RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 PLSCR2Q9NRY7 297 aa8.12□□□□□ -1.11
SNHG1-220ENST00000544550 CEP164Q9UPV0 1460 aa8.11□□□□□ -1.11
SNHG1-220ENST00000544550 C19orf67A6NJJ6 358 aa8.1□□□□□ -1.11
SNHG1-220ENST00000544550 GABBR2O75899 941 aa8.09□□□□□ -1.11
SNHG1-220ENST00000544550 PRKAR2AP13861 404 aaKnown RBP8.09□□□□□ -1.11
SNHG1-220ENST00000544550 RIMBP3CA6NJZ7 1639 aa8.08□□□□□ -1.12
SNHG1-220ENST00000544550 RIMBP3BA6NNM3 1639 aa8.08□□□□□ -1.12
SNHG1-220ENST00000544550 RIMBP3Q9UFD9 1639 aa8.08□□□□□ -1.12
SNHG1-220ENST00000544550 FANCD2Q9BXW9 1451 aa8.06□□□□□ -1.12
SNHG1-220ENST00000544550 ARHGEF11O15085 1522 aa8.06□□□□□ -1.12
SNHG1-220ENST00000544550 SPDYE2BA6NHP3 402 aa8.05□□□□□ -1.12
SNHG1-220ENST00000544550 SPDYE6P0CI01 402 aa8.05□□□□□ -1.12
SNHG1-220ENST00000544550 SPDYE2Q495Y8 402 aa8.05□□□□□ -1.12
SNHG1-220ENST00000544550 SPDYE1Q8NFV5 336 aaPredicted RBP8.05□□□□□ -1.12
SNHG1-220ENST00000544550 CLCN6P51797 869 aa8.04□□□□□ -1.12
SNHG1-220ENST00000544550 MROH2BQ7Z745 1585 aa8.04□□□□□ -1.12
SNHG1-220ENST00000544550 CYB5RLQ6IPT4 315 aa8.03□□□□□ -1.12
SNHG1-220ENST00000544550 CFTRP13569 1480 aa8□□□□□ -1.13
SNHG1-220ENST00000544550 URB2Q14146 1524 aaKnown RBP7.98□□□□□ -1.13
SNHG1-220ENST00000544550 IFT140Q96RY7 1462 aa7.98□□□□□ -1.13
SNHG1-220ENST00000544550 MKRN4PQ13434 485 aaPredicted RBP7.97□□□□□ -1.13
SNHG1-220ENST00000544550 CLEC11AQ9Y240 323 aa7.97□□□□□ -1.13
SNHG1-220ENST00000544550 RSF1Q96T23 1441 aaPredicted RBP7.95□□□□□ -1.14
SNHG1-220ENST00000544550 FBLN2P98095 1184 aa7.95□□□□□ -1.14
SNHG1-220ENST00000544550 ARAP1Q96P48 1450 aa7.94□□□□□ -1.14
SNHG1-220ENST00000544550 ZNF608Q9ULD9 1512 aaPredicted RBP7.93□□□□□ -1.14
SNHG1-220ENST00000544550 WIZO95785 1651 aa7.9□□□□□ -1.14
SNHG1-220ENST00000544550 SPDYE4A6NLX3 237 aa7.89□□□□□ -1.15
SNHG1-220ENST00000544550 ABCC8Q09428 1581 aa7.88□□□□□ -1.15
SNHG1-220ENST00000544550 EIF4G3O43432 1585 aaKnown RBP7.88□□□□□ -1.15
SNHG1-220ENST00000544550 PCDH10Q9P2E7 1040 aa7.86□□□□□ -1.15
SNHG1-220ENST00000544550 TOPBP1Q92547 1522 aa7.86□□□□□ -1.15
SNHG1-220ENST00000544550 DCBLD2Q96PD2 775 aa7.85□□□□□ -1.15
SNHG1-220ENST00000544550 TOP2AP11388 1531 aaKnown RBP7.84□□□□□ -1.15
SNHG1-220ENST00000544550 PROM2Q8N271 834 aa7.84□□□□□ -1.15
SNHG1-220ENST00000544550 AQRO60306 1485 aaKnown RBP eCLIP7.83□□□□□ -1.163e-14■■■■■ 46.6
SNHG1-220ENST00000544550 AMER1Q5JTC6 1135 aaPredicted RBP7.83□□□□□ -1.16
SNHG1-220ENST00000544550 CHD1O14646 1710 aa7.83□□□□□ -1.16
SNHG1-220ENST00000544550 PRR29P0C7W0 189 aa7.82□□□□□ -1.16
SNHG1-220ENST00000544550 POTEIP0CG38 1075 aa7.82□□□□□ -1.16
SNHG1-220ENST00000544550 ZNF692Q9BU19 519 aaPredicted RBP7.82□□□□□ -1.16
SNHG1-220ENST00000544550 SSUH2Q9Y2M2 353 aa7.82□□□□□ -1.16
SNHG1-220ENST00000544550 CD44P16070 742 aaKnown RBP7.81□□□□□ -1.16
SNHG1-220ENST00000544550 RTN4Q9NQC3 1192 aaKnown RBP7.81□□□□□ -1.16
SNHG1-220ENST00000544550 DNMBPQ6XZF7 1577 aa7.8□□□□□ -1.16
SNHG1-220ENST00000544550 PRDM2Q13029 1718 aa7.8□□□□□ -1.16
SNHG1-220ENST00000544550 SYNJ1O43426 1573 aa7.8□□□□□ -1.16
SNHG1-220ENST00000544550 CLASP1Q7Z460 1538 aa7.79□□□□□ -1.16
SNHG1-220ENST00000544550 CHMP7Q8WUX9 453 aaPredicted RBP7.79□□□□□ -1.16
SNHG1-220ENST00000544550 TARBP1Q13395 1621 aaKnown RBP7.78□□□□□ -1.16
SNHG1-220ENST00000544550 CHADLQ6NUI6 762 aa7.78□□□□□ -1.16
SNHG1-220ENST00000544550 POTEMA6NI47 508 aa7.77□□□□□ -1.17
SNHG1-220ENST00000544550 FBXO3Q9UK99 471 aa7.77□□□□□ -1.17
SNHG1-220ENST00000544550 POLA1P09884 1462 aaPredicted RBP7.76□□□□□ -1.17
SNHG1-220ENST00000544550 GAPVD1Q14C86 1478 aa7.76□□□□□ -1.17
SNHG1-220ENST00000544550 SNAPC4Q5SXM2 1469 aa7.76□□□□□ -1.17
SNHG1-220ENST00000544550 WDR97A6NE52 1622 aa7.76□□□□□ -1.17
SNHG1-220ENST00000544550 MAGI1Q96QZ7 1491 aaPredicted RBP7.75□□□□□ -1.17
SNHG1-220ENST00000544550 CCDC88BA6NC98 1476 aa7.75□□□□□ -1.17
SNHG1-220ENST00000544550 ILDR1Q86SU0 546 aaPredicted RBP7.74□□□□□ -1.17
SNHG1-220ENST00000544550 SOGA1O94964 1423 aa7.74□□□□□ -1.17
SNHG1-220ENST00000544550 TDRD9Q8NDG6 1382 aaKnown RBP7.73□□□□□ -1.17
SNHG1-220ENST00000544550 SYNJ2O15056 1496 aa7.73□□□□□ -1.17
SNHG1-220ENST00000544550 POTEGQ6S5H5 508 aa7.72□□□□□ -1.17
SNHG1-220ENST00000544550 FARP1Q9Y4F1 1045 aaPredicted RBP7.72□□□□□ -1.17
SNHG1-220ENST00000544550 GRIN2BQ13224 1484 aa7.72□□□□□ -1.17
SNHG1-220ENST00000544550 RAD54L2Q9Y4B4 1467 aa7.71□□□□□ -1.18
SNHG1-220ENST00000544550 ZNF579Q8NAF0 562 aaKnown RBP7.69□□□□□ -1.18
SNHG1-220ENST00000544550 OTUD5Q96G74 571 aa7.69□□□□□ -1.18
SNHG1-220ENST00000544550 VASPP50552 380 aaPredicted RBP7.66□□□□□ -1.18
SNHG1-220ENST00000544550 FGD5Q6ZNL6 1462 aa7.66□□□□□ -1.18
SNHG1-220ENST00000544550 KDM4FA0A1W2PPD8 638 aa7.63□□□□□ -1.19
SNHG1-220ENST00000544550 NPM1P06748 294 aaKnown RBP eCLIP7.61□□□□□ -1.19
SNHG1-220ENST00000544550 FAM69CQ0P6D2 419 aa7.61□□□□□ -1.19
SNHG1-220ENST00000544550 MAMSTRQ6ZN01 415 aa7.61□□□□□ -1.19
SNHG1-220ENST00000544550 ZRANB1Q9UGI0 708 aa7.61□□□□□ -1.19
SNHG1-220ENST00000544550 ABCC10Q5T3U5 1492 aa7.61□□□□□ -1.19
SNHG1-220ENST00000544550 CEP170Q5SW79 1584 aa7.6□□□□□ -1.19
SNHG1-220ENST00000544550 GRIN2AQ12879 1464 aa7.6□□□□□ -1.19
SNHG1-220ENST00000544550 NUP160Q12769 1436 aa7.6□□□□□ -1.19
SNHG1-220ENST00000544550 ERCC6L2Q5T890 1561 aa7.59□□□□□ -1.19
SNHG1-220ENST00000544550 IFNLR1Q8IU57 520 aaPredicted RBP7.59□□□□□ -1.19
SNHG1-220ENST00000544550 CUX1P39880 1505 aa7.58□□□□□ -1.2
SNHG1-220ENST00000544550 PBRM1Q86U86 1689 aa7.58□□□□□ -1.2
SNHG1-220ENST00000544550 PAK3O75914 559 aaPredicted RBP7.58□□□□□ -1.2
SNHG1-220ENST00000544550 ABCA10Q8WWZ4 1543 aa7.57□□□□□ -1.2
SNHG1-220ENST00000544550 KIF13AQ9H1H9 1805 aa7.57□□□□□ -1.2
SNHG1-220ENST00000544550 KDM6BO15054 1643 aa7.57□□□□□ -1.2
SNHG1-220ENST00000544550 MAPKBP1O60336 1514 aa7.57□□□□□ -1.2
SNHG1-220ENST00000544550 STAG3Q9UJ98 1225 aa7.56□□□□□ -1.2
SNHG1-220ENST00000544550 SHROOM2Q13796 1616 aa7.56□□□□□ -1.2
SNHG1-220ENST00000544550 ABCA5Q8WWZ7 1642 aa7.56□□□□□ -1.2
SNHG1-220ENST00000544550 FHAD1B1AJZ9 1412 aa7.54□□□□□ -1.2
SNHG1-220ENST00000544550 PRG4Q92954 1404 aaPredicted RBP7.54□□□□□ -1.2
SNHG1-220ENST00000544550 DIP2BQ9P265 1576 aa7.54□□□□□ -1.2
SNHG1-220ENST00000544550 POTEB2H3BUK9 544 aa7.53□□□□□ -1.2
SNHG1-220ENST00000544550 GALR2O43603 387 aaPredicted RBP7.53□□□□□ -1.2
SNHG1-220ENST00000544550 ADAMTS12P58397 1594 aa7.53□□□□□ -1.2
SNHG1-220ENST00000544550 JPH4Q96JJ6 628 aa7.52□□□□□ -1.21
SNHG1-220ENST00000544550 FBXO41Q8TF61 875 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms