RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 KIF27Q86VH2 1401 aa18.02■□□□□ 0.48
LDLR-205ENST00000557933 ABCA5Q8WWZ7 1642 aa18■□□□□ 0.47
LDLR-205ENST00000557933 ERICH3Q5RHP9 1530 aa18■□□□□ 0.47
LDLR-205ENST00000557933 VPS8Q8N3P4 1428 aa17.98■□□□□ 0.47
LDLR-205ENST00000557933 HIRIP3Q9BW71 556 aaPredicted RBP17.98■□□□□ 0.47
LDLR-205ENST00000557933 ERCC6Q03468 1493 aa17.97■□□□□ 0.47
LDLR-205ENST00000557933 IFT140Q96RY7 1462 aa17.94■□□□□ 0.46
LDLR-205ENST00000557933 PRXQ9BXM0 1461 aa17.94■□□□□ 0.46
LDLR-205ENST00000557933 CUL7Q14999 1698 aa17.94■□□□□ 0.46
LDLR-205ENST00000557933 DHX57Q6P158 1386 aaKnown RBP17.93■□□□□ 0.46
LDLR-205ENST00000557933 CUX2O14529 1486 aa17.93■□□□□ 0.46
LDLR-205ENST00000557933 MYT1Q01538 1121 aa17.88■□□□□ 0.45
LDLR-205ENST00000557933 RAD54L2Q9Y4B4 1467 aa17.88■□□□□ 0.45
LDLR-205ENST00000557933 ATP1B4Q9UN42 357 aaPredicted RBP17.86■□□□□ 0.45
LDLR-205ENST00000557933 PBRM1Q86U86 1689 aa17.86■□□□□ 0.45
LDLR-205ENST00000557933 TSHZ2Q9NRE2 1034 aa17.85■□□□□ 0.45
LDLR-205ENST00000557933 DDX10Q13206 875 aaKnown RBP17.84■□□□□ 0.45
LDLR-205ENST00000557933 IGF1RP08069 1367 aa17.83■□□□□ 0.44
LDLR-205ENST00000557933 SIN3AQ96ST3 1273 aa17.82■□□□□ 0.44
LDLR-205ENST00000557933 GAPVD1Q14C86 1478 aa17.8■□□□□ 0.44
LDLR-205ENST00000557933 P3H3Q8IVL6 736 aa17.79■□□□□ 0.44
LDLR-205ENST00000557933 TRIM52Q96A61 297 aa17.78■□□□□ 0.44
LDLR-205ENST00000557933 FKBP8Q14318 412 aa17.78■□□□□ 0.44
LDLR-205ENST00000557933 EIF4G3O43432 1585 aaKnown RBP17.76■□□□□ 0.43
LDLR-205ENST00000557933 FAM50AQ14320 339 aaKnown RBP17.75■□□□□ 0.43
LDLR-205ENST00000557933 GRIN2BQ13224 1484 aa17.74■□□□□ 0.43
LDLR-205ENST00000557933 ADAMTS12P58397 1594 aa17.74■□□□□ 0.43
LDLR-205ENST00000557933 ARAP1Q96P48 1450 aa17.73■□□□□ 0.43
LDLR-205ENST00000557933 CARMIL1Q5VZK9 1371 aa17.71■□□□□ 0.43
LDLR-205ENST00000557933 CTTNBP2Q8WZ74 1663 aa17.7■□□□□ 0.42
LDLR-205ENST00000557933 MAGI1Q96QZ7 1491 aaPredicted RBP17.68■□□□□ 0.42
LDLR-205ENST00000557933 FHAD1B1AJZ9 1412 aa17.67■□□□□ 0.42
LDLR-205ENST00000557933 RAB3GAP2Q9H2M9 1393 aa17.66■□□□□ 0.42
LDLR-205ENST00000557933 ZNF608Q9ULD9 1512 aaPredicted RBP17.65■□□□□ 0.42
LDLR-205ENST00000557933 CCNB3Q8WWL7 1395 aa17.65■□□□□ 0.42
LDLR-205ENST00000557933 TDRD9Q8NDG6 1382 aaKnown RBP17.65■□□□□ 0.42
LDLR-205ENST00000557933 IRX6P78412 446 aaPredicted RBP17.64■□□□□ 0.41
LDLR-205ENST00000557933 AQRO60306 1485 aaKnown RBP eCLIP17.61■□□□□ 0.412e-7■■■■■ 26.9
LDLR-205ENST00000557933 ANP32EQ9BTT0 268 aa17.59■□□□□ 0.41
LDLR-205ENST00000557933 CLSPNQ9HAW4 1339 aa17.58■□□□□ 0.41
LDLR-205ENST00000557933 EFCAB5A4FU69 1503 aa17.56■□□□□ 0.4
LDLR-205ENST00000557933 SNAPC4Q5SXM2 1469 aa17.55■□□□□ 0.4
LDLR-205ENST00000557933 SYNJ2O15056 1496 aa17.55■□□□□ 0.4
LDLR-205ENST00000557933 RRBP1Q9P2E9 1410 aaKnown RBP17.52■□□□□ 0.4
LDLR-205ENST00000557933 ARHGAP35Q9NRY4 1499 aa17.52■□□□□ 0.39
LDLR-205ENST00000557933 SAMD9Q5K651 1589 aa17.51■□□□□ 0.39
LDLR-205ENST00000557933 CNGB1Q14028 1251 aaPredicted RBP17.51■□□□□ 0.39
LDLR-205ENST00000557933 GRIN2AQ12879 1464 aa17.51■□□□□ 0.39
LDLR-205ENST00000557933 NEFLP07196 543 aa17.5■□□□□ 0.39
LDLR-205ENST00000557933 RBM19Q9Y4C8 960 aaKnown RBP17.48■□□□□ 0.39
LDLR-205ENST00000557933 PHLDB1Q86UU1 1377 aa17.48■□□□□ 0.39
LDLR-205ENST00000557933 MAPKBP1O60336 1514 aa17.48■□□□□ 0.39
LDLR-205ENST00000557933 IQGAP2Q13576 1575 aa17.47■□□□□ 0.39
LDLR-205ENST00000557933 SENP3-EIF4A1A0A087X0R7 540 aa17.46■□□□□ 0.39
LDLR-205ENST00000557933 NUP160Q12769 1436 aa17.46■□□□□ 0.39
LDLR-205ENST00000557933 UGGT2Q9NYU1 1516 aa17.45■□□□□ 0.38
LDLR-205ENST00000557933 KIAA0586Q9BVV6 1533 aa17.44■□□□□ 0.38
LDLR-205ENST00000557933 ANP32CO43423 234 aa17.44■□□□□ 0.38
LDLR-205ENST00000557933 PPP1R15AO75807 674 aaPredicted RBP17.43■□□□□ 0.38
LDLR-205ENST00000557933 BCL11AQ9H165 835 aa17.42■□□□□ 0.38
LDLR-205ENST00000557933 SETD5Q9C0A6 1442 aa17.41■□□□□ 0.38
LDLR-205ENST00000557933 CEP170Q5SW79 1584 aa17.41■□□□□ 0.38
LDLR-205ENST00000557933 HNRNPUQ00839 825 aaKnown RBP eCLIP17.39■□□□□ 0.37
LDLR-205ENST00000557933 CHD1O14646 1710 aa17.39■□□□□ 0.37
LDLR-205ENST00000557933 ARID3CA6NKF2 412 aa17.37■□□□□ 0.37
LDLR-205ENST00000557933 MAP3K1Q13233 1512 aa17.37■□□□□ 0.37
LDLR-205ENST00000557933 MSH5O43196 834 aa17.34■□□□□ 0.37
LDLR-205ENST00000557933 SHROOM2Q13796 1616 aa17.34■□□□□ 0.37
LDLR-205ENST00000557933 CHIC2Q9UKJ5 165 aa17.33■□□□□ 0.36
LDLR-205ENST00000557933 FHOD3Q2V2M9 1422 aa17.32■□□□□ 0.36
LDLR-205ENST00000557933 KIAA0556O60303 1618 aa17.31■□□□□ 0.36
LDLR-205ENST00000557933 TONSLQ96HA7 1378 aa17.3■□□□□ 0.36
LDLR-205ENST00000557933 CCDC184Q52MB2 194 aa17.29■□□□□ 0.36
LDLR-205ENST00000557933 FYCO1Q9BQS8 1478 aa17.28■□□□□ 0.36
LDLR-205ENST00000557933 CLASP1Q7Z460 1538 aa17.28■□□□□ 0.36
LDLR-205ENST00000557933 CFAP43Q8NDM7 1665 aa17.28■□□□□ 0.36
LDLR-205ENST00000557933 LRRC9Q6ZRR7 1453 aa17.28■□□□□ 0.36
LDLR-205ENST00000557933 FMN1Q68DA7 1419 aa17.28■□□□□ 0.36
LDLR-205ENST00000557933 DISP1Q96F81 1524 aa17.26■□□□□ 0.35
LDLR-205ENST00000557933 FOXD1Q16676 465 aa17.26■□□□□ 0.35
LDLR-205ENST00000557933 RRP7BPQ9NSQ0 103 aa17.26■□□□□ 0.35
LDLR-205ENST00000557933 CHMP7Q8WUX9 453 aaPredicted RBP17.25■□□□□ 0.35
LDLR-205ENST00000557933 TIAM1Q13009 1591 aa17.25■□□□□ 0.35
LDLR-205ENST00000557933 FAM9BQ8IZU0 186 aa17.24■□□□□ 0.35
LDLR-205ENST00000557933 CASKIN1Q8WXD9 1431 aa17.24■□□□□ 0.35
LDLR-205ENST00000557933 PCF11O94913 1555 aaKnown RBP17.23■□□□□ 0.35
LDLR-205ENST00000557933 POLR3GLQ9BT43 218 aa17.2■□□□□ 0.34
LDLR-205ENST00000557933 B4GALNT3Q6L9W6 998 aa17.2■□□□□ 0.34
LDLR-205ENST00000557933 ERICH6Q7L0X2 663 aa17.18■□□□□ 0.34
LDLR-205ENST00000557933 HECW1Q76N89 1606 aa17.18■□□□□ 0.34
LDLR-205ENST00000557933 CCER2I3L3R5 266 aa17.18■□□□□ 0.34
LDLR-205ENST00000557933 CARMIL2Q6F5E8 1435 aa17.16■□□□□ 0.34
LDLR-205ENST00000557933 PTPRKQ15262 1439 aa17.15■□□□□ 0.34
LDLR-205ENST00000557933 HSPA5P11021 654 aaKnown RBP17.15■□□□□ 0.34
LDLR-205ENST00000557933 CCDC18Q5T9S5 1454 aa17.14■□□□□ 0.34
LDLR-205ENST00000557933 LRRIQ1Q96JM4 1722 aa17.14■□□□□ 0.33
LDLR-205ENST00000557933 CDK11AQ9UQ88 783 aaPredicted RBP17.14■□□□□ 0.33
LDLR-205ENST00000557933 WASHC2AQ641Q2 1341 aa17.13■□□□□ 0.33
LDLR-205ENST00000557933 MTUS2Q5JR59 1369 aa17.13■□□□□ 0.33
LDLR-205ENST00000557933 RAPGEF6Q8TEU7 1601 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms