RNA–Protein interactions for RNA: ENST00000558080.1

SPG11-205, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 1 (best)

Gene SPG11, Length 759 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-205ENST00000558080 HAX1O00165 279 aa14.03□□□□□ -0.16
SPG11-205ENST00000558080 SPDYE1Q8NFV5 336 aaPredicted RBP14.03□□□□□ -0.16
SPG11-205ENST00000558080 TOP2AP11388 1531 aaKnown RBP14.02□□□□□ -0.16
SPG11-205ENST00000558080 CSRNP3Q8WYN3 585 aa13.98□□□□□ -0.17
SPG11-205ENST00000558080 DNAJC5Q9H3Z4 198 aa13.98□□□□□ -0.17
SPG11-205ENST00000558080 CLEC11AQ9Y240 323 aa13.96□□□□□ -0.17
SPG11-205ENST00000558080 MRC2Q9UBG0 1479 aa13.93□□□□□ -0.18
SPG11-205ENST00000558080 PRDM2Q13029 1718 aa13.93□□□□□ -0.18
SPG11-205ENST00000558080 PRKAR2AP13861 404 aaKnown RBP13.91□□□□□ -0.18
SPG11-205ENST00000558080 CFTRP13569 1480 aa13.91□□□□□ -0.18
SPG11-205ENST00000558080 FANCD2Q9BXW9 1451 aa13.9□□□□□ -0.18
SPG11-205ENST00000558080 CEP164Q9UPV0 1460 aa13.9□□□□□ -0.18
SPG11-205ENST00000558080 WDR62O43379 1518 aa13.88□□□□□ -0.19
SPG11-205ENST00000558080 CCDC88BA6NC98 1476 aa13.87□□□□□ -0.19
SPG11-205ENST00000558080 EVX2Q03828 476 aa13.86□□□□□ -0.19
SPG11-205ENST00000558080 URB2Q14146 1524 aaKnown RBP13.79□□□□□ -0.2
SPG11-205ENST00000558080 C19orf67A6NJJ6 358 aa13.76□□□□□ -0.21
SPG11-205ENST00000558080 PRR29P0C7W0 189 aa13.74□□□□□ -0.21
SPG11-205ENST00000558080 CHADLQ6NUI6 762 aa13.71□□□□□ -0.21
SPG11-205ENST00000558080 EHMT2Q96KQ7 1210 aa13.7□□□□□ -0.22
SPG11-205ENST00000558080 TOPBP1Q92547 1522 aa13.66□□□□□ -0.22
SPG11-205ENST00000558080 SUPT5HO00267 1087 aaKnown RBP13.64□□□□□ -0.23
SPG11-205ENST00000558080 DNMBPQ6XZF7 1577 aa13.63□□□□□ -0.23
SPG11-205ENST00000558080 ABCC8Q09428 1581 aa13.62□□□□□ -0.23
SPG11-205ENST00000558080 IFT140Q96RY7 1462 aa13.61□□□□□ -0.23
SPG11-205ENST00000558080 ZNF608Q9ULD9 1512 aaPredicted RBP13.6□□□□□ -0.23
SPG11-205ENST00000558080 TARBP1Q13395 1621 aaKnown RBP13.56□□□□□ -0.24
SPG11-205ENST00000558080 EIF4G3O43432 1585 aaKnown RBP13.55□□□□□ -0.24
SPG11-205ENST00000558080 GABBR2O75899 941 aa13.55□□□□□ -0.24
SPG11-205ENST00000558080 FARP1Q9Y4F1 1045 aaPredicted RBP13.54□□□□□ -0.24
SPG11-205ENST00000558080 POLA1P09884 1462 aaPredicted RBP13.52□□□□□ -0.25
SPG11-205ENST00000558080 CHD1O14646 1710 aa13.5□□□□□ -0.25
SPG11-205ENST00000558080 AQRO60306 1485 aaKnown RBP eCLIP13.49□□□□□ -0.253e-7■■■■■ 30.5
SPG11-205ENST00000558080 RAD54L2Q9Y4B4 1467 aa13.49□□□□□ -0.25
SPG11-205ENST00000558080 CUX1P39880 1505 aa13.49□□□□□ -0.25
SPG11-205ENST00000558080 TRIM41Q8WV44 630 aa13.48□□□□□ -0.25
SPG11-205ENST00000558080 SOGA1O94964 1423 aa13.47□□□□□ -0.25
SPG11-205ENST00000558080 CD44P16070 742 aaKnown RBP13.47□□□□□ -0.25
SPG11-205ENST00000558080 FGD5Q6ZNL6 1462 aa13.47□□□□□ -0.25
SPG11-205ENST00000558080 SPDYE4A6NLX3 237 aa13.46□□□□□ -0.25
SPG11-205ENST00000558080 STAG3Q9UJ98 1225 aa13.46□□□□□ -0.25
SPG11-205ENST00000558080 TDRD9Q8NDG6 1382 aaKnown RBP13.43□□□□□ -0.26
SPG11-205ENST00000558080 WDR97A6NE52 1622 aa13.41□□□□□ -0.26
SPG11-205ENST00000558080 RIMBP3CA6NJZ7 1639 aa13.41□□□□□ -0.26
SPG11-205ENST00000558080 RIMBP3BA6NNM3 1639 aa13.41□□□□□ -0.26
SPG11-205ENST00000558080 RIMBP3Q9UFD9 1639 aa13.41□□□□□ -0.26
SPG11-205ENST00000558080 CREBZFQ9NS37 354 aa13.4□□□□□ -0.26
SPG11-205ENST00000558080 PBRM1Q86U86 1689 aa13.38□□□□□ -0.27
SPG11-205ENST00000558080 CLCN6P51797 869 aa13.37□□□□□ -0.27
SPG11-205ENST00000558080 SNAPC4Q5SXM2 1469 aa13.36□□□□□ -0.27
SPG11-205ENST00000558080 BIVM-ERCC5R4GMW8 1640 aa13.35□□□□□ -0.27
SPG11-205ENST00000558080 ARHGEF11O15085 1522 aa13.34□□□□□ -0.27
SPG11-205ENST00000558080 GRIN2BQ13224 1484 aa13.33□□□□□ -0.28
SPG11-205ENST00000558080 SYNJ1O43426 1573 aa13.32□□□□□ -0.28
SPG11-205ENST00000558080 TOP2BQ02880 1626 aa13.31□□□□□ -0.28
SPG11-205ENST00000558080 ABCA5Q8WWZ7 1642 aa13.31□□□□□ -0.28
SPG11-205ENST00000558080 GAPVD1Q14C86 1478 aa13.3□□□□□ -0.28
SPG11-205ENST00000558080 MAGI1Q96QZ7 1491 aaPredicted RBP13.3□□□□□ -0.28
SPG11-205ENST00000558080 ABCA10Q8WWZ4 1543 aa13.3□□□□□ -0.28
SPG11-205ENST00000558080 CHMP7Q8WUX9 453 aaPredicted RBP13.3□□□□□ -0.28
SPG11-205ENST00000558080 WRNQ14191 1432 aaPredicted RBP eCLIP13.3□□□□□ -0.28
SPG11-205ENST00000558080 ZNF579Q8NAF0 562 aaKnown RBP13.29□□□□□ -0.28
SPG11-205ENST00000558080 POTEIP0CG38 1075 aa13.27□□□□□ -0.29
SPG11-205ENST00000558080 LHX8Q68G74 356 aa13.27□□□□□ -0.29
SPG11-205ENST00000558080 SYNJ2O15056 1496 aa13.26□□□□□ -0.29
SPG11-205ENST00000558080 ZRANB1Q9UGI0 708 aa13.25□□□□□ -0.29
SPG11-205ENST00000558080 CLASP1Q7Z460 1538 aa13.24□□□□□ -0.29
SPG11-205ENST00000558080 CYB5RLQ6IPT4 315 aa13.24□□□□□ -0.29
SPG11-205ENST00000558080 ARAP1Q96P48 1450 aa13.21□□□□□ -0.3
SPG11-205ENST00000558080 ADAMTS12P58397 1594 aa13.19□□□□□ -0.3
SPG11-205ENST00000558080 PROM2Q8N271 834 aa13.18□□□□□ -0.3
SPG11-205ENST00000558080 MNX1P50219 401 aaPredicted RBP13.17□□□□□ -0.3
SPG11-205ENST00000558080 DCBLD2Q96PD2 775 aa13.16□□□□□ -0.3
SPG11-205ENST00000558080 GRIN2AQ12879 1464 aa13.16□□□□□ -0.3
SPG11-205ENST00000558080 ERICH3Q5RHP9 1530 aa13.14□□□□□ -0.31
SPG11-205ENST00000558080 NPM1P06748 294 aaKnown RBP eCLIP13.14□□□□□ -0.31
SPG11-205ENST00000558080 CEP170Q5SW79 1584 aa13.14□□□□□ -0.31
SPG11-205ENST00000558080 PAK3O75914 559 aaPredicted RBP13.13□□□□□ -0.31
SPG11-205ENST00000558080 FHAD1B1AJZ9 1412 aa13.13□□□□□ -0.31
SPG11-205ENST00000558080 GALR2O43603 387 aaPredicted RBP13.1□□□□□ -0.31
SPG11-205ENST00000558080 ERCC6L2Q5T890 1561 aa13.09□□□□□ -0.31
SPG11-205ENST00000558080 NUP160Q12769 1436 aa13.08□□□□□ -0.32
SPG11-205ENST00000558080 SHROOM2Q13796 1616 aa13.06□□□□□ -0.32
SPG11-205ENST00000558080 PHF12Q96QT6 1004 aa13.06□□□□□ -0.32
SPG11-205ENST00000558080 KIF27Q86VH2 1401 aa13.03□□□□□ -0.32
SPG11-205ENST00000558080 CUL7Q14999 1698 aa13.02□□□□□ -0.32
SPG11-205ENST00000558080 IGF1RP08069 1367 aa13.01□□□□□ -0.33
SPG11-205ENST00000558080 RUSC2Q8N2Y8 1516 aa12.99□□□□□ -0.33
SPG11-205ENST00000558080 PRG4Q92954 1404 aaPredicted RBP12.98□□□□□ -0.33
SPG11-205ENST00000558080 JPH4Q96JJ6 628 aa12.98□□□□□ -0.33
SPG11-205ENST00000558080 CARMIL1Q5VZK9 1371 aa12.94□□□□□ -0.34
SPG11-205ENST00000558080 KIAA0586Q9BVV6 1533 aa12.92□□□□□ -0.34
SPG11-205ENST00000558080 MS4A3Q96HJ5 214 aa12.89□□□□□ -0.35
SPG11-205ENST00000558080 KIF13AQ9H1H9 1805 aa12.88□□□□□ -0.35
SPG11-205ENST00000558080 TSPYL2Q9H2G4 693 aaPredicted RBP12.87□□□□□ -0.35
SPG11-205ENST00000558080 CCDC61Q9Y6R9 512 aa12.87□□□□□ -0.35
SPG11-205ENST00000558080 ASTLQ6HA08 431 aaPredicted RBP12.86□□□□□ -0.35
SPG11-205ENST00000558080 PELP1Q8IZL8 1130 aaKnown RBP12.86□□□□□ -0.35
SPG11-205ENST00000558080 PLEKHG5O94827 1062 aa12.85□□□□□ -0.35
SPG11-205ENST00000558080 IQGAP2Q13576 1575 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms