RNA–Protein interactions for RNA: ENST00000547950.1

SCAF11-211, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-211ENST00000547950 WRNQ14191 1432 aaPredicted RBP eCLIP11.79□□□□□ -0.52
SCAF11-211ENST00000547950 MAGI1Q96QZ7 1491 aaPredicted RBP11.77□□□□□ -0.52
SCAF11-211ENST00000547950 CHD1O14646 1710 aa11.76□□□□□ -0.53
SCAF11-211ENST00000547950 SYNJ2O15056 1496 aa11.76□□□□□ -0.53
SCAF11-211ENST00000547950 ABCA10Q8WWZ4 1543 aa11.76□□□□□ -0.53
SCAF11-211ENST00000547950 TRHP20396 242 aaPredicted RBP11.75□□□□□ -0.53
SCAF11-211ENST00000547950 WDR97A6NE52 1622 aa11.75□□□□□ -0.53
SCAF11-211ENST00000547950 ARAP1Q96P48 1450 aa11.72□□□□□ -0.53
SCAF11-211ENST00000547950 SYNJ1O43426 1573 aa11.7□□□□□ -0.54
SCAF11-211ENST00000547950 TOP2BQ02880 1626 aa11.68□□□□□ -0.54
SCAF11-211ENST00000547950 CLASP1Q7Z460 1538 aa11.68□□□□□ -0.54
SCAF11-211ENST00000547950 U3KPZ7 1027 aaPredicted RBP11.67□□□□□ -0.54
SCAF11-211ENST00000547950 ABCA5Q8WWZ7 1642 aa11.67□□□□□ -0.54
SCAF11-211ENST00000547950 GRIN2AQ12879 1464 aa11.65□□□□□ -0.54
SCAF11-211ENST00000547950 FHAD1B1AJZ9 1412 aa11.65□□□□□ -0.54
SCAF11-211ENST00000547950 BIVM-ERCC5R4GMW8 1640 aa11.64□□□□□ -0.55
SCAF11-211ENST00000547950 PBRM1Q86U86 1689 aa11.64□□□□□ -0.55
SCAF11-211ENST00000547950 NUP160Q12769 1436 aa11.6□□□□□ -0.55
SCAF11-211ENST00000547950 JPH4Q96JJ6 628 aa11.6□□□□□ -0.55
SCAF11-211ENST00000547950 ADAMTS12P58397 1594 aa11.59□□□□□ -0.55
SCAF11-211ENST00000547950 ERICH3Q5RHP9 1530 aa11.59□□□□□ -0.55
SCAF11-211ENST00000547950 IGF1RP08069 1367 aa11.58□□□□□ -0.56
SCAF11-211ENST00000547950 SLC4A2P04920 1241 aa11.57□□□□□ -0.56
SCAF11-211ENST00000547950 CEP170Q5SW79 1584 aa11.57□□□□□ -0.56
SCAF11-211ENST00000547950 KIF27Q86VH2 1401 aa11.56□□□□□ -0.56
SCAF11-211ENST00000547950 ERCC6L2Q5T890 1561 aa11.55□□□□□ -0.56
SCAF11-211ENST00000547950 PRG4Q92954 1404 aaPredicted RBP11.55□□□□□ -0.56
SCAF11-211ENST00000547950 CAPN15O75808 1086 aa11.53□□□□□ -0.56
SCAF11-211ENST00000547950 SPINK5Q9NQ38 1064 aaPredicted RBP11.52□□□□□ -0.57
SCAF11-211ENST00000547950 CARMIL1Q5VZK9 1371 aa11.5□□□□□ -0.57
SCAF11-211ENST00000547950 NPM1P06748 294 aaKnown RBP eCLIP11.49□□□□□ -0.57
SCAF11-211ENST00000547950 TTBK1Q5TCY1 1321 aaPredicted RBP11.49□□□□□ -0.57
SCAF11-211ENST00000547950 SHROOM2Q13796 1616 aa11.46□□□□□ -0.58
SCAF11-211ENST00000547950 KIAA0586Q9BVV6 1533 aa11.45□□□□□ -0.58
SCAF11-211ENST00000547950 FAM69CQ0P6D2 419 aa11.41□□□□□ -0.58
SCAF11-211ENST00000547950 RUSC2Q8N2Y8 1516 aa11.4□□□□□ -0.58
SCAF11-211ENST00000547950 PTPRGP23470 1445 aa11.4□□□□□ -0.58
SCAF11-211ENST00000547950 CUL7Q14999 1698 aa11.39□□□□□ -0.59
SCAF11-211ENST00000547950 DSG3P32926 999 aa11.38□□□□□ -0.59
SCAF11-211ENST00000547950 CARMIL2Q6F5E8 1435 aa11.37□□□□□ -0.59
SCAF11-211ENST00000547950 TNIKQ9UKE5 1360 aa11.36□□□□□ -0.59
SCAF11-211ENST00000547950 RAPGEF2Q9Y4G8 1499 aa11.36□□□□□ -0.59
SCAF11-211ENST00000547950 APLP2Q06481 763 aa11.35□□□□□ -0.59
SCAF11-211ENST00000547950 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.34□□□□□ -0.59
SCAF11-211ENST00000547950 HNRNPUL2Q1KMD3 747 aaKnown RBP11.34□□□□□ -0.59
SCAF11-211ENST00000547950 ABCC10Q5T3U5 1492 aa11.32□□□□□ -0.6
SCAF11-211ENST00000547950 SLC4A1APQ9BWU0 796 aaKnown RBP11.31□□□□□ -0.6
SCAF11-211ENST00000547950 IQGAP2Q13576 1575 aa11.3□□□□□ -0.6
SCAF11-211ENST00000547950 ADCY10Q96PN6 1610 aa11.3□□□□□ -0.6
SCAF11-211ENST00000547950 CSRNP3Q8WYN3 585 aa11.29□□□□□ -0.6
SCAF11-211ENST00000547950 ABCB7O75027 752 aa11.28□□□□□ -0.6
SCAF11-211ENST00000547950 SAMD1Q6SPF0 538 aaPredicted RBP11.28□□□□□ -0.6
SCAF11-211ENST00000547950 DISP1Q96F81 1524 aa11.28□□□□□ -0.6
SCAF11-211ENST00000547950 UACAQ9BZF9 1416 aa11.27□□□□□ -0.6
SCAF11-211ENST00000547950 MAPKBP1O60336 1514 aa11.27□□□□□ -0.61
SCAF11-211ENST00000547950 FAM9AQ8IZU1 332 aaPredicted RBP11.27□□□□□ -0.61
SCAF11-211ENST00000547950 ZNF219Q9P2Y4 722 aaPredicted RBP11.27□□□□□ -0.61
SCAF11-211ENST00000547950 P3H3Q8IVL6 736 aa11.26□□□□□ -0.61
SCAF11-211ENST00000547950 ABCC2Q92887 1545 aa11.25□□□□□ -0.61
SCAF11-211ENST00000547950 ASXL2Q76L83 1435 aa11.25□□□□□ -0.61
SCAF11-211ENST00000547950 PRXQ9BXM0 1461 aa11.25□□□□□ -0.61
SCAF11-211ENST00000547950 UGGT2Q9NYU1 1516 aa11.25□□□□□ -0.61
SCAF11-211ENST00000547950 RANGAP1P46060 587 aaPredicted RBP11.23□□□□□ -0.61
SCAF11-211ENST00000547950 UHRF1BP1LA0JNW5 1464 aa11.23□□□□□ -0.61
SCAF11-211ENST00000547950 MYCNP04198 464 aaPredicted RBP11.22□□□□□ -0.61
SCAF11-211ENST00000547950 PLB1Q6P1J6 1458 aa11.22□□□□□ -0.61
SCAF11-211ENST00000547950 DIP2BQ9P265 1576 aa11.22□□□□□ -0.61
SCAF11-211ENST00000547950 ARID3CA6NKF2 412 aa11.21□□□□□ -0.61
SCAF11-211ENST00000547950 KCNH8Q96L42 1107 aa11.21□□□□□ -0.61
SCAF11-211ENST00000547950 KIF13AQ9H1H9 1805 aa11.21□□□□□ -0.62
SCAF11-211ENST00000547950 GOLGA3Q08378 1498 aa11.19□□□□□ -0.62
SCAF11-211ENST00000547950 KIAA0556O60303 1618 aa11.18□□□□□ -0.62
SCAF11-211ENST00000547950 EHMT2Q96KQ7 1210 aa11.18□□□□□ -0.62
SCAF11-211ENST00000547950 KDM5BQ9UGL1 1544 aa11.18□□□□□ -0.62
SCAF11-211ENST00000547950 EPRSP07814 1512 aaKnown RBP11.15□□□□□ -0.62
SCAF11-211ENST00000547950 EEA1Q15075 1411 aa11.13□□□□□ -0.63
SCAF11-211ENST00000547950 FOXD4L1Q9NU39 408 aa11.13□□□□□ -0.63
SCAF11-211ENST00000547950 GLI2P10070 1586 aa11.12□□□□□ -0.63
SCAF11-211ENST00000547950 KDM4FA0A1W2PPD8 638 aa11.12□□□□□ -0.63
SCAF11-211ENST00000547950 KDM6BO15054 1643 aa11.12□□□□□ -0.63
SCAF11-211ENST00000547950 WDR7Q9Y4E6 1490 aa11.12□□□□□ -0.63
SCAF11-211ENST00000547950 TSPOAP1O95153 1857 aa11.11□□□□□ -0.63
SCAF11-211ENST00000547950 UBTFP17480 764 aaKnown RBP11.11□□□□□ -0.63
SCAF11-211ENST00000547950 ZCCHC11Q5TAX3 1644 aaKnown RBP11.1□□□□□ -0.63
SCAF11-211ENST00000547950 ABCA8O94911 1581 aa11.1□□□□□ -0.63
SCAF11-211ENST00000547950 CTTNBP2Q8WZ74 1663 aa11.1□□□□□ -0.63
SCAF11-211ENST00000547950 CD109Q6YHK3 1445 aa11.09□□□□□ -0.63
SCAF11-211ENST00000547950 COL17A1Q9UMD9 1497 aaPredicted RBP11.09□□□□□ -0.63
SCAF11-211ENST00000547950 ATP10BO94823 1461 aa11.08□□□□□ -0.64
SCAF11-211ENST00000547950 TEX14Q8IWB6 1497 aa11.07□□□□□ -0.64
SCAF11-211ENST00000547950 FHOD3Q2V2M9 1422 aa11.06□□□□□ -0.64
SCAF11-211ENST00000547950 ATP1B4Q9UN42 357 aaPredicted RBP11.05□□□□□ -0.64
SCAF11-211ENST00000547950 PLEKHD1A6NEE1 506 aa11.04□□□□□ -0.64
SCAF11-211ENST00000547950 POLA2Q14181 598 aa11.04□□□□□ -0.64
SCAF11-211ENST00000547950 MAP3K4Q9Y6R4 1608 aa11.02□□□□□ -0.64
SCAF11-211ENST00000547950 PPRC1Q5VV67 1664 aaKnown RBP11.02□□□□□ -0.64
SCAF11-211ENST00000547950 MAGI3Q5TCQ9 1506 aa11.02□□□□□ -0.65
SCAF11-211ENST00000547950 SAMD9Q5K651 1589 aa11.01□□□□□ -0.65
SCAF11-211ENST00000547950 NUP153P49790 1475 aaKnown RBP11□□□□□ -0.65
SCAF11-211ENST00000547950 RAPGEF3O95398 923 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms