RNA–Protein interactions for RNA: ENST00000541562.5

VARS2-211, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

TSL 2 BASIC

Gene VARS2, Length 3,566 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-211ENST00000541562 TRIM52Q96A61 297 aa21.64■■□□□ 1.05
VARS2-211ENST00000541562 SENP3-EIF4A1A0A087X0R7 540 aa21.63■■□□□ 1.05
VARS2-211ENST00000541562 CADPSQ9ULU8 1353 aa21.61■■□□□ 1.05
VARS2-211ENST00000541562 FGD5Q6ZNL6 1462 aa21.61■■□□□ 1.05
VARS2-211ENST00000541562 PHLDB1Q86UU1 1377 aa21.61■■□□□ 1.05
VARS2-211ENST00000541562 PELP1Q8IZL8 1130 aaKnown RBP21.61■■□□□ 1.05
VARS2-211ENST00000541562 RRP7BPQ9NSQ0 103 aa21.6■■□□□ 1.05
VARS2-211ENST00000541562 CFTRP13569 1480 aa21.59■■□□□ 1.05
VARS2-211ENST00000541562 FOXD1Q16676 465 aa21.54■■□□□ 1.04
VARS2-211ENST00000541562 POLR3GLQ9BT43 218 aa21.49■■□□□ 1.03
VARS2-211ENST00000541562 FBLN2P98095 1184 aa21.48■■□□□ 1.03
VARS2-211ENST00000541562 FANCD2Q9BXW9 1451 aa21.46■■□□□ 1.03
VARS2-211ENST00000541562 BIVM-ERCC5R4GMW8 1640 aa21.45■■□□□ 1.03
VARS2-211ENST00000541562 IRX6P78412 446 aaPredicted RBP21.44■■□□□ 1.02
VARS2-211ENST00000541562 SUPT16HQ9Y5B9 1047 aaKnown RBP21.44■■□□□ 1.02
VARS2-211ENST00000541562 MTUS2Q5JR59 1369 aa21.43■■□□□ 1.02
VARS2-211ENST00000541562 ERICH3Q5RHP9 1530 aa21.42■■□□□ 1.02
VARS2-211ENST00000541562 FKBP8Q14318 412 aa21.41■■□□□ 1.02
VARS2-211ENST00000541562 SETD5Q9C0A6 1442 aa21.4■■□□□ 1.02
VARS2-211ENST00000541562 RRBP1Q9P2E9 1410 aaKnown RBP21.39■■□□□ 1.02
VARS2-211ENST00000541562 CC2D2AQ9P2K1 1620 aa21.39■■□□□ 1.01
VARS2-211ENST00000541562 ZNF326Q5BKZ1 582 aaKnown RBP21.38■■□□□ 1.01
VARS2-211ENST00000541562 HMGXB3Q12766 1538 aa21.38■■□□□ 1.01
VARS2-211ENST00000541562 ZNF777Q9ULD5 760 aaPredicted RBP21.35■■□□□ 1.01
VARS2-211ENST00000541562 LRRC9Q6ZRR7 1453 aa21.33■■□□□ 1.01
VARS2-211ENST00000541562 TONSLQ96HA7 1378 aa21.3■■□□□ 1
VARS2-211ENST00000541562 WDR97A6NE52 1622 aa21.29■■□□□ 1
VARS2-211ENST00000541562 POLA1P09884 1462 aaPredicted RBP21.27■■□□□ 1
VARS2-211ENST00000541562 ANP32CO43423 234 aa21.27■■□□□ 1
VARS2-211ENST00000541562 CLSPNQ9HAW4 1339 aa21.27■■□□□ 1
VARS2-211ENST00000541562 PPP1R15AO75807 674 aaPredicted RBP21.25■□□□□ 0.99
VARS2-211ENST00000541562 TIAM1Q13009 1591 aa21.24■□□□□ 0.99
VARS2-211ENST00000541562 PCF11O94913 1555 aaKnown RBP21.23■□□□□ 0.99
VARS2-211ENST00000541562 MAPKBP1O60336 1514 aa21.22■□□□□ 0.99
VARS2-211ENST00000541562 ZNF644Q9H582 1327 aaPredicted RBP21.21■□□□□ 0.99
VARS2-211ENST00000541562 FHAD1B1AJZ9 1412 aa21.2■□□□□ 0.98
VARS2-211ENST00000541562 TOPBP1Q92547 1522 aa21.2■□□□□ 0.98
VARS2-211ENST00000541562 AQRO60306 1485 aaKnown RBP eCLIP21.18■□□□□ 0.984e-6■■■■□ 23.2
VARS2-211ENST00000541562 HNRNPUQ00839 825 aaKnown RBP eCLIP21.18■□□□□ 0.98
VARS2-211ENST00000541562 PTPRKQ15262 1439 aa21.17■□□□□ 0.98
VARS2-211ENST00000541562 FAM9BQ8IZU0 186 aa21.16■□□□□ 0.98
VARS2-211ENST00000541562 NEFLP07196 543 aa21.12■□□□□ 0.97
VARS2-211ENST00000541562 PDS5BQ9NTI5 1447 aa21.11■□□□□ 0.97
VARS2-211ENST00000541562 CCDC184Q52MB2 194 aa21.1■□□□□ 0.97
VARS2-211ENST00000541562 HSPA5P11021 654 aaKnown RBP21.08■□□□□ 0.97
VARS2-211ENST00000541562 URB2Q14146 1524 aaKnown RBP21.08■□□□□ 0.97
VARS2-211ENST00000541562 TSHZ2Q9NRE2 1034 aa21.07■□□□□ 0.96
VARS2-211ENST00000541562 FGD6Q6ZV73 1430 aa21.07■□□□□ 0.96
VARS2-211ENST00000541562 GAPVD1Q14C86 1478 aa21.05■□□□□ 0.96
VARS2-211ENST00000541562 CCDC18Q5T9S5 1454 aa21.04■□□□□ 0.96
VARS2-211ENST00000541562 L3MBTL2Q969R5 705 aa21.03■□□□□ 0.96
VARS2-211ENST00000541562 KDM2AQ9Y2K7 1162 aa21.02■□□□□ 0.96
VARS2-211ENST00000541562 SLC4A1APQ9BWU0 796 aaKnown RBP21.02■□□□□ 0.96
VARS2-211ENST00000541562 C11orf95C9JLR9 678 aaPredicted RBP21■□□□□ 0.95
VARS2-211ENST00000541562 MPHOSPH9Q99550 1183 aa21■□□□□ 0.95
VARS2-211ENST00000541562 SALL2Q9Y467 1007 aaPredicted RBP21■□□□□ 0.95
VARS2-211ENST00000541562 CASKIN1Q8WXD9 1431 aa20.99■□□□□ 0.95
VARS2-211ENST00000541562 NCOA2Q15596 1464 aa20.99■□□□□ 0.95
VARS2-211ENST00000541562 FMN1Q68DA7 1419 aa20.98■□□□□ 0.95
VARS2-211ENST00000541562 ABCA10Q8WWZ4 1543 aa20.97■□□□□ 0.95
VARS2-211ENST00000541562 CDK13Q14004 1512 aaKnown RBP20.96■□□□□ 0.95
VARS2-211ENST00000541562 DNMBPQ6XZF7 1577 aa20.95■□□□□ 0.95
VARS2-211ENST00000541562 CHMP7Q8WUX9 453 aaPredicted RBP20.95■□□□□ 0.94
VARS2-211ENST00000541562 WASHC2AQ641Q2 1341 aa20.92■□□□□ 0.94
VARS2-211ENST00000541562 EIF4G2P78344 907 aaKnown RBP eCLIP20.9■□□□□ 0.94
VARS2-211ENST00000541562 NBPF8Q3BBV2 869 aa20.9■□□□□ 0.94
VARS2-211ENST00000541562 MRS2Q9HD23 443 aa20.9■□□□□ 0.94
VARS2-211ENST00000541562 FYCO1Q9BQS8 1478 aa20.9■□□□□ 0.94
VARS2-211ENST00000541562 NAIPQ13075 1403 aa20.89■□□□□ 0.94
VARS2-211ENST00000541562 MYOM3Q5VTT5 1437 aa20.87■□□□□ 0.93
VARS2-211ENST00000541562 CFDP1Q9UEE9 299 aaPredicted RBP20.87■□□□□ 0.93
VARS2-211ENST00000541562 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.86■□□□□ 0.931e-7■■□□□ 14
VARS2-211ENST00000541562 ZNF608Q9ULD9 1512 aaPredicted RBP20.86■□□□□ 0.93
VARS2-211ENST00000541562 RGL3Q3MIN7 710 aa20.84■□□□□ 0.93
VARS2-211ENST00000541562 MAGI3Q5TCQ9 1506 aa20.82■□□□□ 0.92
VARS2-211ENST00000541562 SNAPC4Q5SXM2 1469 aa20.82■□□□□ 0.92
VARS2-211ENST00000541562 UACAQ9BZF9 1416 aa20.8■□□□□ 0.92
VARS2-211ENST00000541562 B4GALNT3Q6L9W6 998 aa20.79■□□□□ 0.92
VARS2-211ENST00000541562 SENP3Q9H4L4 574 aaPredicted RBP20.77■□□□□ 0.92
VARS2-211ENST00000541562 PKD2Q13563 968 aa20.77■□□□□ 0.92
VARS2-211ENST00000541562 HFM1A2PYH4 1435 aa20.77■□□□□ 0.92
VARS2-211ENST00000541562 HNRNPMP52272 730 aaKnown RBP eCLIP20.76■□□□□ 0.91
VARS2-211ENST00000541562 KDM6BO15054 1643 aa20.75■□□□□ 0.91
VARS2-211ENST00000541562 PRDM2Q13029 1718 aa20.75■□□□□ 0.91
VARS2-211ENST00000541562 RBM19Q9Y4C8 960 aaKnown RBP20.74■□□□□ 0.91
VARS2-211ENST00000541562 PRG4Q92954 1404 aaPredicted RBP20.74■□□□□ 0.91
VARS2-211ENST00000541562 CFAP43Q8NDM7 1665 aa20.72■□□□□ 0.91
VARS2-211ENST00000541562 MAP3K1Q13233 1512 aa20.72■□□□□ 0.91
VARS2-211ENST00000541562 KIF21AQ7Z4S6 1674 aa20.72■□□□□ 0.91
VARS2-211ENST00000541562 CCER2I3L3R5 266 aa20.71■□□□□ 0.91
VARS2-211ENST00000541562 TIMELESSQ9UNS1 1208 aa20.71■□□□□ 0.91
VARS2-211ENST00000541562 PTPN23Q9H3S7 1636 aa20.71■□□□□ 0.91
VARS2-211ENST00000541562 CDK11AQ9UQ88 783 aaPredicted RBP20.71■□□□□ 0.91
VARS2-211ENST00000541562 GRIN2BQ13224 1484 aa20.7■□□□□ 0.9
VARS2-211ENST00000541562 THOC2Q8NI27 1593 aaKnown RBP20.7■□□□□ 0.9
VARS2-211ENST00000541562 EFCAB5A4FU69 1503 aa20.7■□□□□ 0.9
VARS2-211ENST00000541562 EPRSP07814 1512 aaKnown RBP20.68■□□□□ 0.9
VARS2-211ENST00000541562 ERCC6Q03468 1493 aa20.67■□□□□ 0.9
VARS2-211ENST00000541562 CTTNBP2Q8WZ74 1663 aa20.67■□□□□ 0.9
VARS2-211ENST00000541562 LRRIQ1Q96JM4 1722 aa20.67■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms