RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 RAD54L2Q9Y4B4 1467 aa22.87■■□□□ 1.25
LDLR-204ENST00000545707 SIN3AQ96ST3 1273 aa22.86■■□□□ 1.25
LDLR-204ENST00000545707 MAPKBP1O60336 1514 aa22.86■■□□□ 1.25
LDLR-204ENST00000545707 FANCD2Q9BXW9 1451 aa22.85■■□□□ 1.25
LDLR-204ENST00000545707 SETD5Q9C0A6 1442 aa22.84■■□□□ 1.25
LDLR-204ENST00000545707 FHOD3Q2V2M9 1422 aa22.83■■□□□ 1.24
LDLR-204ENST00000545707 MAP3K1Q13233 1512 aa22.82■■□□□ 1.24
LDLR-204ENST00000545707 KCNH8Q96L42 1107 aa22.81■■□□□ 1.24
LDLR-204ENST00000545707 CC2D2AQ9P2K1 1620 aa22.81■■□□□ 1.24
LDLR-204ENST00000545707 FHAD1B1AJZ9 1412 aa22.79■■□□□ 1.24
LDLR-204ENST00000545707 PCF11O94913 1555 aaKnown RBP22.78■■□□□ 1.24
LDLR-204ENST00000545707 NESP48681 1621 aa22.76■■□□□ 1.23
LDLR-204ENST00000545707 POLA1P09884 1462 aaPredicted RBP22.72■■□□□ 1.23
LDLR-204ENST00000545707 HIRIP3Q9BW71 556 aaPredicted RBP22.71■■□□□ 1.23
LDLR-204ENST00000545707 SUPT16HQ9Y5B9 1047 aaKnown RBP22.7■■□□□ 1.22
LDLR-204ENST00000545707 DDX10Q13206 875 aaKnown RBP22.7■■□□□ 1.22
LDLR-204ENST00000545707 TOPBP1Q92547 1522 aa22.7■■□□□ 1.22
LDLR-204ENST00000545707 WDR97A6NE52 1622 aa22.69■■□□□ 1.22
LDLR-204ENST00000545707 ABCA10Q8WWZ4 1543 aa22.68■■□□□ 1.22
LDLR-204ENST00000545707 DNMBPQ6XZF7 1577 aa22.67■■□□□ 1.22
LDLR-204ENST00000545707 CFAP43Q8NDM7 1665 aa22.66■■□□□ 1.22
LDLR-204ENST00000545707 CASKIN1Q8WXD9 1431 aa22.63■■□□□ 1.21
LDLR-204ENST00000545707 FYCO1Q9BQS8 1478 aa22.62■■□□□ 1.21
LDLR-204ENST00000545707 TDRD9Q8NDG6 1382 aaKnown RBP22.61■■□□□ 1.21
LDLR-204ENST00000545707 PPP1R15AO75807 674 aaPredicted RBP22.56■■□□□ 1.2
LDLR-204ENST00000545707 EFCAB5A4FU69 1503 aa22.56■■□□□ 1.2
LDLR-204ENST00000545707 MTUS2Q5JR59 1369 aa22.54■■□□□ 1.2
LDLR-204ENST00000545707 FGD6Q6ZV73 1430 aa22.53■■□□□ 1.2
LDLR-204ENST00000545707 AQRO60306 1485 aaKnown RBP eCLIP22.52■■□□□ 1.22e-7■■■■■ 26.9
LDLR-204ENST00000545707 URB2Q14146 1524 aaKnown RBP22.52■■□□□ 1.2
LDLR-204ENST00000545707 DNAJC5BQ9UF47 199 aa22.52■■□□□ 1.2
LDLR-204ENST00000545707 FMN1Q68DA7 1419 aa22.52■■□□□ 1.2
LDLR-204ENST00000545707 PTPRKQ15262 1439 aa22.51■■□□□ 1.19
LDLR-204ENST00000545707 CUL7Q14999 1698 aa22.5■■□□□ 1.19
LDLR-204ENST00000545707 SNAPC4Q5SXM2 1469 aa22.5■■□□□ 1.19
LDLR-204ENST00000545707 TIMELESSQ9UNS1 1208 aa22.49■■□□□ 1.19
LDLR-204ENST00000545707 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.49■■□□□ 1.19
LDLR-204ENST00000545707 CTTNBP2Q8WZ74 1663 aa22.48■■□□□ 1.19
LDLR-204ENST00000545707 CCDC18Q5T9S5 1454 aa22.44■■□□□ 1.18
LDLR-204ENST00000545707 BCANQ96GW7 911 aa22.43■■□□□ 1.18
LDLR-204ENST00000545707 TONSLQ96HA7 1378 aa22.43■■□□□ 1.18
LDLR-204ENST00000545707 GAPVD1Q14C86 1478 aa22.42■■□□□ 1.18
LDLR-204ENST00000545707 NCOA2Q15596 1464 aa22.4■■□□□ 1.18
LDLR-204ENST00000545707 CHIC2Q9UKJ5 165 aa22.39■■□□□ 1.17
LDLR-204ENST00000545707 HFM1A2PYH4 1435 aa22.38■■□□□ 1.17
LDLR-204ENST00000545707 TRIM52Q96A61 297 aa22.38■■□□□ 1.17
LDLR-204ENST00000545707 RRP7BPQ9NSQ0 103 aa22.37■■□□□ 1.17
LDLR-204ENST00000545707 LRRIQ1Q96JM4 1722 aa22.37■■□□□ 1.17
LDLR-204ENST00000545707 NAIPQ13075 1403 aa22.36■■□□□ 1.17
LDLR-204ENST00000545707 ARID3CA6NKF2 412 aa22.36■■□□□ 1.17
LDLR-204ENST00000545707 ANP32CO43423 234 aa22.36■■□□□ 1.17
LDLR-204ENST00000545707 MYOM3Q5VTT5 1437 aa22.36■■□□□ 1.17
LDLR-204ENST00000545707 UACAQ9BZF9 1416 aa22.36■■□□□ 1.17
LDLR-204ENST00000545707 GRIN2BQ13224 1484 aa22.36■■□□□ 1.17
LDLR-204ENST00000545707 SAMD9Q5K651 1589 aa22.35■■□□□ 1.17
LDLR-204ENST00000545707 ABCA5Q8WWZ7 1642 aa22.35■■□□□ 1.17
LDLR-204ENST00000545707 FKBP8Q14318 412 aa22.35■■□□□ 1.17
LDLR-204ENST00000545707 LAMC3Q9Y6N6 1575 aa22.34■■□□□ 1.17
LDLR-204ENST00000545707 TSHZ2Q9NRE2 1034 aa22.34■■□□□ 1.17
LDLR-204ENST00000545707 PTPN23Q9H3S7 1636 aa22.34■■□□□ 1.17
LDLR-204ENST00000545707 PDS5BQ9NTI5 1447 aa22.29■■□□□ 1.16
LDLR-204ENST00000545707 MAGI3Q5TCQ9 1506 aa22.29■■□□□ 1.16
LDLR-204ENST00000545707 CCER2I3L3R5 266 aa22.27■■□□□ 1.16
LDLR-204ENST00000545707 SUPT6HQ7KZ85 1726 aaKnown RBP22.24■■□□□ 1.15
LDLR-204ENST00000545707 MYT1Q01538 1121 aa22.24■■□□□ 1.15
LDLR-204ENST00000545707 EHBP1L1Q8N3D4 1523 aa22.23■■□□□ 1.15
LDLR-204ENST00000545707 UGGT2Q9NYU1 1516 aa22.22■■□□□ 1.15
LDLR-204ENST00000545707 FOXD1Q16676 465 aa22.2■■□□□ 1.14
LDLR-204ENST00000545707 KIF21AQ7Z4S6 1674 aa22.2■■□□□ 1.14
LDLR-204ENST00000545707 KDM5BQ9UGL1 1544 aa22.19■■□□□ 1.14
LDLR-204ENST00000545707 THOC2Q8NI27 1593 aaKnown RBP22.17■■□□□ 1.14
LDLR-204ENST00000545707 TARBP1Q13395 1621 aaKnown RBP22.17■■□□□ 1.14
LDLR-204ENST00000545707 ARHGEF11O15085 1522 aa22.16■■□□□ 1.14
LDLR-204ENST00000545707 HSPA5P11021 654 aaKnown RBP22.16■■□□□ 1.14
LDLR-204ENST00000545707 CDK13Q14004 1512 aaKnown RBP22.16■■□□□ 1.14
LDLR-204ENST00000545707 DENND4BO75064 1496 aaPredicted RBP22.16■■□□□ 1.14
LDLR-204ENST00000545707 KDM6BO15054 1643 aa22.14■■□□□ 1.13
LDLR-204ENST00000545707 NEFLP07196 543 aa22.14■■□□□ 1.13
LDLR-204ENST00000545707 EPRSP07814 1512 aaKnown RBP22.13■■□□□ 1.13
LDLR-204ENST00000545707 MPHOSPH9Q99550 1183 aa22.12■■□□□ 1.13
LDLR-204ENST00000545707 WASHC2AQ641Q2 1341 aa22.12■■□□□ 1.13
LDLR-204ENST00000545707 TCOF1Q13428 1488 aaKnown RBP22.1■■□□□ 1.13
LDLR-204ENST00000545707 L3MBTL2Q969R5 705 aa22.09■■□□□ 1.13
LDLR-204ENST00000545707 IQGAP2Q13576 1575 aa22.08■■□□□ 1.13
LDLR-204ENST00000545707 HNRNPUQ00839 825 aaKnown RBP eCLIP22.08■■□□□ 1.12
LDLR-204ENST00000545707 HECW1Q76N89 1606 aa22.07■■□□□ 1.12
LDLR-204ENST00000545707 ZNF644Q9H582 1327 aaPredicted RBP22.06■■□□□ 1.12
LDLR-204ENST00000545707 EIF4G2P78344 907 aaKnown RBP eCLIP22.05■■□□□ 1.12
LDLR-204ENST00000545707 C11orf95C9JLR9 678 aaPredicted RBP22.04■■□□□ 1.12
LDLR-204ENST00000545707 PBRM1Q86U86 1689 aa22.03■■□□□ 1.12
LDLR-204ENST00000545707 CCDC184Q52MB2 194 aa22.01■■□□□ 1.11
LDLR-204ENST00000545707 MIA2Q96PC5 1412 aa22.01■■□□□ 1.11
LDLR-204ENST00000545707 GCC2Q8IWJ2 1684 aa22■■□□□ 1.11
LDLR-204ENST00000545707 IRX6P78412 446 aaPredicted RBP22■■□□□ 1.11
LDLR-204ENST00000545707 WDR62O43379 1518 aa22■■□□□ 1.11
LDLR-204ENST00000545707 ADAMTS12P58397 1594 aa22■■□□□ 1.11
LDLR-204ENST00000545707 ZNF608Q9ULD9 1512 aaPredicted RBP21.99■■□□□ 1.11
LDLR-204ENST00000545707 NBPF8Q3BBV2 869 aa21.98■■□□□ 1.11
LDLR-204ENST00000545707 AKNAQ7Z591 1439 aa21.97■■□□□ 1.11
LDLR-204ENST00000545707 DAPK1P53355 1430 aa21.94■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms