RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 AEBP2Q6ZN18 517 aaPredicted RBP26.17■■□□□ 1.78
NEK3-201ENST00000550331 CHIC1Q5VXU3 224 aa24.55■■□□□ 1.52
NEK3-201ENST00000550331 SENP3Q9H4L4 574 aaPredicted RBP22.57■■□□□ 1.2
NEK3-201ENST00000550331 PHF23Q9BUL5 403 aaPredicted RBP22.09■■□□□ 1.13
NEK3-201ENST00000550331 POTEDQ86YR6 584 aa21.16■□□□□ 0.98
NEK3-201ENST00000550331 FOXD1Q16676 465 aa21.08■□□□□ 0.97
NEK3-201ENST00000550331 MSH5O43196 834 aa20.17■□□□□ 0.82
NEK3-201ENST00000550331 PIAS4Q8N2W9 510 aaPredicted RBP19.49■□□□□ 0.71
NEK3-201ENST00000550331 NISCHQ9Y2I1 1504 aa19.14■□□□□ 0.65
NEK3-201ENST00000550331 PPP6R1Q9UPN7 881 aa18.96■□□□□ 0.63
NEK3-201ENST00000550331 ADRA2BP18089 450 aa18.85■□□□□ 0.61
NEK3-201ENST00000550331 PLPPR3Q6T4P5 718 aa18.81■□□□□ 0.6
NEK3-201ENST00000550331 CACNB1Q02641 598 aaPredicted RBP17.8■□□□□ 0.44
NEK3-201ENST00000550331 DMRT2Q9Y5R5 561 aa17.73■□□□□ 0.43
NEK3-201ENST00000550331 MAPK8IP2Q13387 824 aaPredicted RBP17.56■□□□□ 0.4
NEK3-201ENST00000550331 ABCC9O60706 1549 aa17.44■□□□□ 0.38
NEK3-201ENST00000550331 SCAF1Q9H7N4 1312 aaKnown RBP17.36■□□□□ 0.37
NEK3-201ENST00000550331 CCDC180Q9P1Z9 1646 aa17.18■□□□□ 0.34
NEK3-201ENST00000550331 RNF39Q9H2S5 420 aa17.08■□□□□ 0.32
NEK3-201ENST00000550331 DCAF8L1A6NGE4 600 aa17■□□□□ 0.31
NEK3-201ENST00000550331 C1QBPQ07021 282 aaKnown RBP16.81■□□□□ 0.28
NEK3-201ENST00000550331 HOXD11P31277 338 aaPredicted RBP16.73■□□□□ 0.27
NEK3-201ENST00000550331 DNAJC5BQ9UF47 199 aa16.62■□□□□ 0.25
NEK3-201ENST00000550331 RB1CC1Q8TDY2 1594 aa16.47■□□□□ 0.23
NEK3-201ENST00000550331 POTEHQ6S545 545 aa16.42■□□□□ 0.22
NEK3-201ENST00000550331 RNF216Q9NWF9 866 aaPredicted RBP16.37■□□□□ 0.21
NEK3-201ENST00000550331 PPP4R3CPQ6ZMV5 832 aa16.33■□□□□ 0.2
NEK3-201ENST00000550331 CNKSR2Q8WXI2 1034 aa16.28■□□□□ 0.2
NEK3-201ENST00000550331 NACADO15069 1562 aa16.26■□□□□ 0.19
NEK3-201ENST00000550331 PABPN1Q86U42 306 aaKnown RBP eCLIP16.16■□□□□ 0.188e-7■■□□□ 13.3
NEK3-201ENST00000550331 UNC13AQ9UPW8 1703 aa16.14■□□□□ 0.17
NEK3-201ENST00000550331 DCAF8L2P0C7V8 631 aa16.1■□□□□ 0.17
NEK3-201ENST00000550331 MYO15BQ96JP2 1530 aa16.07■□□□□ 0.16
NEK3-201ENST00000550331 BICRAQ9NZM4 1560 aa15.98■□□□□ 0.15
NEK3-201ENST00000550331 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.91■□□□□ 0.14
NEK3-201ENST00000550331 ZCCHC6Q5VYS8 1495 aaKnown RBP15.88■□□□□ 0.13
NEK3-201ENST00000550331 DCAF1Q9Y4B6 1507 aa15.85■□□□□ 0.13
NEK3-201ENST00000550331 CC2D2AQ9P2K1 1620 aa15.75■□□□□ 0.11
NEK3-201ENST00000550331 CECR2Q9BXF3 1484 aa15.74■□□□□ 0.11
NEK3-201ENST00000550331 SHROOM4Q9ULL8 1493 aa15.73■□□□□ 0.11
NEK3-201ENST00000550331 DSG3P32926 999 aa15.67■□□□□ 0.1
NEK3-201ENST00000550331 EIF4G1Q04637 1599 aaKnown RBP15.62■□□□□ 0.09
NEK3-201ENST00000550331 SCRIBQ14160 1630 aa15.61■□□□□ 0.09
NEK3-201ENST00000550331 CAPN15O75808 1086 aa15.54■□□□□ 0.08
NEK3-201ENST00000550331 DNAJC5Q9H3Z4 198 aa15.51■□□□□ 0.07
NEK3-201ENST00000550331 SPINK5Q9NQ38 1064 aaPredicted RBP15.49■□□□□ 0.07
NEK3-201ENST00000550331 NCBP3Q53F19 620 aaKnown RBP15.48■□□□□ 0.07
NEK3-201ENST00000550331 U3KPZ7 1027 aaPredicted RBP15.47■□□□□ 0.07
NEK3-201ENST00000550331 NPM3O75607 178 aaKnown RBP15.19■□□□□ 0.02
NEK3-201ENST00000550331 CUX2O14529 1486 aa15.16■□□□□ 0.02
NEK3-201ENST00000550331 ERCC6Q03468 1493 aa15.09■□□□□ 0.01
NEK3-201ENST00000550331 ZNF219Q9P2Y4 722 aaPredicted RBP15.07■□□□□ 0
NEK3-201ENST00000550331 ABCB7O75027 752 aa15.06■□□□□ 0
NEK3-201ENST00000550331 APLP2Q06481 763 aa15.06■□□□□ 0
NEK3-201ENST00000550331 RBM42Q9BTD8 480 aaKnown RBP15.05■□□□□ -0
NEK3-201ENST00000550331 TRHP20396 242 aaPredicted RBP15.04■□□□□ -0
NEK3-201ENST00000550331 CHRDL2Q6WN34 429 aa15.03■□□□□ -0
NEK3-201ENST00000550331 NCAPD3P42695 1498 aa15.01□□□□□ -0.01
NEK3-201ENST00000550331 SP7Q8TDD2 431 aaPredicted RBP14.97□□□□□ -0.01
NEK3-201ENST00000550331 ATAD2BQ9ULI0 1458 aa14.95□□□□□ -0.02
NEK3-201ENST00000550331 SMARCA4P51532 1647 aa14.92□□□□□ -0.02
NEK3-201ENST00000550331 SMARCA2P51531 1590 aa14.91□□□□□ -0.02
NEK3-201ENST00000550331 HMGXB3Q12766 1538 aa14.91□□□□□ -0.02
NEK3-201ENST00000550331 NESP48681 1621 aa14.88□□□□□ -0.03
NEK3-201ENST00000550331 BAZ1AQ9NRL2 1556 aaPredicted RBP14.87□□□□□ -0.03
NEK3-201ENST00000550331 THOC2Q8NI27 1593 aaKnown RBP14.81□□□□□ -0.04
NEK3-201ENST00000550331 PEG3Q9GZU2 1588 aa14.81□□□□□ -0.04
NEK3-201ENST00000550331 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.8□□□□□ -0.04
NEK3-201ENST00000550331 HNRNPUL2Q1KMD3 747 aaKnown RBP14.8□□□□□ -0.04
NEK3-201ENST00000550331 BAZ1BQ9UIG0 1483 aaKnown RBP14.8□□□□□ -0.04
NEK3-201ENST00000550331 SLC4A2P04920 1241 aa14.74□□□□□ -0.05
NEK3-201ENST00000550331 TRIM41Q8WV44 630 aa14.74□□□□□ -0.05
NEK3-201ENST00000550331 KIF21AQ7Z4S6 1674 aa14.74□□□□□ -0.05
NEK3-201ENST00000550331 MROH2BQ7Z745 1585 aa14.73□□□□□ -0.05
NEK3-201ENST00000550331 LAMC3Q9Y6N6 1575 aa14.73□□□□□ -0.05
NEK3-201ENST00000550331 SAMD1Q6SPF0 538 aaPredicted RBP14.64□□□□□ -0.07
NEK3-201ENST00000550331 PDS5BQ9NTI5 1447 aa14.64□□□□□ -0.07
NEK3-201ENST00000550331 MRC2Q9UBG0 1479 aa14.55□□□□□ -0.08
NEK3-201ENST00000550331 CADPSQ9ULU8 1353 aa14.54□□□□□ -0.08
NEK3-201ENST00000550331 WIZO95785 1651 aa14.52□□□□□ -0.09
NEK3-201ENST00000550331 WDR62O43379 1518 aa14.51□□□□□ -0.09
NEK3-201ENST00000550331 AKT1S1Q96B36 256 aa14.48□□□□□ -0.09
NEK3-201ENST00000550331 PIP4P2Q8N4L2 257 aa14.46□□□□□ -0.09
NEK3-201ENST00000550331 POLA2Q14181 598 aa14.44□□□□□ -0.1
NEK3-201ENST00000550331 RSF1Q96T23 1441 aaPredicted RBP14.43□□□□□ -0.1
NEK3-201ENST00000550331 HAX1O00165 279 aa14.43□□□□□ -0.1
NEK3-201ENST00000550331 CEP164Q9UPV0 1460 aa14.43□□□□□ -0.1
NEK3-201ENST00000550331 OSCARQ8IYS5 282 aa14.39□□□□□ -0.11
NEK3-201ENST00000550331 TOP2AP11388 1531 aaKnown RBP14.39□□□□□ -0.11
NEK3-201ENST00000550331 CFTRP13569 1480 aa14.38□□□□□ -0.11
NEK3-201ENST00000550331 FANCD2Q9BXW9 1451 aa14.37□□□□□ -0.11
NEK3-201ENST00000550331 REM2Q8IYK8 340 aaPredicted RBP14.3□□□□□ -0.12
NEK3-201ENST00000550331 RIMBP3CA6NJZ7 1639 aa14.3□□□□□ -0.12
NEK3-201ENST00000550331 RIMBP3BA6NNM3 1639 aa14.3□□□□□ -0.12
NEK3-201ENST00000550331 RIMBP3Q9UFD9 1639 aa14.3□□□□□ -0.12
NEK3-201ENST00000550331 URB2Q14146 1524 aaKnown RBP14.27□□□□□ -0.12
NEK3-201ENST00000550331 FXR2P51116 673 aaKnown RBP eCLIP14.24□□□□□ -0.13
NEK3-201ENST00000550331 CCDC88BA6NC98 1476 aa14.2□□□□□ -0.14
NEK3-201ENST00000550331 PRDM2Q13029 1718 aa14.2□□□□□ -0.14
NEK3-201ENST00000550331 ARHGEF11O15085 1522 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms