RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 NESP48681 1621 aa18.78■□□□□ 0.6
LDLR-207ENST00000558013 PRDM2Q13029 1718 aa18.78■□□□□ 0.6
LDLR-207ENST00000558013 TIAM1Q13009 1591 aa18.77■□□□□ 0.6
LDLR-207ENST00000558013 FHOD3Q2V2M9 1422 aa18.75■□□□□ 0.59
LDLR-207ENST00000558013 LRRC9Q6ZRR7 1453 aa18.75■□□□□ 0.59
LDLR-207ENST00000558013 SIN3AQ96ST3 1273 aa18.75■□□□□ 0.59
LDLR-207ENST00000558013 DNAJC5BQ9UF47 199 aa18.7■□□□□ 0.58
LDLR-207ENST00000558013 MAPKBP1O60336 1514 aa18.7■□□□□ 0.58
LDLR-207ENST00000558013 KCNH8Q96L42 1107 aa18.69■□□□□ 0.58
LDLR-207ENST00000558013 POLA1P09884 1462 aaPredicted RBP18.69■□□□□ 0.58
LDLR-207ENST00000558013 PCF11O94913 1555 aaKnown RBP18.68■□□□□ 0.58
LDLR-207ENST00000558013 SETD5Q9C0A6 1442 aa18.68■□□□□ 0.58
LDLR-207ENST00000558013 TOPBP1Q92547 1522 aa18.66■□□□□ 0.58
LDLR-207ENST00000558013 FHAD1B1AJZ9 1412 aa18.64■□□□□ 0.58
LDLR-207ENST00000558013 HIRIP3Q9BW71 556 aaPredicted RBP18.64■□□□□ 0.57
LDLR-207ENST00000558013 MAP3K1Q13233 1512 aa18.64■□□□□ 0.57
LDLR-207ENST00000558013 TDRD9Q8NDG6 1382 aaKnown RBP18.63■□□□□ 0.57
LDLR-207ENST00000558013 ABCA10Q8WWZ4 1543 aa18.62■□□□□ 0.57
LDLR-207ENST00000558013 DNMBPQ6XZF7 1577 aa18.61■□□□□ 0.57
LDLR-207ENST00000558013 DDX10Q13206 875 aaKnown RBP18.57■□□□□ 0.56
LDLR-207ENST00000558013 WDR97A6NE52 1622 aa18.56■□□□□ 0.56
LDLR-207ENST00000558013 URB2Q14146 1524 aaKnown RBP18.54■□□□□ 0.56
LDLR-207ENST00000558013 CFAP43Q8NDM7 1665 aa18.53■□□□□ 0.56
LDLR-207ENST00000558013 CASKIN1Q8WXD9 1431 aa18.53■□□□□ 0.56
LDLR-207ENST00000558013 FYCO1Q9BQS8 1478 aa18.51■□□□□ 0.55
LDLR-207ENST00000558013 SUPT16HQ9Y5B9 1047 aaKnown RBP18.49■□□□□ 0.55
LDLR-207ENST00000558013 PTPRKQ15262 1439 aa18.48■□□□□ 0.55
LDLR-207ENST00000558013 MTUS2Q5JR59 1369 aa18.48■□□□□ 0.55
LDLR-207ENST00000558013 FGD6Q6ZV73 1430 aa18.46■□□□□ 0.55
LDLR-207ENST00000558013 EFCAB5A4FU69 1503 aa18.45■□□□□ 0.54
LDLR-207ENST00000558013 SNAPC4Q5SXM2 1469 aa18.45■□□□□ 0.54
LDLR-207ENST00000558013 ARID3CA6NKF2 412 aa18.45■□□□□ 0.54
LDLR-207ENST00000558013 PPP1R15AO75807 674 aaPredicted RBP18.45■□□□□ 0.54
LDLR-207ENST00000558013 FMN1Q68DA7 1419 aa18.44■□□□□ 0.54
LDLR-207ENST00000558013 CUL7Q14999 1698 aa18.43■□□□□ 0.54
LDLR-207ENST00000558013 GAPVD1Q14C86 1478 aa18.43■□□□□ 0.54
LDLR-207ENST00000558013 CTTNBP2Q8WZ74 1663 aa18.42■□□□□ 0.54
LDLR-207ENST00000558013 AQRO60306 1485 aaKnown RBP eCLIP18.42■□□□□ 0.542e-7■■■■■ 26.9
LDLR-207ENST00000558013 CHIC2Q9UKJ5 165 aa18.4■□□□□ 0.54
LDLR-207ENST00000558013 LRRIQ1Q96JM4 1722 aa18.37■□□□□ 0.53
LDLR-207ENST00000558013 RRP7BPQ9NSQ0 103 aa18.37■□□□□ 0.53
LDLR-207ENST00000558013 NCOA2Q15596 1464 aa18.36■□□□□ 0.53
LDLR-207ENST00000558013 CCDC18Q5T9S5 1454 aa18.36■□□□□ 0.53
LDLR-207ENST00000558013 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.36■□□□□ 0.53
LDLR-207ENST00000558013 LAMC3Q9Y6N6 1575 aa18.35■□□□□ 0.53
LDLR-207ENST00000558013 ABCA5Q8WWZ7 1642 aa18.35■□□□□ 0.53
LDLR-207ENST00000558013 TONSLQ96HA7 1378 aa18.33■□□□□ 0.52
LDLR-207ENST00000558013 GRIN2BQ13224 1484 aa18.33■□□□□ 0.52
LDLR-207ENST00000558013 PDS5BQ9NTI5 1447 aa18.33■□□□□ 0.52
LDLR-207ENST00000558013 BCANQ96GW7 911 aa18.32■□□□□ 0.52
LDLR-207ENST00000558013 TIMELESSQ9UNS1 1208 aa18.32■□□□□ 0.52
LDLR-207ENST00000558013 SAMD9Q5K651 1589 aa18.32■□□□□ 0.52
LDLR-207ENST00000558013 HFM1A2PYH4 1435 aa18.31■□□□□ 0.52
LDLR-207ENST00000558013 NAIPQ13075 1403 aa18.31■□□□□ 0.52
LDLR-207ENST00000558013 MYOM3Q5VTT5 1437 aa18.31■□□□□ 0.52
LDLR-207ENST00000558013 MAGI3Q5TCQ9 1506 aa18.31■□□□□ 0.52
LDLR-207ENST00000558013 TRIM52Q96A61 297 aa18.31■□□□□ 0.52
LDLR-207ENST00000558013 KIF21AQ7Z4S6 1674 aa18.28■□□□□ 0.52
LDLR-207ENST00000558013 PTPN23Q9H3S7 1636 aa18.28■□□□□ 0.52
LDLR-207ENST00000558013 UACAQ9BZF9 1416 aa18.28■□□□□ 0.52
LDLR-207ENST00000558013 FOXD1Q16676 465 aa18.25■□□□□ 0.51
LDLR-207ENST00000558013 ANP32CO43423 234 aa18.23■□□□□ 0.51
LDLR-207ENST00000558013 TARBP1Q13395 1621 aaKnown RBP18.22■□□□□ 0.51
LDLR-207ENST00000558013 FKBP8Q14318 412 aa18.22■□□□□ 0.51
LDLR-207ENST00000558013 CDK13Q14004 1512 aaKnown RBP18.21■□□□□ 0.51
LDLR-207ENST00000558013 SUPT6HQ7KZ85 1726 aaKnown RBP18.2■□□□□ 0.5
LDLR-207ENST00000558013 UGGT2Q9NYU1 1516 aa18.2■□□□□ 0.5
LDLR-207ENST00000558013 EHBP1L1Q8N3D4 1523 aa18.19■□□□□ 0.5
LDLR-207ENST00000558013 TSHZ2Q9NRE2 1034 aa18.18■□□□□ 0.5
LDLR-207ENST00000558013 DENND4BO75064 1496 aaPredicted RBP18.17■□□□□ 0.5
LDLR-207ENST00000558013 KDM6BO15054 1643 aa18.17■□□□□ 0.5
LDLR-207ENST00000558013 KDM5BQ9UGL1 1544 aa18.16■□□□□ 0.5
LDLR-207ENST00000558013 ZNF644Q9H582 1327 aaPredicted RBP18.16■□□□□ 0.5
LDLR-207ENST00000558013 EPRSP07814 1512 aaKnown RBP18.16■□□□□ 0.5
LDLR-207ENST00000558013 ARHGEF11O15085 1522 aa18.15■□□□□ 0.5
LDLR-207ENST00000558013 ZNF608Q9ULD9 1512 aaPredicted RBP18.14■□□□□ 0.49
LDLR-207ENST00000558013 CCER2I3L3R5 266 aa18.14■□□□□ 0.49
LDLR-207ENST00000558013 HSPA5P11021 654 aaKnown RBP18.13■□□□□ 0.49
LDLR-207ENST00000558013 MPHOSPH9Q99550 1183 aa18.13■□□□□ 0.49
LDLR-207ENST00000558013 THOC2Q8NI27 1593 aaKnown RBP18.12■□□□□ 0.49
LDLR-207ENST00000558013 IQGAP2Q13576 1575 aa18.12■□□□□ 0.49
LDLR-207ENST00000558013 WASHC2AQ641Q2 1341 aa18.11■□□□□ 0.49
LDLR-207ENST00000558013 L3MBTL2Q969R5 705 aa18.1■□□□□ 0.49
LDLR-207ENST00000558013 PBRM1Q86U86 1689 aa18.09■□□□□ 0.49
LDLR-207ENST00000558013 TCOF1Q13428 1488 aaKnown RBP18.08■□□□□ 0.48
LDLR-207ENST00000558013 HECW1Q76N89 1606 aa18.07■□□□□ 0.48
LDLR-207ENST00000558013 C11orf95C9JLR9 678 aaPredicted RBP18.07■□□□□ 0.48
LDLR-207ENST00000558013 ADAMTS12P58397 1594 aa18.07■□□□□ 0.48
LDLR-207ENST00000558013 CCDC184Q52MB2 194 aa18.05■□□□□ 0.48
LDLR-207ENST00000558013 WDR62O43379 1518 aa18.05■□□□□ 0.48
LDLR-207ENST00000558013 MRC2Q9UBG0 1479 aa18.03■□□□□ 0.48
LDLR-207ENST00000558013 HNRNPUQ00839 825 aaKnown RBP eCLIP18.03■□□□□ 0.48
LDLR-207ENST00000558013 NBPF8Q3BBV2 869 aa18.02■□□□□ 0.48
LDLR-207ENST00000558013 EIF4G2P78344 907 aaKnown RBP eCLIP18.01■□□□□ 0.47
LDLR-207ENST00000558013 MIA2Q96PC5 1412 aa18■□□□□ 0.47
LDLR-207ENST00000558013 IRX6P78412 446 aaPredicted RBP18■□□□□ 0.47
LDLR-207ENST00000558013 FBLN2P98095 1184 aa18■□□□□ 0.47
LDLR-207ENST00000558013 DISP1Q96F81 1524 aa18■□□□□ 0.47
LDLR-207ENST00000558013 NEFLP07196 543 aa17.99■□□□□ 0.47
LDLR-207ENST00000558013 ABCC5O15440 1437 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms