RNA–Protein interactions for RNA: ENST00000558080.1

SPG11-205, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 1 (best)

Gene SPG11, Length 759 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-205ENST00000558080 AEBP2Q6ZN18 517 aaPredicted RBP26.34■■□□□ 1.81
SPG11-205ENST00000558080 CHIC1Q5VXU3 224 aa24.93■■□□□ 1.58
SPG11-205ENST00000558080 SENP3Q9H4L4 574 aaPredicted RBP22.51■■□□□ 1.19
SPG11-205ENST00000558080 PHF23Q9BUL5 403 aaPredicted RBP22.17■■□□□ 1.14
SPG11-205ENST00000558080 FOXD1Q16676 465 aa20.97■□□□□ 0.95
SPG11-205ENST00000558080 PLPPR3Q6T4P5 718 aa19.88■□□□□ 0.77
SPG11-205ENST00000558080 MSH5O43196 834 aa19.69■□□□□ 0.74
SPG11-205ENST00000558080 PIAS4Q8N2W9 510 aaPredicted RBP19.56■□□□□ 0.72
SPG11-205ENST00000558080 PPP6R1Q9UPN7 881 aa19.51■□□□□ 0.71
SPG11-205ENST00000558080 ADRA2BP18089 450 aa19.43■□□□□ 0.7
SPG11-205ENST00000558080 POTEDQ86YR6 584 aa19.35■□□□□ 0.69
SPG11-205ENST00000558080 NISCHQ9Y2I1 1504 aa18.62■□□□□ 0.57
SPG11-205ENST00000558080 MAPK8IP2Q13387 824 aaPredicted RBP17.87■□□□□ 0.45
SPG11-205ENST00000558080 DMRT2Q9Y5R5 561 aa17.84■□□□□ 0.45
SPG11-205ENST00000558080 SCAF1Q9H7N4 1312 aaKnown RBP17.82■□□□□ 0.44
SPG11-205ENST00000558080 PPP4R3CPQ6ZMV5 832 aa17.39■□□□□ 0.37
SPG11-205ENST00000558080 HOXD11P31277 338 aaPredicted RBP17.15■□□□□ 0.34
SPG11-205ENST00000558080 CNKSR2Q8WXI2 1034 aa17.1■□□□□ 0.33
SPG11-205ENST00000558080 DCAF8L1A6NGE4 600 aa17.02■□□□□ 0.32
SPG11-205ENST00000558080 RNF216Q9NWF9 866 aaPredicted RBP16.99■□□□□ 0.31
SPG11-205ENST00000558080 CACNB1Q02641 598 aaPredicted RBP16.9■□□□□ 0.3
SPG11-205ENST00000558080 RNF39Q9H2S5 420 aa16.79■□□□□ 0.28
SPG11-205ENST00000558080 NCBP3Q53F19 620 aaKnown RBP16.7■□□□□ 0.26
SPG11-205ENST00000558080 CCDC180Q9P1Z9 1646 aa16.68■□□□□ 0.26
SPG11-205ENST00000558080 DNAJC5BQ9UF47 199 aa16.63■□□□□ 0.25
SPG11-205ENST00000558080 C1QBPQ07021 282 aaKnown RBP16.55■□□□□ 0.24
SPG11-205ENST00000558080 ABCC9O60706 1549 aa16.54■□□□□ 0.24
SPG11-205ENST00000558080 NPM3O75607 178 aaKnown RBP16.46■□□□□ 0.23
SPG11-205ENST00000558080 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.29■□□□□ 0.2
SPG11-205ENST00000558080 KCNA4P22459 653 aa16.04■□□□□ 0.16
SPG11-205ENST00000558080 U3KPZ7 1027 aaPredicted RBP15.96■□□□□ 0.15
SPG11-205ENST00000558080 RB1CC1Q8TDY2 1594 aa15.79■□□□□ 0.12
SPG11-205ENST00000558080 SLC4A2P04920 1241 aa15.75■□□□□ 0.11
SPG11-205ENST00000558080 SPINK5Q9NQ38 1064 aaPredicted RBP15.74■□□□□ 0.11
SPG11-205ENST00000558080 DCAF8L2P0C7V8 631 aa15.71■□□□□ 0.11
SPG11-205ENST00000558080 CAPN15O75808 1086 aa15.7■□□□□ 0.1
SPG11-205ENST00000558080 NACADO15069 1562 aa15.7■□□□□ 0.1
SPG11-205ENST00000558080 DSG3P32926 999 aa15.67■□□□□ 0.1
SPG11-205ENST00000558080 UNC13AQ9UPW8 1703 aa15.57■□□□□ 0.08
SPG11-205ENST00000558080 APLP2Q06481 763 aa15.53■□□□□ 0.08
SPG11-205ENST00000558080 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.49■□□□□ 0.07
SPG11-205ENST00000558080 HNRNPUL2Q1KMD3 747 aaKnown RBP15.49■□□□□ 0.07
SPG11-205ENST00000558080 MYO15BQ96JP2 1530 aa15.48■□□□□ 0.07
SPG11-205ENST00000558080 ZNF219Q9P2Y4 722 aaPredicted RBP15.44■□□□□ 0.06
SPG11-205ENST00000558080 ZCCHC6Q5VYS8 1495 aaKnown RBP15.44■□□□□ 0.06
SPG11-205ENST00000558080 TRHP20396 242 aaPredicted RBP15.42■□□□□ 0.06
SPG11-205ENST00000558080 PABPN1Q86U42 306 aaKnown RBP eCLIP15.42■□□□□ 0.06
SPG11-205ENST00000558080 SAMD1Q6SPF0 538 aaPredicted RBP15.4■□□□□ 0.06
SPG11-205ENST00000558080 DCAF1Q9Y4B6 1507 aa15.35■□□□□ 0.05
SPG11-205ENST00000558080 BICRAQ9NZM4 1560 aa15.33■□□□□ 0.05
SPG11-205ENST00000558080 ABCB7O75027 752 aa15.32■□□□□ 0.04
SPG11-205ENST00000558080 MYCNP04198 464 aaPredicted RBP15.23■□□□□ 0.03
SPG11-205ENST00000558080 SCRIBQ14160 1630 aa15.23■□□□□ 0.03
SPG11-205ENST00000558080 POTEHQ6S545 545 aa15.15■□□□□ 0.02
SPG11-205ENST00000558080 SLC4A1APQ9BWU0 796 aaKnown RBP15.12■□□□□ 0.01
SPG11-205ENST00000558080 SHROOM4Q9ULL8 1493 aa15.05■□□□□ -0
SPG11-205ENST00000558080 FOXD4L1Q9NU39 408 aa15.02■□□□□ -0
SPG11-205ENST00000558080 POLA2Q14181 598 aa15.01□□□□□ -0.01
SPG11-205ENST00000558080 RBM42Q9BTD8 480 aaKnown RBP14.98□□□□□ -0.01
SPG11-205ENST00000558080 CC2D2AQ9P2K1 1620 aa14.95□□□□□ -0.02
SPG11-205ENST00000558080 EIF4G1Q04637 1599 aaKnown RBP14.93□□□□□ -0.02
SPG11-205ENST00000558080 ATF5Q9Y2D1 282 aaPredicted RBP14.86□□□□□ -0.03
SPG11-205ENST00000558080 CECR2Q9BXF3 1484 aa14.86□□□□□ -0.03
SPG11-205ENST00000558080 ZBTB22O15209 634 aa14.75□□□□□ -0.05
SPG11-205ENST00000558080 ZBTB12Q9Y330 459 aaPredicted RBP14.74□□□□□ -0.05
SPG11-205ENST00000558080 CHRDL2Q6WN34 429 aa14.67□□□□□ -0.06
SPG11-205ENST00000558080 ATXN8OSP0DMR3 200 aa14.6□□□□□ -0.07
SPG11-205ENST00000558080 AKT1S1Q96B36 256 aa14.6□□□□□ -0.07
SPG11-205ENST00000558080 OSCARQ8IYS5 282 aa14.53□□□□□ -0.08
SPG11-205ENST00000558080 SMARCA4P51532 1647 aa14.52□□□□□ -0.08
SPG11-205ENST00000558080 NCAPD3P42695 1498 aa14.46□□□□□ -0.09
SPG11-205ENST00000558080 ATAD2BQ9ULI0 1458 aa14.46□□□□□ -0.09
SPG11-205ENST00000558080 REM2Q8IYK8 340 aaPredicted RBP14.45□□□□□ -0.1
SPG11-205ENST00000558080 BAZ1AQ9NRL2 1556 aaPredicted RBP14.44□□□□□ -0.1
SPG11-205ENST00000558080 SMARCA2P51531 1590 aa14.43□□□□□ -0.1
SPG11-205ENST00000558080 HMGXB3Q12766 1538 aa14.38□□□□□ -0.11
SPG11-205ENST00000558080 MROH2BQ7Z745 1585 aa14.37□□□□□ -0.11
SPG11-205ENST00000558080 BAZ1BQ9UIG0 1483 aaKnown RBP14.34□□□□□ -0.11
SPG11-205ENST00000558080 PEG3Q9GZU2 1588 aa14.34□□□□□ -0.11
SPG11-205ENST00000558080 FBLN2P98095 1184 aa14.3□□□□□ -0.12
SPG11-205ENST00000558080 PITPNM1O00562 1244 aa14.29□□□□□ -0.12
SPG11-205ENST00000558080 PIP4P2Q8N4L2 257 aa14.29□□□□□ -0.12
SPG11-205ENST00000558080 SPDYE2BA6NHP3 402 aa14.27□□□□□ -0.13
SPG11-205ENST00000558080 SPDYE6P0CI01 402 aa14.27□□□□□ -0.13
SPG11-205ENST00000558080 SPDYE2Q495Y8 402 aa14.27□□□□□ -0.13
SPG11-205ENST00000558080 WIZO95785 1651 aa14.26□□□□□ -0.13
SPG11-205ENST00000558080 NESP48681 1621 aa14.26□□□□□ -0.13
SPG11-205ENST00000558080 ERCC6Q03468 1493 aa14.25□□□□□ -0.13
SPG11-205ENST00000558080 FXR2P51116 673 aaKnown RBP eCLIP14.21□□□□□ -0.13
SPG11-205ENST00000558080 MKRN4PQ13434 485 aaPredicted RBP14.19□□□□□ -0.14
SPG11-205ENST00000558080 SP7Q8TDD2 431 aaPredicted RBP14.16□□□□□ -0.14
SPG11-205ENST00000558080 LAMC3Q9Y6N6 1575 aa14.15□□□□□ -0.14
SPG11-205ENST00000558080 KIF21AQ7Z4S6 1674 aa14.14□□□□□ -0.15
SPG11-205ENST00000558080 CUX2O14529 1486 aa14.14□□□□□ -0.15
SPG11-205ENST00000558080 RSF1Q96T23 1441 aaPredicted RBP14.09□□□□□ -0.15
SPG11-205ENST00000558080 SSUH2Q9Y2M2 353 aa14.08□□□□□ -0.16
SPG11-205ENST00000558080 THOC2Q8NI27 1593 aaKnown RBP14.07□□□□□ -0.16
SPG11-205ENST00000558080 ZNF692Q9BU19 519 aaPredicted RBP14.04□□□□□ -0.16
SPG11-205ENST00000558080 CADPSQ9ULU8 1353 aa14.04□□□□□ -0.16
SPG11-205ENST00000558080 PDS5BQ9NTI5 1447 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms