RNA–Protein interactions for RNA: ENST00000558787.1

MARK3-215, Transcript of microtubule affinity regulating kinase 3, human

TSL 2

Gene MARK3, Length 758 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MARK3-215	ENST00000558787	PDS5B	Q9NTI5	1447 aa		13.14	□□□□□ -0.31
MARK3-215	ENST00000558787	SPDYE1	Q8NFV5	336 aa	Predicted RBP	13.13	□□□□□ -0.31
MARK3-215	ENST00000558787	FXR2	P51116	673 aa	Known RBP eCLIP	13.12	□□□□□ -0.31
MARK3-215	ENST00000558787	CLEC11A	Q9Y240	323 aa		13.11	□□□□□ -0.31
MARK3-215	ENST00000558787	MRC2	Q9UBG0	1479 aa		13.04	□□□□□ -0.32
MARK3-215	ENST00000558787	TOP2A	P11388	1531 aa	Known RBP	13.03	□□□□□ -0.32
MARK3-215	ENST00000558787	FANCD2	Q9BXW9	1451 aa		13	□□□□□ -0.33
MARK3-215	ENST00000558787	CFTR	P13569	1480 aa		12.99	□□□□□ -0.33
MARK3-215	ENST00000558787	CEP164	Q9UPV0	1460 aa		12.99	□□□□□ -0.33
MARK3-215	ENST00000558787	WDR62	O43379	1518 aa		12.98	□□□□□ -0.33
MARK3-215	ENST00000558787	HAX1	O00165	279 aa		12.96	□□□□□ -0.33
MARK3-215	ENST00000558787	CCDC88B	A6NC98	1476 aa		12.94	□□□□□ -0.34
MARK3-215	ENST00000558787	PRKAR2A	P13861	404 aa	Known RBP	12.94	□□□□□ -0.34
MARK3-215	ENST00000558787	PRR29	P0C7W0	189 aa		12.92	□□□□□ -0.34
MARK3-215	ENST00000558787	URB2	Q14146	1524 aa	Known RBP	12.9	□□□□□ -0.34
MARK3-215	ENST00000558787	SP7	Q8TDD2	431 aa	Predicted RBP	12.88	□□□□□ -0.35
MARK3-215	ENST00000558787	SPDYE4	A6NLX3	237 aa		12.86	□□□□□ -0.35
MARK3-215	ENST00000558787	TRIM41	Q8WV44	630 aa		12.81	□□□□□ -0.36
MARK3-215	ENST00000558787	CHADL	Q6NUI6	762 aa		12.8	□□□□□ -0.36
MARK3-215	ENST00000558787	PRDM2	Q13029	1718 aa		12.79	□□□□□ -0.36
MARK3-215	ENST00000558787	STAG3	Q9UJ98	1225 aa		12.77	□□□□□ -0.37
MARK3-215	ENST00000558787	ZNF608	Q9ULD9	1512 aa	Predicted RBP	12.77	□□□□□ -0.37
MARK3-215	ENST00000558787	TOPBP1	Q92547	1522 aa		12.76	□□□□□ -0.37
MARK3-215	ENST00000558787	IFT140	Q96RY7	1462 aa		12.72	□□□□□ -0.37
MARK3-215	ENST00000558787	EVX2	Q03828	476 aa		12.71	□□□□□ -0.37
MARK3-215	ENST00000558787	C19orf67	A6NJJ6	358 aa		12.7	□□□□□ -0.38
MARK3-215	ENST00000558787	SUPT5H	O00267	1087 aa	Known RBP	12.7	□□□□□ -0.38
MARK3-215	ENST00000558787	DNMBP	Q6XZF7	1577 aa		12.69	□□□□□ -0.38
MARK3-215	ENST00000558787	ABCC8	Q09428	1581 aa		12.68	□□□□□ -0.38
MARK3-215	ENST00000558787	AQR	O60306	1485 aa	Known RBP eCLIP	12.66	□□□□□ -0.38
MARK3-215	ENST00000558787	FARP1	Q9Y4F1	1045 aa	Predicted RBP	12.64	□□□□□ -0.39
MARK3-215	ENST00000558787	POLA1	P09884	1462 aa	Predicted RBP	12.64	□□□□□ -0.39
MARK3-215	ENST00000558787	RAD54L2	Q9Y4B4	1467 aa		12.64	□□□□□ -0.39
MARK3-215	ENST00000558787	EIF4G3	O43432	1585 aa	Known RBP	12.63	□□□□□ -0.39
MARK3-215	ENST00000558787	TARBP1	Q13395	1621 aa	Known RBP	12.62	□□□□□ -0.39
MARK3-215	ENST00000558787	TDRD9	Q8NDG6	1382 aa	Known RBP	12.61	□□□□□ -0.39
MARK3-215	ENST00000558787	SOGA1	O94964	1423 aa		12.61	□□□□□ -0.39
MARK3-215	ENST00000558787	CUX1	P39880	1505 aa		12.57	□□□□□ -0.4
MARK3-215	ENST00000558787	FGD5	Q6ZNL6	1462 aa		12.57	□□□□□ -0.4
MARK3-215	ENST00000558787	CREBZF	Q9NS37	354 aa		12.56	□□□□□ -0.4
MARK3-215	ENST00000558787	RIMBP3C	A6NJZ7	1639 aa		12.55	□□□□□ -0.4
MARK3-215	ENST00000558787	RIMBP3B	A6NNM3	1639 aa		12.55	□□□□□ -0.4
MARK3-215	ENST00000558787	RIMBP3	Q9UFD9	1639 aa		12.55	□□□□□ -0.4
MARK3-215	ENST00000558787	CD44	P16070	742 aa	Known RBP	12.54	□□□□□ -0.4
MARK3-215	ENST00000558787	CHD1	O14646	1710 aa		12.53	□□□□□ -0.4
MARK3-215	ENST00000558787	ARHGEF11	O15085	1522 aa		12.52	□□□□□ -0.4
MARK3-215	ENST00000558787	CYB5RL	Q6IPT4	315 aa		12.52	□□□□□ -0.41
MARK3-215	ENST00000558787	PROM2	Q8N271	834 aa		12.51	□□□□□ -0.41
MARK3-215	ENST00000558787	SNAPC4	Q5SXM2	1469 aa		12.5	□□□□□ -0.41
MARK3-215	ENST00000558787	GABBR2	O75899	941 aa		12.48	□□□□□ -0.41
MARK3-215	ENST00000558787	CHMP7	Q8WUX9	453 aa	Predicted RBP	12.48	□□□□□ -0.41
MARK3-215	ENST00000558787	GRIN2B	Q13224	1484 aa		12.46	□□□□□ -0.42
MARK3-215	ENST00000558787	GAPVD1	Q14C86	1478 aa		12.43	□□□□□ -0.42
MARK3-215	ENST00000558787	NPM1	P06748	294 aa	Known RBP eCLIP	12.43	□□□□□ -0.42
MARK3-215	ENST00000558787	ARAP1	Q96P48	1450 aa		12.42	□□□□□ -0.42
MARK3-215	ENST00000558787	MAGI1	Q96QZ7	1491 aa	Predicted RBP	12.42	□□□□□ -0.42
MARK3-215	ENST00000558787	WDR97	A6NE52	1622 aa		12.41	□□□□□ -0.42
MARK3-215	ENST00000558787	SYNJ2	O15056	1496 aa		12.4	□□□□□ -0.42
MARK3-215	ENST00000558787	CLCN6	P51797	869 aa		12.4	□□□□□ -0.42
MARK3-215	ENST00000558787	ABCA10	Q8WWZ4	1543 aa		12.4	□□□□□ -0.42
MARK3-215	ENST00000558787	ZRANB1	Q9UGI0	708 aa		12.39	□□□□□ -0.43
MARK3-215	ENST00000558787	WRN	Q14191	1432 aa	Predicted RBP eCLIP	12.38	□□□□□ -0.43
MARK3-215	ENST00000558787	CLASP1	Q7Z460	1538 aa		12.38	□□□□□ -0.43
MARK3-215	ENST00000558787	PBRM1	Q86U86	1689 aa		12.38	□□□□□ -0.43
MARK3-215	ENST00000558787	PAK3	O75914	559 aa	Predicted RBP	12.37	□□□□□ -0.43
MARK3-215	ENST00000558787	SYNJ1	O43426	1573 aa		12.37	□□□□□ -0.43
MARK3-215	ENST00000558787	ABCA5	Q8WWZ7	1642 aa		12.37	□□□□□ -0.43
MARK3-215	ENST00000558787	TOP2B	Q02880	1626 aa		12.34	□□□□□ -0.43
MARK3-215	ENST00000558787	FKBP8	Q14318	412 aa		12.34	□□□□□ -0.43
MARK3-215	ENST00000558787	MNX1	P50219	401 aa	Predicted RBP	12.33	□□□□□ -0.44
MARK3-215	ENST00000558787	ZNF579	Q8NAF0	562 aa	Known RBP	12.33	□□□□□ -0.44
MARK3-215	ENST00000558787	BIVM-ERCC5	R4GMW8	1640 aa		12.33	□□□□□ -0.44
MARK3-215	ENST00000558787	PLEKHG5	O94827	1062 aa		12.32	□□□□□ -0.44
MARK3-215	ENST00000558787	MIER1	Q8N108	512 aa		12.3	□□□□□ -0.44
MARK3-215	ENST00000558787	GRIN2A	Q12879	1464 aa		12.29	□□□□□ -0.44
MARK3-215	ENST00000558787	ADAMTS12	P58397	1594 aa		12.27	□□□□□ -0.44
MARK3-215	ENST00000558787	FHAD1	B1AJZ9	1412 aa		12.27	□□□□□ -0.45
MARK3-215	ENST00000558787	ERCC6L2	Q5T890	1561 aa		12.26	□□□□□ -0.45
MARK3-215	ENST00000558787	CEP170	Q5SW79	1584 aa		12.26	□□□□□ -0.45
MARK3-215	ENST00000558787	NUP160	Q12769	1436 aa		12.24	□□□□□ -0.45
MARK3-215	ENST00000558787	DCBLD2	Q96PD2	775 aa		12.23	□□□□□ -0.45
MARK3-215	ENST00000558787	ERICH3	Q5RHP9	1530 aa		12.22	□□□□□ -0.45
MARK3-215	ENST00000558787	PLCD3	Q8N3E9	789 aa		12.22	□□□□□ -0.45
MARK3-215	ENST00000558787	PHF12	Q96QT6	1004 aa		12.19	□□□□□ -0.46
MARK3-215	ENST00000558787	JPH4	Q96JJ6	628 aa		12.18	□□□□□ -0.46
MARK3-215	ENST00000558787	POTEI	P0CG38	1075 aa		12.17	□□□□□ -0.46
MARK3-215	ENST00000558787	PRG4	Q92954	1404 aa	Predicted RBP	12.17	□□□□□ -0.46
MARK3-215	ENST00000558787	IGF1R	P08069	1367 aa		12.17	□□□□□ -0.46
MARK3-215	ENST00000558787	GALR2	O43603	387 aa	Predicted RBP	12.16	□□□□□ -0.46
MARK3-215	ENST00000558787	TSPYL2	Q9H2G4	693 aa	Predicted RBP	12.16	□□□□□ -0.46
MARK3-215	ENST00000558787	SHROOM2	Q13796	1616 aa		12.15	□□□□□ -0.46
MARK3-215	ENST00000558787	KIF27	Q86VH2	1401 aa		12.13	□□□□□ -0.47
MARK3-215	ENST00000558787	ZBTB47	Q9UFB7	747 aa	Predicted RBP	12.13	□□□□□ -0.47
MARK3-215	ENST00000558787	LHX8	Q68G74	356 aa		12.11	□□□□□ -0.47
MARK3-215	ENST00000558787	FBXO3	Q9UK99	471 aa		12.11	□□□□□ -0.47
MARK3-215	ENST00000558787	RUSC2	Q8N2Y8	1516 aa		12.1	□□□□□ -0.47
MARK3-215	ENST00000558787	CARMIL1	Q5VZK9	1371 aa		12.07	□□□□□ -0.48
MARK3-215	ENST00000558787	TTBK1	Q5TCY1	1321 aa	Predicted RBP	12.07	□□□□□ -0.48
MARK3-215	ENST00000558787	CCDC61	Q9Y6R9	512 aa		12.06	□□□□□ -0.48
MARK3-215	ENST00000558787	KIAA0586	Q9BVV6	1533 aa		12.06	□□□□□ -0.48

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