RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 CARMIL1Q5VZK9 1371 aa16.27■□□□□ 0.19
CUX1-218ENST00000560541 SUPT16HQ9Y5B9 1047 aaKnown RBP16.26■□□□□ 0.19
CUX1-218ENST00000560541 TSHZ2Q9NRE2 1034 aa16.25■□□□□ 0.19
CUX1-218ENST00000560541 SIN3AQ96ST3 1273 aa16.24■□□□□ 0.19
CUX1-218ENST00000560541 PHLDB1Q86UU1 1377 aa16.24■□□□□ 0.19
CUX1-218ENST00000560541 TIAM1Q13009 1591 aa16.23■□□□□ 0.19
CUX1-218ENST00000560541 MAPKBP1O60336 1514 aa16.23■□□□□ 0.19
CUX1-218ENST00000560541 FGD5Q6ZNL6 1462 aa16.22■□□□□ 0.19
CUX1-218ENST00000560541 CADPSQ9ULU8 1353 aa16.2■□□□□ 0.18
CUX1-218ENST00000560541 LRRC9Q6ZRR7 1453 aa16.2■□□□□ 0.18
CUX1-218ENST00000560541 SETD5Q9C0A6 1442 aa16.19■□□□□ 0.18
CUX1-218ENST00000560541 HIRIP3Q9BW71 556 aaPredicted RBP16.18■□□□□ 0.18
CUX1-218ENST00000560541 DDX10Q13206 875 aaKnown RBP16.18■□□□□ 0.18
CUX1-218ENST00000560541 FHOD3Q2V2M9 1422 aa16.14■□□□□ 0.17
CUX1-218ENST00000560541 WDR97A6NE52 1622 aa16.13■□□□□ 0.17
CUX1-218ENST00000560541 PRDM2Q13029 1718 aa16.13■□□□□ 0.17
CUX1-218ENST00000560541 PCF11O94913 1555 aaKnown RBP16.12■□□□□ 0.17
CUX1-218ENST00000560541 FHAD1B1AJZ9 1412 aa16.11■□□□□ 0.17
CUX1-218ENST00000560541 MAP3K1Q13233 1512 aa16.11■□□□□ 0.17
CUX1-218ENST00000560541 RAD54L2Q9Y4B4 1467 aa16.1■□□□□ 0.17
CUX1-218ENST00000560541 BCANQ96GW7 911 aa16.1■□□□□ 0.17
CUX1-218ENST00000560541 FANCD2Q9BXW9 1451 aa16.06■□□□□ 0.16
CUX1-218ENST00000560541 CCDC136Q96JN2 1154 aa16.06■□□□□ 0.16
CUX1-218ENST00000560541 CFAP43Q8NDM7 1665 aa16.04■□□□□ 0.16
CUX1-218ENST00000560541 PPP1R15AO75807 674 aaPredicted RBP16.01■□□□□ 0.15
CUX1-218ENST00000560541 FKBP8Q14318 412 aa16■□□□□ 0.15
CUX1-218ENST00000560541 TRIM52Q96A61 297 aa16■□□□□ 0.15
CUX1-218ENST00000560541 POLA1P09884 1462 aaPredicted RBP15.99■□□□□ 0.15
CUX1-218ENST00000560541 CC2D2AQ9P2K1 1620 aa15.99■□□□□ 0.15
CUX1-218ENST00000560541 NESP48681 1621 aa15.99■□□□□ 0.15
CUX1-218ENST00000560541 FYCO1Q9BQS8 1478 aa15.99■□□□□ 0.15
CUX1-218ENST00000560541 CASKIN1Q8WXD9 1431 aa15.97■□□□□ 0.15
CUX1-218ENST00000560541 SALL2Q9Y467 1007 aaPredicted RBP15.97■□□□□ 0.15
CUX1-218ENST00000560541 TOPBP1Q92547 1522 aa15.96■□□□□ 0.15
CUX1-218ENST00000560541 MTUS2Q5JR59 1369 aa15.96■□□□□ 0.15
CUX1-218ENST00000560541 ABCA10Q8WWZ4 1543 aa15.95■□□□□ 0.14
CUX1-218ENST00000560541 TONSLQ96HA7 1378 aa15.95■□□□□ 0.14
CUX1-218ENST00000560541 FGD6Q6ZV73 1430 aa15.95■□□□□ 0.14
CUX1-218ENST00000560541 DNMBPQ6XZF7 1577 aa15.95■□□□□ 0.14
CUX1-218ENST00000560541 ANP32CO43423 234 aa15.94■□□□□ 0.14
CUX1-218ENST00000560541 TIMELESSQ9UNS1 1208 aa15.93■□□□□ 0.14
CUX1-218ENST00000560541 PTPRKQ15262 1439 aa15.93■□□□□ 0.14
CUX1-218ENST00000560541 EFCAB5A4FU69 1503 aa15.93■□□□□ 0.14
CUX1-218ENST00000560541 CCDC18Q5T9S5 1454 aa15.92■□□□□ 0.14
CUX1-218ENST00000560541 TDRD9Q8NDG6 1382 aaKnown RBP15.92■□□□□ 0.14
CUX1-218ENST00000560541 FMN1Q68DA7 1419 aa15.9■□□□□ 0.14
CUX1-218ENST00000560541 AQRO60306 1485 aaKnown RBP eCLIP15.89■□□□□ 0.134e-7■■■■□ 26.1
CUX1-218ENST00000560541 SNAPC4Q5SXM2 1469 aa15.88■□□□□ 0.13
CUX1-218ENST00000560541 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.88■□□□□ 0.13
CUX1-218ENST00000560541 CTTNBP2Q8WZ74 1663 aa15.88■□□□□ 0.13
CUX1-218ENST00000560541 CHIC2Q9UKJ5 165 aa15.87■□□□□ 0.13
CUX1-218ENST00000560541 NEFLP07196 543 aa15.87■□□□□ 0.13
CUX1-218ENST00000560541 CUL7Q14999 1698 aa15.86■□□□□ 0.13
CUX1-218ENST00000560541 RRP7BPQ9NSQ0 103 aa15.86■□□□□ 0.13
CUX1-218ENST00000560541 CCER2I3L3R5 266 aa15.85■□□□□ 0.13
CUX1-218ENST00000560541 HFM1A2PYH4 1435 aa15.85■□□□□ 0.13
CUX1-218ENST00000560541 UACAQ9BZF9 1416 aa15.85■□□□□ 0.13
CUX1-218ENST00000560541 NCOA2Q15596 1464 aa15.84■□□□□ 0.13
CUX1-218ENST00000560541 ARID3CA6NKF2 412 aa15.84■□□□□ 0.13
CUX1-218ENST00000560541 PTPN23Q9H3S7 1636 aa15.83■□□□□ 0.12
CUX1-218ENST00000560541 NAIPQ13075 1403 aa15.83■□□□□ 0.12
CUX1-218ENST00000560541 URB2Q14146 1524 aaKnown RBP15.82■□□□□ 0.12
CUX1-218ENST00000560541 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.82■□□□□ 0.12
CUX1-218ENST00000560541 MYOM3Q5VTT5 1437 aa15.81■□□□□ 0.12
CUX1-218ENST00000560541 LRRIQ1Q96JM4 1722 aa15.81■□□□□ 0.12
CUX1-218ENST00000560541 EIF5BO60841 1220 aaKnown RBP15.79■□□□□ 0.12
CUX1-218ENST00000560541 RBM19Q9Y4C8 960 aaKnown RBP15.79■□□□□ 0.12
CUX1-218ENST00000560541 GAPVD1Q14C86 1478 aa15.78■□□□□ 0.12
CUX1-218ENST00000560541 UBE2Q2Q8WVN8 375 aa15.77■□□□□ 0.12
CUX1-218ENST00000560541 GRIN2BQ13224 1484 aa15.77■□□□□ 0.12
CUX1-218ENST00000560541 DEKP35659 375 aaKnown RBP15.77■□□□□ 0.12
CUX1-218ENST00000560541 DNAJC5BQ9UF47 199 aa15.77■□□□□ 0.12
CUX1-218ENST00000560541 HNRNPUQ00839 825 aaKnown RBP eCLIP15.77■□□□□ 0.11
CUX1-218ENST00000560541 MSH5O43196 834 aa15.76■□□□□ 0.11
CUX1-218ENST00000560541 SAMD9Q5K651 1589 aa15.76■□□□□ 0.11
CUX1-218ENST00000560541 SLC24A1O60721 1099 aa15.75■□□□□ 0.11
CUX1-218ENST00000560541 IRX6P78412 446 aaPredicted RBP15.75■□□□□ 0.11
CUX1-218ENST00000560541 FOXD1Q16676 465 aa15.75■□□□□ 0.11
CUX1-218ENST00000560541 MAGI3Q5TCQ9 1506 aa15.74■□□□□ 0.11
CUX1-218ENST00000560541 HSPA5P11021 654 aaKnown RBP15.74■□□□□ 0.11
CUX1-218ENST00000560541 SUPT6HQ7KZ85 1726 aaKnown RBP15.73■□□□□ 0.11
CUX1-218ENST00000560541 PLEKHG5O94827 1062 aa15.73■□□□□ 0.11
CUX1-218ENST00000560541 WASHC2AQ641Q2 1341 aa15.73■□□□□ 0.11
CUX1-218ENST00000560541 ABCA5Q8WWZ7 1642 aa15.72■□□□□ 0.11
CUX1-218ENST00000560541 EHBP1L1Q8N3D4 1523 aa15.72■□□□□ 0.11
CUX1-218ENST00000560541 KDM5BQ9UGL1 1544 aa15.72■□□□□ 0.11
CUX1-218ENST00000560541 UGGT2Q9NYU1 1516 aa15.7■□□□□ 0.1
CUX1-218ENST00000560541 RTN4Q9NQC3 1192 aaKnown RBP15.69■□□□□ 0.1
CUX1-218ENST00000560541 DENND4BO75064 1496 aaPredicted RBP15.68■□□□□ 0.1
CUX1-218ENST00000560541 KDM6BO15054 1643 aa15.68■□□□□ 0.1
CUX1-218ENST00000560541 CCDC184Q52MB2 194 aa15.67■□□□□ 0.1
CUX1-218ENST00000560541 MPHOSPH9Q99550 1183 aa15.67■□□□□ 0.1
CUX1-218ENST00000560541 LAMC3Q9Y6N6 1575 aa15.67■□□□□ 0.1
CUX1-218ENST00000560541 L3MBTL2Q969R5 705 aa15.67■□□□□ 0.1
CUX1-218ENST00000560541 EIF4G2P78344 907 aaKnown RBP eCLIP15.66■□□□□ 0.12e-6■■■■□ 21.5
CUX1-218ENST00000560541 CDK13Q14004 1512 aaKnown RBP15.66■□□□□ 0.1
CUX1-218ENST00000560541 THOC2Q8NI27 1593 aaKnown RBP15.65■□□□□ 0.1
CUX1-218ENST00000560541 C11orf95C9JLR9 678 aaPredicted RBP15.64■□□□□ 0.09
CUX1-218ENST00000560541 PDS5BQ9NTI5 1447 aa15.64■□□□□ 0.09
CUX1-218ENST00000560541 ARHGEF11O15085 1522 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms