RNA–Protein interactions for RNA: ENST00000555890.5

SLIRP-204, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 471 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-204ENST00000555890 CHD1O14646 1710 aa12.16□□□□□ -0.46
SLIRP-204ENST00000555890 IFT140Q96RY7 1462 aa12.13□□□□□ -0.47
SLIRP-204ENST00000555890 MROH2BQ7Z745 1585 aa12.12□□□□□ -0.47
SLIRP-204ENST00000555890 FANCD2Q9BXW9 1451 aa12.11□□□□□ -0.47
SLIRP-204ENST00000555890 AMER1Q5JTC6 1135 aaPredicted RBP12.11□□□□□ -0.47
SLIRP-204ENST00000555890 CLASP1Q7Z460 1538 aa12.11□□□□□ -0.47
SLIRP-204ENST00000555890 IFFO2Q5TF58 517 aa12.09□□□□□ -0.47
SLIRP-204ENST00000555890 URB2Q14146 1524 aaKnown RBP12.08□□□□□ -0.48
SLIRP-204ENST00000555890 ABCC10Q5T3U5 1492 aa12.08□□□□□ -0.48
SLIRP-204ENST00000555890 RTN4Q9NQC3 1192 aaKnown RBP12.06□□□□□ -0.48
SLIRP-204ENST00000555890 DSG3P32926 999 aa12.01□□□□□ -0.49
SLIRP-204ENST00000555890 TOP2BQ02880 1626 aa12□□□□□ -0.49
SLIRP-204ENST00000555890 EIF4G3O43432 1585 aaKnown RBP11.99□□□□□ -0.49
SLIRP-204ENST00000555890 CAPN15O75808 1086 aa11.98□□□□□ -0.49
SLIRP-204ENST00000555890 CFTRP13569 1480 aa11.97□□□□□ -0.49
SLIRP-204ENST00000555890 SYNJ1O43426 1573 aa11.96□□□□□ -0.49
SLIRP-204ENST00000555890 CHMP7Q8WUX9 453 aaPredicted RBP11.96□□□□□ -0.49
SLIRP-204ENST00000555890 AQRO60306 1485 aaKnown RBP eCLIP11.95□□□□□ -0.52e-9■□□□□ 10.8
SLIRP-204ENST00000555890 WIZO95785 1651 aa11.92□□□□□ -0.5
SLIRP-204ENST00000555890 NPM1P06748 294 aaKnown RBP eCLIP11.9□□□□□ -0.5
SLIRP-204ENST00000555890 PCF11O94913 1555 aaKnown RBP11.89□□□□□ -0.51
SLIRP-204ENST00000555890 DIP2BQ9P265 1576 aa11.88□□□□□ -0.51
SLIRP-204ENST00000555890 SUPT5HO00267 1087 aaKnown RBP11.87□□□□□ -0.51
SLIRP-204ENST00000555890 SPINK5Q9NQ38 1064 aaPredicted RBP11.87□□□□□ -0.51
SLIRP-204ENST00000555890 ATXN8OSP0DMR3 200 aa11.86□□□□□ -0.51
SLIRP-204ENST00000555890 U3KPZ7 1027 aaPredicted RBP11.86□□□□□ -0.51
SLIRP-204ENST00000555890 SNAPC4Q5SXM2 1469 aa11.84□□□□□ -0.51
SLIRP-204ENST00000555890 SLC4A2P04920 1241 aa11.83□□□□□ -0.52
SLIRP-204ENST00000555890 HSPA2P54652 639 aa11.83□□□□□ -0.52
SLIRP-204ENST00000555890 SRCAPQ6ZRS2 3230 aa11.82□□□□□ -0.52
SLIRP-204ENST00000555890 MED1Q15648 1581 aaPredicted RBP11.81□□□□□ -0.52
SLIRP-204ENST00000555890 MAPKBP1O60336 1514 aa11.79□□□□□ -0.52
SLIRP-204ENST00000555890 TOPBP1Q92547 1522 aa11.79□□□□□ -0.52
SLIRP-204ENST00000555890 PTPRMP28827 1452 aa11.78□□□□□ -0.52
SLIRP-204ENST00000555890 MYCNP04198 464 aaPredicted RBP11.78□□□□□ -0.52
SLIRP-204ENST00000555890 FKBP8Q14318 412 aa11.78□□□□□ -0.52
SLIRP-204ENST00000555890 TSPOAP1O95153 1857 aa11.77□□□□□ -0.53
SLIRP-204ENST00000555890 TARBP1Q13395 1621 aaKnown RBP11.75□□□□□ -0.53
SLIRP-204ENST00000555890 COL17A1Q9UMD9 1497 aaPredicted RBP11.74□□□□□ -0.53
SLIRP-204ENST00000555890 PRDM2Q13029 1718 aa11.72□□□□□ -0.53
SLIRP-204ENST00000555890 TOP2AP11388 1531 aaKnown RBP11.69□□□□□ -0.54
SLIRP-204ENST00000555890 IQSEC2Q5JU85 1478 aa11.66□□□□□ -0.54
SLIRP-204ENST00000555890 APLP2Q06481 763 aa11.66□□□□□ -0.54
SLIRP-204ENST00000555890 ABCC8Q09428 1581 aa11.66□□□□□ -0.54
SLIRP-204ENST00000555890 DNMBPQ6XZF7 1577 aa11.66□□□□□ -0.54
SLIRP-204ENST00000555890 UBAP1LF5GYI3 381 aa11.65□□□□□ -0.54
SLIRP-204ENST00000555890 MAGI1Q96QZ7 1491 aaPredicted RBP11.64□□□□□ -0.55
SLIRP-204ENST00000555890 TDRD9Q8NDG6 1382 aaKnown RBP11.64□□□□□ -0.55
SLIRP-204ENST00000555890 POLA1P09884 1462 aaPredicted RBP11.63□□□□□ -0.55
SLIRP-204ENST00000555890 CCDC88BA6NC98 1476 aa11.63□□□□□ -0.55
SLIRP-204ENST00000555890 RAD54L2Q9Y4B4 1467 aa11.63□□□□□ -0.55
SLIRP-204ENST00000555890 ZNF219Q9P2Y4 722 aaPredicted RBP11.61□□□□□ -0.55
SLIRP-204ENST00000555890 HSPA1LP34931 641 aa11.59□□□□□ -0.55
SLIRP-204ENST00000555890 RBM42Q9BTD8 480 aaKnown RBP11.59□□□□□ -0.55
SLIRP-204ENST00000555890 CEP170Q5SW79 1584 aa11.58□□□□□ -0.55
SLIRP-204ENST00000555890 ABCB7O75027 752 aa11.58□□□□□ -0.56
SLIRP-204ENST00000555890 PTPRTO14522 1441 aa11.56□□□□□ -0.56
SLIRP-204ENST00000555890 SOGA1O94964 1423 aa11.56□□□□□ -0.56
SLIRP-204ENST00000555890 LTBP4Q8N2S1 1624 aa11.55□□□□□ -0.56
SLIRP-204ENST00000555890 YEATS2Q9ULM3 1422 aa11.54□□□□□ -0.56
SLIRP-204ENST00000555890 CHRDL2Q6WN34 429 aa11.52□□□□□ -0.57
SLIRP-204ENST00000555890 RGS17Q9UGC6 210 aaPredicted RBP11.52□□□□□ -0.57
SLIRP-204ENST00000555890 PPRC1Q5VV67 1664 aaKnown RBP11.5□□□□□ -0.57
SLIRP-204ENST00000555890 GRIN2BQ13224 1484 aa11.5□□□□□ -0.57
SLIRP-204ENST00000555890 WDR97A6NE52 1622 aa11.49□□□□□ -0.57
SLIRP-204ENST00000555890 ADAMTSL3P82987 1691 aa11.49□□□□□ -0.57
SLIRP-204ENST00000555890 TEX14Q8IWB6 1497 aa11.49□□□□□ -0.57
SLIRP-204ENST00000555890 FGD5Q6ZNL6 1462 aa11.46□□□□□ -0.57
SLIRP-204ENST00000555890 SP7Q8TDD2 431 aaPredicted RBP11.46□□□□□ -0.57
SLIRP-204ENST00000555890 UPF1Q92900 1129 aaKnown RBP eCLIP11.46□□□□□ -0.57
SLIRP-204ENST00000555890 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.45□□□□□ -0.58
SLIRP-204ENST00000555890 HNRNPUL2Q1KMD3 747 aaKnown RBP11.45□□□□□ -0.58
SLIRP-204ENST00000555890 KIF21BO75037 1637 aa11.44□□□□□ -0.58
SLIRP-204ENST00000555890 GLI2P10070 1586 aa11.44□□□□□ -0.58
SLIRP-204ENST00000555890 PRG4Q92954 1404 aaPredicted RBP11.43□□□□□ -0.58
SLIRP-204ENST00000555890 ADCY10Q96PN6 1610 aa11.41□□□□□ -0.58
SLIRP-204ENST00000555890 POTEAQ6S8J7 498 aa11.4□□□□□ -0.58
SLIRP-204ENST00000555890 CUX1P39880 1505 aa11.4□□□□□ -0.59
SLIRP-204ENST00000555890 SHROOM2Q13796 1616 aa11.39□□□□□ -0.59
SLIRP-204ENST00000555890 PBRM1Q86U86 1689 aa11.39□□□□□ -0.59
SLIRP-204ENST00000555890 NUP160Q12769 1436 aa11.38□□□□□ -0.59
SLIRP-204ENST00000555890 SLC34A2O95436 690 aa11.38□□□□□ -0.59
SLIRP-204ENST00000555890 PIP4K2BP78356 416 aa11.38□□□□□ -0.59
SLIRP-204ENST00000555890 RBM33Q96EV2 1170 aaKnown RBP11.38□□□□□ -0.59
SLIRP-204ENST00000555890 PCDH10Q9P2E7 1040 aa11.38□□□□□ -0.59
SLIRP-204ENST00000555890 ARID4BQ4LE39 1312 aaPredicted RBP11.36□□□□□ -0.59
SLIRP-204ENST00000555890 ATF5Q9Y2D1 282 aaPredicted RBP11.36□□□□□ -0.59
SLIRP-204ENST00000555890 PLB1Q6P1J6 1458 aa11.36□□□□□ -0.59
SLIRP-204ENST00000555890 MADDQ8WXG6 1647 aa11.35□□□□□ -0.59
SLIRP-204ENST00000555890 GRIN2AQ12879 1464 aa11.35□□□□□ -0.59
SLIRP-204ENST00000555890 SAMD1Q6SPF0 538 aaPredicted RBP11.34□□□□□ -0.59
SLIRP-204ENST00000555890 JPH4Q96JJ6 628 aa11.34□□□□□ -0.59
SLIRP-204ENST00000555890 ABCA5Q8WWZ7 1642 aa11.34□□□□□ -0.59
SLIRP-204ENST00000555890 ASXL2Q76L83 1435 aa11.33□□□□□ -0.6
SLIRP-204ENST00000555890 ABCA10Q8WWZ4 1543 aa11.31□□□□□ -0.6
SLIRP-204ENST00000555890 TOM1O60784 492 aa11.31□□□□□ -0.6
SLIRP-204ENST00000555890 KIAA0586Q9BVV6 1533 aa11.3□□□□□ -0.6
SLIRP-204ENST00000555890 STRCQ7RTU9 1775 aa11.28□□□□□ -0.6
SLIRP-204ENST00000555890 CFAP43Q8NDM7 1665 aa11.27□□□□□ -0.6
SLIRP-204ENST00000555890 ADAMTS12P58397 1594 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms