RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 ZBTB12Q9Y330 459 aaPredicted RBP14.18□□□□□ -0.14
NEK3-201ENST00000550331 PITPNM1O00562 1244 aa14.16□□□□□ -0.14
NEK3-201ENST00000550331 ZNF608Q9ULD9 1512 aaPredicted RBP14.15□□□□□ -0.14
NEK3-201ENST00000550331 IFT140Q96RY7 1462 aa14.13□□□□□ -0.15
NEK3-201ENST00000550331 MYCNP04198 464 aaPredicted RBP14.13□□□□□ -0.15
NEK3-201ENST00000550331 EVX2Q03828 476 aa14.13□□□□□ -0.15
NEK3-201ENST00000550331 CYB5RLQ6IPT4 315 aa14.1□□□□□ -0.15
NEK3-201ENST00000550331 ABCC8Q09428 1581 aa14.09□□□□□ -0.15
NEK3-201ENST00000550331 TOPBP1Q92547 1522 aa14.09□□□□□ -0.15
NEK3-201ENST00000550331 EIF4G3O43432 1585 aaKnown RBP14.09□□□□□ -0.15
NEK3-201ENST00000550331 CHD1O14646 1710 aa14.08□□□□□ -0.16
NEK3-201ENST00000550331 KCNA4P22459 653 aa14.06□□□□□ -0.16
NEK3-201ENST00000550331 DNMBPQ6XZF7 1577 aa14.05□□□□□ -0.16
NEK3-201ENST00000550331 ARAP1Q96P48 1450 aa14.03□□□□□ -0.16
NEK3-201ENST00000550331 LHX8Q68G74 356 aa14.01□□□□□ -0.17
NEK3-201ENST00000550331 AQRO60306 1485 aaKnown RBP eCLIP13.98□□□□□ -0.173e-8■□□□□ 10.5
NEK3-201ENST00000550331 TARBP1Q13395 1621 aaKnown RBP13.97□□□□□ -0.17
NEK3-201ENST00000550331 FBLN2P98095 1184 aa13.97□□□□□ -0.17
NEK3-201ENST00000550331 POLA1P09884 1462 aaPredicted RBP13.95□□□□□ -0.18
NEK3-201ENST00000550331 SOGA1O94964 1423 aa13.88□□□□□ -0.19
NEK3-201ENST00000550331 RAD54L2Q9Y4B4 1467 aa13.87□□□□□ -0.19
NEK3-201ENST00000550331 WDR97A6NE52 1622 aa13.86□□□□□ -0.19
NEK3-201ENST00000550331 PLSCR2Q9NRY7 297 aa13.86□□□□□ -0.19
NEK3-201ENST00000550331 FGD5Q6ZNL6 1462 aa13.86□□□□□ -0.19
NEK3-201ENST00000550331 CLASP1Q7Z460 1538 aa13.85□□□□□ -0.19
NEK3-201ENST00000550331 CUX1P39880 1505 aa13.84□□□□□ -0.19
NEK3-201ENST00000550331 TDRD9Q8NDG6 1382 aaKnown RBP13.83□□□□□ -0.19
NEK3-201ENST00000550331 SNAPC4Q5SXM2 1469 aa13.83□□□□□ -0.2
NEK3-201ENST00000550331 SYNJ1O43426 1573 aa13.83□□□□□ -0.2
NEK3-201ENST00000550331 C19orf67A6NJJ6 358 aa13.82□□□□□ -0.2
NEK3-201ENST00000550331 GABBR2O75899 941 aa13.82□□□□□ -0.2
NEK3-201ENST00000550331 CHMP7Q8WUX9 453 aaPredicted RBP13.8□□□□□ -0.2
NEK3-201ENST00000550331 MAGI1Q96QZ7 1491 aaPredicted RBP13.79□□□□□ -0.2
NEK3-201ENST00000550331 PRKAR2AP13861 404 aaKnown RBP13.78□□□□□ -0.2
NEK3-201ENST00000550331 GRIN2BQ13224 1484 aa13.78□□□□□ -0.2
NEK3-201ENST00000550331 ATF5Q9Y2D1 282 aaPredicted RBP13.77□□□□□ -0.21
NEK3-201ENST00000550331 SYNJ2O15056 1496 aa13.74□□□□□ -0.21
NEK3-201ENST00000550331 SUPT5HO00267 1087 aaKnown RBP13.73□□□□□ -0.21
NEK3-201ENST00000550331 GAPVD1Q14C86 1478 aa13.73□□□□□ -0.21
NEK3-201ENST00000550331 PBRM1Q86U86 1689 aa13.72□□□□□ -0.21
NEK3-201ENST00000550331 ABCA10Q8WWZ4 1543 aa13.72□□□□□ -0.21
NEK3-201ENST00000550331 ABCA5Q8WWZ7 1642 aa13.68□□□□□ -0.22
NEK3-201ENST00000550331 WRNQ14191 1432 aaPredicted RBP eCLIP13.66□□□□□ -0.22
NEK3-201ENST00000550331 SPDYE2BA6NHP3 402 aa13.64□□□□□ -0.23
NEK3-201ENST00000550331 SPDYE6P0CI01 402 aa13.64□□□□□ -0.23
NEK3-201ENST00000550331 SPDYE2Q495Y8 402 aa13.64□□□□□ -0.23
NEK3-201ENST00000550331 TOP2BQ02880 1626 aa13.62□□□□□ -0.23
NEK3-201ENST00000550331 ERCC6L2Q5T890 1561 aa13.62□□□□□ -0.23
NEK3-201ENST00000550331 BIVM-ERCC5R4GMW8 1640 aa13.61□□□□□ -0.23
NEK3-201ENST00000550331 SPDYE1Q8NFV5 336 aaPredicted RBP13.61□□□□□ -0.23
NEK3-201ENST00000550331 GRIN2AQ12879 1464 aa13.61□□□□□ -0.23
NEK3-201ENST00000550331 ADAMTS12P58397 1594 aa13.58□□□□□ -0.23
NEK3-201ENST00000550331 KIF13AQ9H1H9 1805 aa13.58□□□□□ -0.24
NEK3-201ENST00000550331 CLEC11AQ9Y240 323 aa13.58□□□□□ -0.24
NEK3-201ENST00000550331 CEP170Q5SW79 1584 aa13.57□□□□□ -0.24
NEK3-201ENST00000550331 NUP160Q12769 1436 aa13.56□□□□□ -0.24
NEK3-201ENST00000550331 FHAD1B1AJZ9 1412 aa13.56□□□□□ -0.24
NEK3-201ENST00000550331 ERICH3Q5RHP9 1530 aa13.55□□□□□ -0.24
NEK3-201ENST00000550331 SHROOM2Q13796 1616 aa13.53□□□□□ -0.24
NEK3-201ENST00000550331 POTEIP0CG38 1075 aa13.49□□□□□ -0.25
NEK3-201ENST00000550331 FOXD4L1Q9NU39 408 aa13.47□□□□□ -0.25
NEK3-201ENST00000550331 PRG4Q92954 1404 aaPredicted RBP13.43□□□□□ -0.26
NEK3-201ENST00000550331 CLCN6P51797 869 aa13.41□□□□□ -0.26
NEK3-201ENST00000550331 FAM69CQ0P6D2 419 aa13.41□□□□□ -0.26
NEK3-201ENST00000550331 ABCC10Q5T3U5 1492 aa13.4□□□□□ -0.26
NEK3-201ENST00000550331 RUSC2Q8N2Y8 1516 aa13.39□□□□□ -0.27
NEK3-201ENST00000550331 CHADLQ6NUI6 762 aa13.39□□□□□ -0.27
NEK3-201ENST00000550331 JPH4Q96JJ6 628 aa13.39□□□□□ -0.27
NEK3-201ENST00000550331 DIP2BQ9P265 1576 aa13.39□□□□□ -0.27
NEK3-201ENST00000550331 TSPOAP1O95153 1857 aa13.38□□□□□ -0.27
NEK3-201ENST00000550331 NPM1P06748 294 aaKnown RBP eCLIP13.38□□□□□ -0.27
NEK3-201ENST00000550331 KDM6BO15054 1643 aa13.38□□□□□ -0.27
NEK3-201ENST00000550331 KIF27Q86VH2 1401 aa13.38□□□□□ -0.27
NEK3-201ENST00000550331 MAPKBP1O60336 1514 aa13.37□□□□□ -0.27
NEK3-201ENST00000550331 IGF1RP08069 1367 aa13.35□□□□□ -0.27
NEK3-201ENST00000550331 KDM4FA0A1W2PPD8 638 aa13.35□□□□□ -0.27
NEK3-201ENST00000550331 ADCY10Q96PN6 1610 aa13.35□□□□□ -0.27
NEK3-201ENST00000550331 CUL7Q14999 1698 aa13.34□□□□□ -0.27
NEK3-201ENST00000550331 KIAA0586Q9BVV6 1533 aa13.34□□□□□ -0.27
NEK3-201ENST00000550331 ILDR1Q86SU0 546 aaPredicted RBP13.32□□□□□ -0.28
NEK3-201ENST00000550331 SSUH2Q9Y2M2 353 aa13.32□□□□□ -0.28
NEK3-201ENST00000550331 CD44P16070 742 aaKnown RBP13.3□□□□□ -0.28
NEK3-201ENST00000550331 DCBLD2Q96PD2 775 aa13.28□□□□□ -0.28
NEK3-201ENST00000550331 ZNF692Q9BU19 519 aaPredicted RBP13.27□□□□□ -0.29
NEK3-201ENST00000550331 CARMIL1Q5VZK9 1371 aa13.26□□□□□ -0.29
NEK3-201ENST00000550331 PRR29P0C7W0 189 aa13.25□□□□□ -0.29
NEK3-201ENST00000550331 POTEMA6NI47 508 aa13.24□□□□□ -0.29
NEK3-201ENST00000550331 CARMIL2Q6F5E8 1435 aa13.21□□□□□ -0.3
NEK3-201ENST00000550331 PTPRGP23470 1445 aa13.2□□□□□ -0.3
NEK3-201ENST00000550331 IQGAP2Q13576 1575 aa13.2□□□□□ -0.3
NEK3-201ENST00000550331 PPRC1Q5VV67 1664 aaKnown RBP13.19□□□□□ -0.3
NEK3-201ENST00000550331 ADGRL1O94910 1474 aa13.19□□□□□ -0.3
NEK3-201ENST00000550331 ATXN8OSP0DMR3 200 aa13.19□□□□□ -0.3
NEK3-201ENST00000550331 TNIKQ9UKE5 1360 aa13.19□□□□□ -0.3
NEK3-201ENST00000550331 TTBK1Q5TCY1 1321 aaPredicted RBP13.18□□□□□ -0.3
NEK3-201ENST00000550331 OTUD5Q96G74 571 aa13.18□□□□□ -0.3
NEK3-201ENST00000550331 POTEGQ6S5H5 508 aa13.17□□□□□ -0.3
NEK3-201ENST00000550331 PCDH10Q9P2E7 1040 aa13.16□□□□□ -0.3
NEK3-201ENST00000550331 RAPGEF2Q9Y4G8 1499 aa13.16□□□□□ -0.3
NEK3-201ENST00000550331 GLI2P10070 1586 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms