa7.86□□□□□ -1.15
VPS13C-209ENST00000560637 HNRNPMP52272 730 aaKnown RBP eCLIP7.86□□□□□ -1.15
VPS13C-209ENST00000560637 YTHDC1Q96MU7 727 aaKnown RBP7.86□□□□□ -1.15
VPS13C-209ENST00000560637 FHAD1B1AJZ9 1412 aa7.86□□□□□ -1.15
VPS13C-209ENST00000560637 HRCP23327 699 aa7.85□□□□□ -1.15
VPS13C-209ENST00000560637 KDM2AQ9Y2K7 1162 aa7.85□□□□□ -1.15
VPS13C-209ENST00000560637 TOP2BQ02880 1626 aa7.85□□□□□ -1.15
VPS13C-209ENST00000560637 CCNB3Q8WWL7 1395 aa7.85□□□□□ -1.15
VPS13C-209ENST00000560637 ZEB1P37275 1124 aaPredicted RBP7.85□□□□□ -1.15
VPS13C-209ENST00000560637 PBRM1Q86U86 1689 aa7.85□□□□□ -1.15
VPS13C-209ENST00000560637 VPS8Q8N3P4 1428 aa7.85□□□□□ -1.15
VPS13C-209ENST00000560637 PRG4Q92954 1404 aaPredicted RBP7.85□□□□□ -1.15
VPS13C-209ENST00000560637 RGL3Q3MIN7 710 aa7.84□□□□□ -1.15
VPS13C-209ENST00000560637 FAM69CQ0P6D2 419 aa7.84□□□□□ -1.15
VPS13C-209ENST00000560637 GGT6Q6P531 493 aa7.84□□□□□ -1.15
VPS13C-209ENST00000560637 HIRIP3Q9BW71 556 aaPredicted RBP7.84□□□□□ -1.15
VPS13C-209ENST00000560637 ABCA5Q8WWZ7 1642 aa7.84□□□□□ -1.15
VPS13C-209ENST00000560637 BIVM-ERCC5R4GMW8 1640 aa7.84□□□□□ -1.15
VPS13C-209ENST00000560637 FOXD1Q16676 465 aa7.83□□□□□ -1.16
VPS13C-209ENST00000560637 ZNF644Q9H582 1327 aaPredicted RBP7.83□□□□□ -1.16
VPS13C-209ENST00000560637 ADRA2BP18089 450 aa7.81□□□□□ -1.16
VPS13C-209ENST00000560637 ERICH3Q5RHP9 1530 aa7.81□□□□□ -1.16
VPS13C-209ENST00000560637 FMN1Q68DA7 1419 aa7.81□□□□□ -1.16
VPS13C-209ENST00000560637 PLEKHG5O94827 1062 aa7.8□□□□□ -1.16
VPS13C-209ENST00000560637 ARAP1Q96P48 1450 aa7.8□□□□□ -1.16
VPS13C-209ENST00000560637 SIN3AQ96ST3 1273 aa7.79□□□□□ -1.16
VPS13C-209ENST00000560637 ADAMTS12P58397 1594 aa7.79□□□□□ -1.16
VPS13C-209ENST00000560637 PRXQ9BXM0 1461 aa7.79□□□□□ -1.16
VPS13C-209ENST00000560637 EFCAB2Q5VUJ9 269 aa7.78□□□□□ -1.16
VPS13C-209ENST00000560637 NUP160Q12769 1436 aa7.76□□□□□ -1.17
VPS13C-209ENST00000560637 GRIN2AQ12879 1464 aa7.76□□□□□ -1.17
VPS13C-209ENST00000560637 SHROOM2Q13796 1616 aa7.76□□□□□ -1.17
VPS13C-209ENST00000560637 ARHGAP35Q9NRY4 1499 aa7.76□□□□□ -1.17
VPS13C-209ENST00000560637 KIF3BO15066 747 aa7.75□□□□□ -1.17
VPS13C-209ENST00000560637 AMER1Q5JTC6 1135 aaPredicted RBP7.75□□□□□ -1.17
VPS13C-209ENST00000560637 AFAP1Q8N556 730 aa7.75□□□□□ -1.17
VPS13C-209ENST00000560637 NUTM2DQ5VT03 806 aaPredicted RBP7.74□□□□□ -1.17
VPS13C-209ENST00000560637 PLB1Q6P1J6 1458 aa7.73□□□□□ -1.17
VPS13C-209ENST00000560637 CUL7Q14999 1698 aa7.73□□□□□ -1.17
VPS13C-209ENST00000560637 RAPGEF3O95398 923 aa7.73□□□□□ -1.17
VPS13C-209ENST00000560637 TONSLQ96HA7 1378 aa7.73□□□□□ -1.17
VPS13C-209ENST00000560637 KIF21BO75037 1637 aa7.73□□□□□ -1.17
VPS13C-209ENST00000560637 SPAG9O60271 1321 aaKnown RBP7.72□□□□□ -1.17
VPS13C-209ENST00000560637 PPP1R15AO75807 674 aaPredicted RBP7.71□□□□□ -1.17
VPS13C-209ENST00000560637 KIAA0586Q9BVV6 1533 aa7.7□□□□□ -1.18
VPS13C-209ENST00000560637 PHLDB1Q86UU1 1377 aa7.7□□□□□ -1.18
VPS13C-209ENST00000560637 CEP170Q5SW79 1584 aa7.69□□□□□ -1.18
VPS13C-209ENST00000560637 PKD2Q13563 968 aa7.69□□□□□ -1.18
VPS13C-209ENST00000560637 CDK13Q14004 1512 aaKnown RBP7.69□□□□□ -1.18
VPS13C-209ENST00000560637 CCDC18Q5T9S5 1454 aa7.68□□□□□ -1.18
VPS13C-209ENST00000560637 SAFB2Q14151 953 aaKnown RBP eCLIP7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms