RNA–Protein interactions for RNA: ENST00000547856.5

RAPGEF3-216, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 2

Gene RAPGEF3, Length 2,659 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-216ENST00000547856 PRDM2Q13029 1718 aa20.19■□□□□ 0.82
RAPGEF3-216ENST00000547856 PRXQ9BXM0 1461 aa20.19■□□□□ 0.82
RAPGEF3-216ENST00000547856 VPS8Q8N3P4 1428 aa20.18■□□□□ 0.82
RAPGEF3-216ENST00000547856 CCDC136Q96JN2 1154 aa20.17■□□□□ 0.82
RAPGEF3-216ENST00000547856 CC2D2AQ9P2K1 1620 aa20.16■□□□□ 0.82
RAPGEF3-216ENST00000547856 ERICH3Q5RHP9 1530 aa20.16■□□□□ 0.82
RAPGEF3-216ENST00000547856 KIF27Q86VH2 1401 aa20.12■□□□□ 0.81
RAPGEF3-216ENST00000547856 MYT1LQ9UL68 1186 aa20.12■□□□□ 0.81
RAPGEF3-216ENST00000547856 CADPSQ9ULU8 1353 aa20.12■□□□□ 0.81
RAPGEF3-216ENST00000547856 HIRIP3Q9BW71 556 aaPredicted RBP20.09■□□□□ 0.81
RAPGEF3-216ENST00000547856 RTN4Q9NQC3 1192 aaKnown RBP20.04■□□□□ 0.8
RAPGEF3-216ENST00000547856 ARAP1Q96P48 1450 aa20.02■□□□□ 0.8
RAPGEF3-216ENST00000547856 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.99■□□□□ 0.79
RAPGEF3-216ENST00000547856 CUX2O14529 1486 aa19.99■□□□□ 0.79
RAPGEF3-216ENST00000547856 ANP32CO43423 234 aa19.98■□□□□ 0.79
RAPGEF3-216ENST00000547856 PAK3O75914 559 aaPredicted RBP19.97■□□□□ 0.79
RAPGEF3-216ENST00000547856 FGD5Q6ZNL6 1462 aa19.97■□□□□ 0.79
RAPGEF3-216ENST00000547856 IL27Q8NEV9 243 aa19.97■□□□□ 0.79
RAPGEF3-216ENST00000547856 IGF1RP08069 1367 aa19.95■□□□□ 0.78
RAPGEF3-216ENST00000547856 NOP58Q9Y2X3 529 aaKnown RBP19.95■□□□□ 0.78
RAPGEF3-216ENST00000547856 PPP1R15AO75807 674 aaPredicted RBP19.94■□□□□ 0.78
RAPGEF3-216ENST00000547856 FANCD2Q9BXW9 1451 aa19.92■□□□□ 0.78
RAPGEF3-216ENST00000547856 KANK4Q5T7N3 995 aaPredicted RBP19.91■□□□□ 0.78
RAPGEF3-216ENST00000547856 HNRNPUQ00839 825 aaKnown RBP eCLIP19.91■□□□□ 0.78
RAPGEF3-216ENST00000547856 CCER2I3L3R5 266 aa19.9■□□□□ 0.78
RAPGEF3-216ENST00000547856 ARHGAP35Q9NRY4 1499 aa19.89■□□□□ 0.77
RAPGEF3-216ENST00000547856 NESP48681 1621 aa19.88■□□□□ 0.77
RAPGEF3-216ENST00000547856 ERICH6BQ5W0A0 696 aa19.88■□□□□ 0.77
RAPGEF3-216ENST00000547856 SIN3AQ96ST3 1273 aa19.88■□□□□ 0.77
RAPGEF3-216ENST00000547856 B4GALNT3Q6L9W6 998 aa19.87■□□□□ 0.77
RAPGEF3-216ENST00000547856 CARMIL1Q5VZK9 1371 aa19.84■□□□□ 0.77
RAPGEF3-216ENST00000547856 RTL5Q5HYW3 569 aaPredicted RBP19.84■□□□□ 0.77
RAPGEF3-216ENST00000547856 PPP4R2Q9NY27 417 aa19.81■□□□□ 0.76
RAPGEF3-216ENST00000547856 DNMBPQ6XZF7 1577 aa19.81■□□□□ 0.76
RAPGEF3-216ENST00000547856 RAD54L2Q9Y4B4 1467 aa19.8■□□□□ 0.76
RAPGEF3-216ENST00000547856 WDR97A6NE52 1622 aa19.79■□□□□ 0.76
RAPGEF3-216ENST00000547856 TOPBP1Q92547 1522 aa19.79■□□□□ 0.76
RAPGEF3-216ENST00000547856 POLA1P09884 1462 aaPredicted RBP19.77■□□□□ 0.76
RAPGEF3-216ENST00000547856 UBE2Q2Q8WVN8 375 aa19.74■□□□□ 0.75
RAPGEF3-216ENST00000547856 RAB3GAP2Q9H2M9 1393 aa19.74■□□□□ 0.75
RAPGEF3-216ENST00000547856 ABCA10Q8WWZ4 1543 aa19.73■□□□□ 0.75
RAPGEF3-216ENST00000547856 DNAJC5BQ9UF47 199 aa19.73■□□□□ 0.75
RAPGEF3-216ENST00000547856 MAPKBP1O60336 1514 aa19.71■□□□□ 0.75
RAPGEF3-216ENST00000547856 LAMC3Q9Y6N6 1575 aa19.7■□□□□ 0.74
RAPGEF3-216ENST00000547856 RRBP1Q9P2E9 1410 aaKnown RBP19.69■□□□□ 0.74
RAPGEF3-216ENST00000547856 URB2Q14146 1524 aaKnown RBP19.68■□□□□ 0.74
RAPGEF3-216ENST00000547856 ZBTB47Q9UFB7 747 aaPredicted RBP19.68■□□□□ 0.74
RAPGEF3-216ENST00000547856 CCNB3Q8WWL7 1395 aa19.67■□□□□ 0.74
RAPGEF3-216ENST00000547856 EIF5BO60841 1220 aaKnown RBP19.66■□□□□ 0.74
RAPGEF3-216ENST00000547856 ANP32AP39687 249 aaKnown RBP19.66■□□□□ 0.74
RAPGEF3-216ENST00000547856 IPO9Q96P70 1041 aaKnown RBP19.65■□□□□ 0.74
RAPGEF3-216ENST00000547856 TIAM1Q13009 1591 aa19.63■□□□□ 0.73
RAPGEF3-216ENST00000547856 P3H3Q8IVL6 736 aa19.62■□□□□ 0.73
RAPGEF3-216ENST00000547856 CUL7Q14999 1698 aa19.6■□□□□ 0.73
RAPGEF3-216ENST00000547856 MAP3K1Q13233 1512 aa19.59■□□□□ 0.73
RAPGEF3-216ENST00000547856 LAS1LQ9Y4W2 734 aaKnown RBP19.57■□□□□ 0.72
RAPGEF3-216ENST00000547856 KIF21AQ7Z4S6 1674 aa19.56■□□□□ 0.72
RAPGEF3-216ENST00000547856 NPM2Q86SE8 214 aaKnown RBP19.56■□□□□ 0.72
RAPGEF3-216ENST00000547856 PCF11O94913 1555 aaKnown RBP19.55■□□□□ 0.72
RAPGEF3-216ENST00000547856 PDS5BQ9NTI5 1447 aa19.55■□□□□ 0.72
RAPGEF3-216ENST00000547856 TDRD9Q8NDG6 1382 aaKnown RBP19.55■□□□□ 0.72
RAPGEF3-216ENST00000547856 FAM9BQ8IZU0 186 aa19.55■□□□□ 0.72
RAPGEF3-216ENST00000547856 LRRC9Q6ZRR7 1453 aa19.55■□□□□ 0.72
RAPGEF3-216ENST00000547856 CCDC184Q52MB2 194 aa19.55■□□□□ 0.72
RAPGEF3-216ENST00000547856 FHAD1B1AJZ9 1412 aa19.54■□□□□ 0.72
RAPGEF3-216ENST00000547856 FHOD3Q2V2M9 1422 aa19.54■□□□□ 0.72
RAPGEF3-216ENST00000547856 CTTNBP2Q8WZ74 1663 aa19.54■□□□□ 0.72
RAPGEF3-216ENST00000547856 ABCA5Q8WWZ7 1642 aa19.53■□□□□ 0.72
RAPGEF3-216ENST00000547856 NEFMP07197 916 aa19.53■□□□□ 0.72
RAPGEF3-216ENST00000547856 SETD5Q9C0A6 1442 aa19.51■□□□□ 0.71
RAPGEF3-216ENST00000547856 CFAP43Q8NDM7 1665 aa19.51■□□□□ 0.71
RAPGEF3-216ENST00000547856 FAM50AQ14320 339 aaKnown RBP19.5■□□□□ 0.71
RAPGEF3-216ENST00000547856 BRPF3Q9ULD4 1205 aa19.5■□□□□ 0.71
RAPGEF3-216ENST00000547856 EFCAB5A4FU69 1503 aa19.49■□□□□ 0.71
RAPGEF3-216ENST00000547856 GAPVD1Q14C86 1478 aa19.49■□□□□ 0.71
RAPGEF3-216ENST00000547856 PHLDB1Q86UU1 1377 aa19.49■□□□□ 0.71
RAPGEF3-216ENST00000547856 ATP1B4Q9UN42 357 aaPredicted RBP19.48■□□□□ 0.71
RAPGEF3-216ENST00000547856 WASHC2AQ641Q2 1341 aa19.47■□□□□ 0.71
RAPGEF3-216ENST00000547856 FYCO1Q9BQS8 1478 aa19.44■□□□□ 0.7
RAPGEF3-216ENST00000547856 CASKIN1Q8WXD9 1431 aa19.43■□□□□ 0.7
RAPGEF3-216ENST00000547856 TARBP1Q13395 1621 aaKnown RBP19.43■□□□□ 0.7
RAPGEF3-216ENST00000547856 TIMELESSQ9UNS1 1208 aa19.42■□□□□ 0.7
RAPGEF3-216ENST00000547856 SENP3-EIF4A1A0A087X0R7 540 aa19.42■□□□□ 0.7
RAPGEF3-216ENST00000547856 TONSLQ96HA7 1378 aa19.41■□□□□ 0.7
RAPGEF3-216ENST00000547856 AQRO60306 1485 aaKnown RBP eCLIP19.41■□□□□ 0.7
RAPGEF3-216ENST00000547856 MRS2Q9HD23 443 aa19.38■□□□□ 0.69
RAPGEF3-216ENST00000547856 SAMD9Q5K651 1589 aa19.37■□□□□ 0.69
RAPGEF3-216ENST00000547856 SNAPC4Q5SXM2 1469 aa19.37■□□□□ 0.69
RAPGEF3-216ENST00000547856 FMN1Q68DA7 1419 aa19.37■□□□□ 0.69
RAPGEF3-216ENST00000547856 CNGB1Q14028 1251 aaPredicted RBP19.36■□□□□ 0.69
RAPGEF3-216ENST00000547856 AKNAQ7Z591 1439 aa19.34■□□□□ 0.69
RAPGEF3-216ENST00000547856 C11orf95C9JLR9 678 aaPredicted RBP19.34■□□□□ 0.69
RAPGEF3-216ENST00000547856 WASHC2CQ9Y4E1 1318 aa19.34■□□□□ 0.69
RAPGEF3-216ENST00000547856 LRRIQ1Q96JM4 1722 aa19.33■□□□□ 0.69
RAPGEF3-216ENST00000547856 ZBED9Q6R2W3 1325 aa19.32■□□□□ 0.68
RAPGEF3-216ENST00000547856 PBRM1Q86U86 1689 aa19.31■□□□□ 0.68
RAPGEF3-216ENST00000547856 PKNOX2Q96KN3 472 aa19.31■□□□□ 0.68
RAPGEF3-216ENST00000547856 USP35Q9P2H5 1018 aa19.3■□□□□ 0.68
RAPGEF3-216ENST00000547856 HSPA5P11021 654 aaKnown RBP19.28■□□□□ 0.68
RAPGEF3-216ENST00000547856 MRC2Q9UBG0 1479 aa19.28■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms