RNA–Protein interactions for RNA: ENST00000547856.5

RAPGEF3-216, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 2

Gene RAPGEF3, Length 2,659 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-216ENST00000547856 NISCHQ9Y2I1 1504 aa28.06■■■□□ 2.08
RAPGEF3-216ENST00000547856 HRCP23327 699 aa24.36■■□□□ 1.49
RAPGEF3-216ENST00000547856 PPARGC1BQ86YN6 1023 aaKnown RBP24.08■■□□□ 1.45
RAPGEF3-216ENST00000547856 CCDC180Q9P1Z9 1646 aa23.99■■□□□ 1.43
RAPGEF3-216ENST00000547856 PCGF6Q9BYE7 350 aa23.88■■□□□ 1.41
RAPGEF3-216ENST00000547856 PELP1Q8IZL8 1130 aaKnown RBP23.86■■□□□ 1.41
RAPGEF3-216ENST00000547856 SHROOM4Q9ULL8 1493 aa23.69■■□□□ 1.38
RAPGEF3-216ENST00000547856 ZCCHC6Q5VYS8 1495 aaKnown RBP23.69■■□□□ 1.38
RAPGEF3-216ENST00000547856 SUPT5HO00267 1087 aaKnown RBP23.63■■□□□ 1.37
RAPGEF3-216ENST00000547856 MYO15BQ96JP2 1530 aa23.4■■□□□ 1.34
RAPGEF3-216ENST00000547856 SCAF1Q9H7N4 1312 aaKnown RBP23.33■■□□□ 1.33
RAPGEF3-216ENST00000547856 DCAF8L2P0C7V8 631 aa23.24■■□□□ 1.31
RAPGEF3-216ENST00000547856 CHIC1Q5VXU3 224 aa23.17■■□□□ 1.3
RAPGEF3-216ENST00000547856 DCAF1Q9Y4B6 1507 aa23.03■■□□□ 1.28
RAPGEF3-216ENST00000547856 MYT1Q01538 1121 aa22.95■■□□□ 1.27
RAPGEF3-216ENST00000547856 LOC105371045A0A1W2PR82 267 aa22.86■■□□□ 1.25
RAPGEF3-216ENST00000547856 TRIM26Q12899 539 aaPredicted RBP22.84■■□□□ 1.25
RAPGEF3-216ENST00000547856 ZEB1P37275 1124 aaPredicted RBP22.67■■□□□ 1.22
RAPGEF3-216ENST00000547856 ACIN1Q9UKV3 1341 aaKnown RBP22.59■■□□□ 1.21
RAPGEF3-216ENST00000547856 NEUROD1Q13562 356 aa22.59■■□□□ 1.21
RAPGEF3-216ENST00000547856 GTF3C3Q9Y5Q9 886 aa22.53■■□□□ 1.2
RAPGEF3-216ENST00000547856 SCRIBQ14160 1630 aa22.4■■□□□ 1.18
RAPGEF3-216ENST00000547856 ABCC9O60706 1549 aa22.35■■□□□ 1.17
RAPGEF3-216ENST00000547856 CENPBP07199 599 aaPredicted RBP22.24■■□□□ 1.15
RAPGEF3-216ENST00000547856 NACADO15069 1562 aa22.2■■□□□ 1.14
RAPGEF3-216ENST00000547856 RSF1Q96T23 1441 aaPredicted RBP22.11■■□□□ 1.13
RAPGEF3-216ENST00000547856 DIEXFQ68CQ4 756 aaKnown RBP22.07■■□□□ 1.12
RAPGEF3-216ENST00000547856 EHMT2Q96KQ7 1210 aa22.03■■□□□ 1.12
RAPGEF3-216ENST00000547856 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.02■■□□□ 1.12
RAPGEF3-216ENST00000547856 YTHDC1Q96MU7 727 aaKnown RBP21.96■■□□□ 1.11
RAPGEF3-216ENST00000547856 CCER1Q8TC90 406 aaPredicted RBP21.95■■□□□ 1.1
RAPGEF3-216ENST00000547856 FAM9AQ8IZU1 332 aaPredicted RBP21.93■■□□□ 1.1
RAPGEF3-216ENST00000547856 CECR2Q9BXF3 1484 aa21.9■■□□□ 1.1
RAPGEF3-216ENST00000547856 RB1CC1Q8TDY2 1594 aa21.88■■□□□ 1.09
RAPGEF3-216ENST00000547856 MROH2BQ7Z745 1585 aa21.8■■□□□ 1.08
RAPGEF3-216ENST00000547856 BCL11AQ9H165 835 aa21.72■■□□□ 1.07
RAPGEF3-216ENST00000547856 WIZO95785 1651 aa21.69■■□□□ 1.06
RAPGEF3-216ENST00000547856 TRIM41Q8WV44 630 aa21.68■■□□□ 1.06
RAPGEF3-216ENST00000547856 UNC13AQ9UPW8 1703 aa21.63■■□□□ 1.05
RAPGEF3-216ENST00000547856 BAZ1AQ9NRL2 1556 aaPredicted RBP21.55■■□□□ 1.04
RAPGEF3-216ENST00000547856 TTBK1Q5TCY1 1321 aaPredicted RBP21.54■■□□□ 1.04
RAPGEF3-216ENST00000547856 MIER1Q8N108 512 aa21.52■■□□□ 1.03
RAPGEF3-216ENST00000547856 ZNF316A6NFI3 1004 aaPredicted RBP21.51■■□□□ 1.03
RAPGEF3-216ENST00000547856 ANP32EQ9BTT0 268 aa21.46■■□□□ 1.03
RAPGEF3-216ENST00000547856 SMARCA4P51532 1647 aa21.43■■□□□ 1.02
RAPGEF3-216ENST00000547856 BICRAQ9NZM4 1560 aa21.34■■□□□ 1.01
RAPGEF3-216ENST00000547856 CSRNP3Q8WYN3 585 aa21.34■■□□□ 1.01
RAPGEF3-216ENST00000547856 TOP2AP11388 1531 aaKnown RBP21.32■■□□□ 1
RAPGEF3-216ENST00000547856 PABPN1Q86U42 306 aaKnown RBP eCLIP21.32■■□□□ 1
RAPGEF3-216ENST00000547856 EIF4G1Q04637 1599 aaKnown RBP21.31■■□□□ 1
RAPGEF3-216ENST00000547856 TSHZ2Q9NRE2 1034 aa21.29■■□□□ 1
RAPGEF3-216ENST00000547856 SUPT16HQ9Y5B9 1047 aaKnown RBP21.29■■□□□ 1
RAPGEF3-216ENST00000547856 CCDC88BA6NC98 1476 aa21.23■□□□□ 0.99
RAPGEF3-216ENST00000547856 SMARCA2P51531 1590 aa21.22■□□□□ 0.99
RAPGEF3-216ENST00000547856 ABCC8Q09428 1581 aa21.11■□□□□ 0.97
RAPGEF3-216ENST00000547856 PEG3Q9GZU2 1588 aa21.04■□□□□ 0.96
RAPGEF3-216ENST00000547856 PRKCSHP14314 528 aaPredicted RBP21.03■□□□□ 0.96
RAPGEF3-216ENST00000547856 BCANQ96GW7 911 aa21■□□□□ 0.95
RAPGEF3-216ENST00000547856 CLSPNQ9HAW4 1339 aa20.95■□□□□ 0.94
RAPGEF3-216ENST00000547856 HNRNPUL2Q1KMD3 747 aaKnown RBP20.92■□□□□ 0.94
RAPGEF3-216ENST00000547856 ATAD2BQ9ULI0 1458 aa20.91■□□□□ 0.94
RAPGEF3-216ENST00000547856 SOGA1O94964 1423 aa20.85■□□□□ 0.93
RAPGEF3-216ENST00000547856 BAZ1BQ9UIG0 1483 aaKnown RBP20.82■□□□□ 0.92
RAPGEF3-216ENST00000547856 RUSC2Q8N2Y8 1516 aa20.78■□□□□ 0.92
RAPGEF3-216ENST00000547856 RBM19Q9Y4C8 960 aaKnown RBP20.77■□□□□ 0.92
RAPGEF3-216ENST00000547856 WRNQ14191 1432 aaPredicted RBP eCLIP20.75■□□□□ 0.91
RAPGEF3-216ENST00000547856 FKBP8Q14318 412 aa20.73■□□□□ 0.91
RAPGEF3-216ENST00000547856 SYNJ1O43426 1573 aa20.7■□□□□ 0.9
RAPGEF3-216ENST00000547856 CEP162Q5TB80 1403 aa20.7■□□□□ 0.9
RAPGEF3-216ENST00000547856 KCNH8Q96L42 1107 aa20.69■□□□□ 0.9
RAPGEF3-216ENST00000547856 EEA1Q15075 1411 aa20.68■□□□□ 0.9
RAPGEF3-216ENST00000547856 ITGAEP38570 1179 aa20.65■□□□□ 0.9
RAPGEF3-216ENST00000547856 MSH5O43196 834 aa20.64■□□□□ 0.89
RAPGEF3-216ENST00000547856 TNIKQ9UKE5 1360 aa20.62■□□□□ 0.89
RAPGEF3-216ENST00000547856 UBTFP17480 764 aaKnown RBP20.6■□□□□ 0.89
RAPGEF3-216ENST00000547856 NCAPD3P42695 1498 aa20.55■□□□□ 0.88
RAPGEF3-216ENST00000547856 GOLGA3Q08378 1498 aa20.53■□□□□ 0.88
RAPGEF3-216ENST00000547856 HMGXB3Q12766 1538 aa20.53■□□□□ 0.88
RAPGEF3-216ENST00000547856 ERICH6Q7L0X2 663 aa20.51■□□□□ 0.87
RAPGEF3-216ENST00000547856 NEFLP07196 543 aa20.47■□□□□ 0.87
RAPGEF3-216ENST00000547856 TOP2BQ02880 1626 aa20.46■□□□□ 0.87
RAPGEF3-216ENST00000547856 KIF21BO75037 1637 aa20.45■□□□□ 0.86
RAPGEF3-216ENST00000547856 CEP164Q9UPV0 1460 aa20.44■□□□□ 0.86
RAPGEF3-216ENST00000547856 ANO8Q9HCE9 1232 aaPredicted RBP20.42■□□□□ 0.86
RAPGEF3-216ENST00000547856 BIVM-ERCC5R4GMW8 1640 aa20.4■□□□□ 0.86
RAPGEF3-216ENST00000547856 DEKP35659 375 aaKnown RBP20.38■□□□□ 0.85
RAPGEF3-216ENST00000547856 RAPGEF2Q9Y4G8 1499 aa20.35■□□□□ 0.85
RAPGEF3-216ENST00000547856 TRIM52Q96A61 297 aa20.34■□□□□ 0.85
RAPGEF3-216ENST00000547856 CFTRP13569 1480 aa20.32■□□□□ 0.84
RAPGEF3-216ENST00000547856 CUX1P39880 1505 aa20.31■□□□□ 0.84
RAPGEF3-216ENST00000547856 RANGAP1P46060 587 aaPredicted RBP20.31■□□□□ 0.84
RAPGEF3-216ENST00000547856 APLP2Q06481 763 aa20.3■□□□□ 0.84
RAPGEF3-216ENST00000547856 CLIP1P30622 1438 aa20.29■□□□□ 0.84
RAPGEF3-216ENST00000547856 DHX57Q6P158 1386 aaKnown RBP20.29■□□□□ 0.84
RAPGEF3-216ENST00000547856 FANCIQ9NVI1 1328 aa20.26■□□□□ 0.83
RAPGEF3-216ENST00000547856 DDX10Q13206 875 aaKnown RBP20.25■□□□□ 0.83
RAPGEF3-216ENST00000547856 IRX6P78412 446 aaPredicted RBP20.23■□□□□ 0.83
RAPGEF3-216ENST00000547856 CDK11AQ9UQ88 783 aaPredicted RBP20.21■□□□□ 0.83
RAPGEF3-216ENST00000547856 NBR1Q14596 966 aa20.19■□□□□ 0.82
RAPGEF3-216ENST00000547856 SALL2Q9Y467 1007 aaPredicted RBP20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms