RNA–Protein interactions for RNA: ENST00000558790.5

SPG11-212, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 858 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-212ENST00000558790 ZNF608Q9ULD9 1512 aaPredicted RBP18.31■□□□□ 0.52
SPG11-212ENST00000558790 CHD1O14646 1710 aa18.26■□□□□ 0.51
SPG11-212ENST00000558790 CCDC88BA6NC98 1476 aa18.24■□□□□ 0.51
SPG11-212ENST00000558790 EIF4G3O43432 1585 aaKnown RBP18.21■□□□□ 0.51
SPG11-212ENST00000558790 IFT140Q96RY7 1462 aa18.2■□□□□ 0.5
SPG11-212ENST00000558790 TOPBP1Q92547 1522 aa18.2■□□□□ 0.5
SPG11-212ENST00000558790 DSG3P32926 999 aa18.18■□□□□ 0.5
SPG11-212ENST00000558790 DNMBPQ6XZF7 1577 aa18.15■□□□□ 0.5
SPG11-212ENST00000558790 TARBP1Q13395 1621 aaKnown RBP18.11■□□□□ 0.49
SPG11-212ENST00000558790 MKRN4PQ13434 485 aaPredicted RBP18.1■□□□□ 0.49
SPG11-212ENST00000558790 ABCC8Q09428 1581 aa18.09■□□□□ 0.49
SPG11-212ENST00000558790 FKBP8Q14318 412 aa18.09■□□□□ 0.49
SPG11-212ENST00000558790 ILDR1Q86SU0 546 aaPredicted RBP18.05■□□□□ 0.48
SPG11-212ENST00000558790 FBLN2P98095 1184 aa18.01■□□□□ 0.47
SPG11-212ENST00000558790 AQRO60306 1485 aaKnown RBP eCLIP18■□□□□ 0.474e-6■■■■■ 31
SPG11-212ENST00000558790 POLA1P09884 1462 aaPredicted RBP18■□□□□ 0.47
SPG11-212ENST00000558790 CLASP1Q7Z460 1538 aa17.94■□□□□ 0.46
SPG11-212ENST00000558790 RAD54L2Q9Y4B4 1467 aa17.91■□□□□ 0.46
SPG11-212ENST00000558790 ZBTB12Q9Y330 459 aaPredicted RBP17.91■□□□□ 0.46
SPG11-212ENST00000558790 WDR97A6NE52 1622 aa17.9■□□□□ 0.46
SPG11-212ENST00000558790 FGD5Q6ZNL6 1462 aa17.87■□□□□ 0.45
SPG11-212ENST00000558790 SNAPC4Q5SXM2 1469 aa17.86■□□□□ 0.45
SPG11-212ENST00000558790 CUX1P39880 1505 aa17.85■□□□□ 0.45
SPG11-212ENST00000558790 PBRM1Q86U86 1689 aa17.84■□□□□ 0.45
SPG11-212ENST00000558790 SOGA1O94964 1423 aa17.83■□□□□ 0.45
SPG11-212ENST00000558790 TDRD9Q8NDG6 1382 aaKnown RBP17.82■□□□□ 0.44
SPG11-212ENST00000558790 SYNJ1O43426 1573 aa17.8■□□□□ 0.44
SPG11-212ENST00000558790 MAGI1Q96QZ7 1491 aaPredicted RBP17.79■□□□□ 0.44
SPG11-212ENST00000558790 KIF13AQ9H1H9 1805 aa17.78■□□□□ 0.44
SPG11-212ENST00000558790 SPDYE4A6NLX3 237 aa17.78■□□□□ 0.44
SPG11-212ENST00000558790 GAPVD1Q14C86 1478 aa17.76■□□□□ 0.43
SPG11-212ENST00000558790 GRIN2BQ13224 1484 aa17.74■□□□□ 0.43
SPG11-212ENST00000558790 ABCA5Q8WWZ7 1642 aa17.72■□□□□ 0.43
SPG11-212ENST00000558790 SYNJ2O15056 1496 aa17.72■□□□□ 0.43
SPG11-212ENST00000558790 ERCC6L2Q5T890 1561 aa17.7■□□□□ 0.42
SPG11-212ENST00000558790 KDM4FA0A1W2PPD8 638 aa17.68■□□□□ 0.42
SPG11-212ENST00000558790 CHMP7Q8WUX9 453 aaPredicted RBP17.65■□□□□ 0.42
SPG11-212ENST00000558790 ABCA10Q8WWZ4 1543 aa17.64■□□□□ 0.41
SPG11-212ENST00000558790 ADAMTS12P58397 1594 aa17.6■□□□□ 0.41
SPG11-212ENST00000558790 BIVM-ERCC5R4GMW8 1640 aa17.59■□□□□ 0.41
SPG11-212ENST00000558790 CEP170Q5SW79 1584 aa17.55■□□□□ 0.4
SPG11-212ENST00000558790 GRIN2AQ12879 1464 aa17.55■□□□□ 0.4
SPG11-212ENST00000558790 TOP2BQ02880 1626 aa17.54■□□□□ 0.4
SPG11-212ENST00000558790 ZNF692Q9BU19 519 aaPredicted RBP17.52■□□□□ 0.4
SPG11-212ENST00000558790 SHROOM2Q13796 1616 aa17.51■□□□□ 0.39
SPG11-212ENST00000558790 SPDYE2BA6NHP3 402 aa17.49■□□□□ 0.39
SPG11-212ENST00000558790 SPDYE6P0CI01 402 aa17.49■□□□□ 0.39
SPG11-212ENST00000558790 SPDYE2Q495Y8 402 aa17.49■□□□□ 0.39
SPG11-212ENST00000558790 WRNQ14191 1432 aaPredicted RBP eCLIP17.48■□□□□ 0.39
SPG11-212ENST00000558790 NUP160Q12769 1436 aa17.47■□□□□ 0.39
SPG11-212ENST00000558790 PROM2Q8N271 834 aa17.47■□□□□ 0.39
SPG11-212ENST00000558790 SUPT5HO00267 1087 aaKnown RBP17.44■□□□□ 0.38
SPG11-212ENST00000558790 KDM6BO15054 1643 aa17.43■□□□□ 0.38
SPG11-212ENST00000558790 ERICH3Q5RHP9 1530 aa17.43■□□□□ 0.38
SPG11-212ENST00000558790 TSPOAP1O95153 1857 aa17.43■□□□□ 0.38
SPG11-212ENST00000558790 FHAD1B1AJZ9 1412 aa17.41■□□□□ 0.38
SPG11-212ENST00000558790 SSUH2Q9Y2M2 353 aa17.41■□□□□ 0.38
SPG11-212ENST00000558790 HECW2Q9P2P5 1572 aa17.4■□□□□ 0.38
SPG11-212ENST00000558790 DIP2BQ9P265 1576 aa17.38■□□□□ 0.37
SPG11-212ENST00000558790 FAM69CQ0P6D2 419 aa17.38■□□□□ 0.37
SPG11-212ENST00000558790 RUSC2Q8N2Y8 1516 aa17.37■□□□□ 0.37
SPG11-212ENST00000558790 ABCC10Q5T3U5 1492 aa17.37■□□□□ 0.37
SPG11-212ENST00000558790 ADGRL1O94910 1474 aa17.31■□□□□ 0.36
SPG11-212ENST00000558790 PRG4Q92954 1404 aaPredicted RBP17.28■□□□□ 0.36
SPG11-212ENST00000558790 MAPKBP1O60336 1514 aa17.26■□□□□ 0.35
SPG11-212ENST00000558790 RBM42Q9BTD8 480 aaKnown RBP17.25■□□□□ 0.35
SPG11-212ENST00000558790 FBXO3Q9UK99 471 aa17.25■□□□□ 0.35
SPG11-212ENST00000558790 ADCY10Q96PN6 1610 aa17.24■□□□□ 0.35
SPG11-212ENST00000558790 CUL7Q14999 1698 aa17.22■□□□□ 0.35
SPG11-212ENST00000558790 FBXO41Q8TF61 875 aa17.19■□□□□ 0.34
SPG11-212ENST00000558790 PPRC1Q5VV67 1664 aaKnown RBP17.18■□□□□ 0.34
SPG11-212ENST00000558790 JPH4Q96JJ6 628 aa17.17■□□□□ 0.34
SPG11-212ENST00000558790 KIAA0586Q9BVV6 1533 aa17.12■□□□□ 0.33
SPG11-212ENST00000558790 AKT1S1Q96B36 256 aa17.11■□□□□ 0.33
SPG11-212ENST00000558790 NPM1P06748 294 aaKnown RBP eCLIP17.09■□□□□ 0.33
SPG11-212ENST00000558790 VASPP50552 380 aaPredicted RBP17.09■□□□□ 0.33
SPG11-212ENST00000558790 KIF27Q86VH2 1401 aa17.09■□□□□ 0.33
SPG11-212ENST00000558790 COL17A1Q9UMD9 1497 aaPredicted RBP17.07■□□□□ 0.32
SPG11-212ENST00000558790 IGF1RP08069 1367 aa17.07■□□□□ 0.32
SPG11-212ENST00000558790 LMTK3Q96Q04 1460 aa17.06■□□□□ 0.32
SPG11-212ENST00000558790 IQGAP2Q13576 1575 aa17.02■□□□□ 0.32
SPG11-212ENST00000558790 ILDR2Q71H61 639 aa17■□□□□ 0.31
SPG11-212ENST00000558790 REM2Q8IYK8 340 aaPredicted RBP17■□□□□ 0.31
SPG11-212ENST00000558790 STAG3Q9UJ98 1225 aa16.97■□□□□ 0.31
SPG11-212ENST00000558790 ABCC2Q92887 1545 aa16.96■□□□□ 0.31
SPG11-212ENST00000558790 CARMIL1Q5VZK9 1371 aa16.96■□□□□ 0.31
SPG11-212ENST00000558790 PTPRGP23470 1445 aa16.95■□□□□ 0.3
SPG11-212ENST00000558790 SPDYE1Q8NFV5 336 aaPredicted RBP16.93■□□□□ 0.3
SPG11-212ENST00000558790 RTN4Q9NQC3 1192 aaKnown RBP16.93■□□□□ 0.3
SPG11-212ENST00000558790 CLEC11AQ9Y240 323 aa16.93■□□□□ 0.3
SPG11-212ENST00000558790 CARMIL2Q6F5E8 1435 aa16.93■□□□□ 0.3
SPG11-212ENST00000558790 GLI2P10070 1586 aa16.93■□□□□ 0.3
SPG11-212ENST00000558790 TNIKQ9UKE5 1360 aa16.92■□□□□ 0.3
SPG11-212ENST00000558790 DISP1Q96F81 1524 aa16.91■□□□□ 0.3
SPG11-212ENST00000558790 ASXL2Q76L83 1435 aa16.9■□□□□ 0.3
SPG11-212ENST00000558790 ZCCHC11Q5TAX3 1644 aaKnown RBP16.9■□□□□ 0.3
SPG11-212ENST00000558790 IFNLR1Q8IU57 520 aaPredicted RBP16.9■□□□□ 0.3
SPG11-212ENST00000558790 UHRF1BP1LA0JNW5 1464 aa16.9■□□□□ 0.3
SPG11-212ENST00000558790 CTTNBP2Q8WZ74 1663 aa16.9■□□□□ 0.3
SPG11-212ENST00000558790 TTBK1Q5TCY1 1321 aaPredicted RBP16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms