RNA–Protein interactions for RNA: ENST00000544910.5

VPS50-220, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2 BASIC

Gene VPS50, Length 5,736 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-220ENST00000544910 SETD5Q9C0A6 1442 aa8.06□□□□□ -1.12
VPS50-220ENST00000544910 BCANQ96GW7 911 aa8.06□□□□□ -1.12
VPS50-220ENST00000544910 DDX10Q13206 875 aaKnown RBP8.05□□□□□ -1.12
VPS50-220ENST00000544910 FANCD2Q9BXW9 1451 aa8.04□□□□□ -1.12
VPS50-220ENST00000544910 FGD5Q6ZNL6 1462 aa8.03□□□□□ -1.12
VPS50-220ENST00000544910 CNGB1Q14028 1251 aaPredicted RBP8.03□□□□□ -1.12
VPS50-220ENST00000544910 CHIC2Q9UKJ5 165 aa8.03□□□□□ -1.12
VPS50-220ENST00000544910 CUX1P39880 1505 aa8.03□□□□□ -1.12
VPS50-220ENST00000544910 CFTRP13569 1480 aa8.03□□□□□ -1.12
VPS50-220ENST00000544910 BIVM-ERCC5R4GMW8 1640 aa8.03□□□□□ -1.12
VPS50-220ENST00000544910 ZNF777Q9ULD5 760 aaPredicted RBP8.03□□□□□ -1.12
VPS50-220ENST00000544910 ZNF326Q5BKZ1 582 aaKnown RBP8.02□□□□□ -1.12
VPS50-220ENST00000544910 MYT1LQ9UL68 1186 aa8.02□□□□□ -1.13
VPS50-220ENST00000544910 ARAP1Q96P48 1450 aa8.02□□□□□ -1.13
VPS50-220ENST00000544910 FMN1Q68DA7 1419 aa8.02□□□□□ -1.13
VPS50-220ENST00000544910 PDS5BQ9NTI5 1447 aa8.02□□□□□ -1.13
VPS50-220ENST00000544910 RAB3GAP2Q9H2M9 1393 aa8.01□□□□□ -1.13
VPS50-220ENST00000544910 DHX57Q6P158 1386 aaKnown RBP8.01□□□□□ -1.13
VPS50-220ENST00000544910 PRXQ9BXM0 1461 aa8□□□□□ -1.13
VPS50-220ENST00000544910 FHOD3Q2V2M9 1422 aa8□□□□□ -1.13
VPS50-220ENST00000544910 RRP7BPQ9NSQ0 103 aa7.99□□□□□ -1.13
VPS50-220ENST00000544910 SIN3AQ96ST3 1273 aa7.98□□□□□ -1.13
VPS50-220ENST00000544910 IGF1RP08069 1367 aa7.98□□□□□ -1.13
VPS50-220ENST00000544910 FKBP8Q14318 412 aa7.98□□□□□ -1.13
VPS50-220ENST00000544910 TIMELESSQ9UNS1 1208 aa7.97□□□□□ -1.13
VPS50-220ENST00000544910 CHMP7Q8WUX9 453 aaPredicted RBP7.97□□□□□ -1.13
VPS50-220ENST00000544910 HIRIP3Q9BW71 556 aaPredicted RBP7.96□□□□□ -1.14
VPS50-220ENST00000544910 CC2D2AQ9P2K1 1620 aa7.96□□□□□ -1.14
VPS50-220ENST00000544910 RRBP1Q9P2E9 1410 aaKnown RBP7.96□□□□□ -1.14
VPS50-220ENST00000544910 RAD54L2Q9Y4B4 1467 aa7.94□□□□□ -1.14
VPS50-220ENST00000544910 TDRD9Q8NDG6 1382 aaKnown RBP7.94□□□□□ -1.14
VPS50-220ENST00000544910 ERCC6Q03468 1493 aa7.94□□□□□ -1.14
VPS50-220ENST00000544910 LRRC9Q6ZRR7 1453 aa7.94□□□□□ -1.14
VPS50-220ENST00000544910 EIF4G2P78344 907 aaKnown RBP eCLIP7.94□□□□□ -1.14
VPS50-220ENST00000544910 HNRNPUQ00839 825 aaKnown RBP eCLIP7.94□□□□□ -1.14
VPS50-220ENST00000544910 EFCAB5A4FU69 1503 aa7.93□□□□□ -1.14
VPS50-220ENST00000544910 TIAM1Q13009 1591 aa7.93□□□□□ -1.14
VPS50-220ENST00000544910 DNMBPQ6XZF7 1577 aa7.92□□□□□ -1.14
VPS50-220ENST00000544910 SLC4A1APQ9BWU0 796 aaKnown RBP7.92□□□□□ -1.14
VPS50-220ENST00000544910 FYCO1Q9BQS8 1478 aa7.92□□□□□ -1.14
VPS50-220ENST00000544910 CASKIN1Q8WXD9 1431 aa7.9□□□□□ -1.14
VPS50-220ENST00000544910 GAPVD1Q14C86 1478 aa7.9□□□□□ -1.14
VPS50-220ENST00000544910 FAM9BQ8IZU0 186 aa7.89□□□□□ -1.15
VPS50-220ENST00000544910 CFDP1Q9UEE9 299 aaPredicted RBP7.89□□□□□ -1.15
VPS50-220ENST00000544910 CUL7Q14999 1698 aa7.89□□□□□ -1.15
VPS50-220ENST00000544910 TSPY4P0CV99 314 aa7.89□□□□□ -1.15
VPS50-220ENST00000544910 TSPY10P0CW01 314 aa7.89□□□□□ -1.15
VPS50-220ENST00000544910 CCDC18Q5T9S5 1454 aa7.89□□□□□ -1.15
VPS50-220ENST00000544910 TOPBP1Q92547 1522 aa7.89□□□□□ -1.15
VPS50-220ENST00000544910 PHLDB1Q86UU1 1377 aa7.88□□□□□ -1.15
VPS50-220ENST00000544910 SUPT16HQ9Y5B9 1047 aaKnown RBP7.88□□□□□ -1.15
VPS50-220ENST00000544910 PLEKHD1A6NEE1 506 aa7.88□□□□□ -1.15
VPS50-220ENST00000544910 CCER2I3L3R5 266 aa7.88□□□□□ -1.15
VPS50-220ENST00000544910 PRDM2Q13029 1718 aa7.88□□□□□ -1.15
VPS50-220ENST00000544910 MRS2Q9HD23 443 aa7.87□□□□□ -1.15
VPS50-220ENST00000544910 PCF11O94913 1555 aaKnown RBP7.87□□□□□ -1.15
VPS50-220ENST00000544910 FGD6Q6ZV73 1430 aa7.86□□□□□ -1.15
VPS50-220ENST00000544910 POLA1P09884 1462 aaPredicted RBP7.86□□□□□ -1.15
VPS50-220ENST00000544910 NESP48681 1621 aa7.85□□□□□ -1.15
VPS50-220ENST00000544910 MAP3K1Q13233 1512 aa7.85□□□□□ -1.15
VPS50-220ENST00000544910 PPP1R15AO75807 674 aaPredicted RBP7.85□□□□□ -1.15
VPS50-220ENST00000544910 ABCA10Q8WWZ4 1543 aa7.85□□□□□ -1.15
VPS50-220ENST00000544910 EHBP1L1Q8N3D4 1523 aa7.85□□□□□ -1.15
VPS50-220ENST00000544910 MYOM3Q5VTT5 1437 aa7.84□□□□□ -1.15
VPS50-220ENST00000544910 CARMIL2Q6F5E8 1435 aa7.84□□□□□ -1.15
VPS50-220ENST00000544910 GLIPR1L2Q4G1C9 344 aa7.84□□□□□ -1.15
VPS50-220ENST00000544910 LAMC3Q9Y6N6 1575 aa7.83□□□□□ -1.16
VPS50-220ENST00000544910 NCOA2Q15596 1464 aa7.83□□□□□ -1.16
VPS50-220ENST00000544910 HSPA5P11021 654 aaKnown RBP7.83□□□□□ -1.16
VPS50-220ENST00000544910 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.83□□□□□ -1.16
VPS50-220ENST00000544910 KDM2AQ9Y2K7 1162 aa7.83□□□□□ -1.16
VPS50-220ENST00000544910 HECW1Q76N89 1606 aa7.82□□□□□ -1.16
VPS50-220ENST00000544910 SUPT6HQ7KZ85 1726 aaKnown RBP7.82□□□□□ -1.16
VPS50-220ENST00000544910 MPHOSPH9Q99550 1183 aa7.82□□□□□ -1.16
VPS50-220ENST00000544910 TMC1Q8TDI8 760 aa7.82□□□□□ -1.16
VPS50-220ENST00000544910 AQRO60306 1485 aaKnown RBP eCLIP7.81□□□□□ -1.16
VPS50-220ENST00000544910 UACAQ9BZF9 1416 aa7.81□□□□□ -1.16
VPS50-220ENST00000544910 CTTNBP2Q8WZ74 1663 aa7.8□□□□□ -1.16
VPS50-220ENST00000544910 IRX6P78412 446 aaPredicted RBP7.8□□□□□ -1.16
VPS50-220ENST00000544910 MRC2Q9UBG0 1479 aa7.8□□□□□ -1.16
VPS50-220ENST00000544910 CFAP43Q8NDM7 1665 aa7.79□□□□□ -1.16
VPS50-220ENST00000544910 FOXD1Q16676 465 aa7.79□□□□□ -1.16
VPS50-220ENST00000544910 CARD11Q9BXL7 1154 aa7.79□□□□□ -1.16
VPS50-220ENST00000544910 ANKRD30AQ9BXX3 1397 aa7.79□□□□□ -1.16
VPS50-220ENST00000544910 GRIN2BQ13224 1484 aa7.79□□□□□ -1.16
VPS50-220ENST00000544910 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.78□□□□□ -1.16
VPS50-220ENST00000544910 ANP32AP39687 249 aaKnown RBP7.77□□□□□ -1.16
VPS50-220ENST00000544910 KCNH8Q96L42 1107 aa7.76□□□□□ -1.17
VPS50-220ENST00000544910 IFT140Q96RY7 1462 aa7.76□□□□□ -1.17
VPS50-220ENST00000544910 PKD2Q13563 968 aa7.75□□□□□ -1.17
VPS50-220ENST00000544910 CCDC136Q96JN2 1154 aa7.75□□□□□ -1.17
VPS50-220ENST00000544910 HFM1A2PYH4 1435 aa7.75□□□□□ -1.17
VPS50-220ENST00000544910 PTPN23Q9H3S7 1636 aa7.75□□□□□ -1.17
VPS50-220ENST00000544910 URB2Q14146 1524 aaKnown RBP7.75□□□□□ -1.17
VPS50-220ENST00000544910 IQGAP2Q13576 1575 aa7.75□□□□□ -1.17
VPS50-220ENST00000544910 L3MBTL2Q969R5 705 aa7.75□□□□□ -1.17
VPS50-220ENST00000544910 WDR97A6NE52 1622 aa7.74□□□□□ -1.17
VPS50-220ENST00000544910 CANXP27824 592 aaKnown RBP7.74□□□□□ -1.17
VPS50-220ENST00000544910 THOC2Q8NI27 1593 aaKnown RBP7.73□□□□□ -1.17
VPS50-220ENST00000544910 PPP4R2Q9NY27 417 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms