RNA–Protein interactions for RNA: ENST00000540998.5

CDC42SE1-207, Transcript of CDC42 small effector 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CDC42SE1, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1-207ENST00000540998 PHLDB1Q86UU1 1377 aa14.86□□□□□ -0.03
CDC42SE1-207ENST00000540998 CUX2O14529 1486 aa14.84□□□□□ -0.03
CDC42SE1-207ENST00000540998 IGF1RP08069 1367 aa14.8□□□□□ -0.04
CDC42SE1-207ENST00000540998 SETD5Q9C0A6 1442 aa14.79□□□□□ -0.04
CDC42SE1-207ENST00000540998 TIAM1Q13009 1591 aa14.76□□□□□ -0.05
CDC42SE1-207ENST00000540998 CARMIL1Q5VZK9 1371 aa14.75□□□□□ -0.05
CDC42SE1-207ENST00000540998 PPP1R15AO75807 674 aaPredicted RBP14.75□□□□□ -0.05
CDC42SE1-207ENST00000540998 LRRC9Q6ZRR7 1453 aa14.74□□□□□ -0.05
CDC42SE1-207ENST00000540998 CFTRP13569 1480 aa14.74□□□□□ -0.05
CDC42SE1-207ENST00000540998 FHOD3Q2V2M9 1422 aa14.73□□□□□ -0.05
CDC42SE1-207ENST00000540998 IRX6P78412 446 aaPredicted RBP14.73□□□□□ -0.05
CDC42SE1-207ENST00000540998 NCAPD3P42695 1498 aa14.72□□□□□ -0.05
CDC42SE1-207ENST00000540998 ANP32EQ9BTT0 268 aa14.71□□□□□ -0.05
CDC42SE1-207ENST00000540998 FGD5Q6ZNL6 1462 aa14.69□□□□□ -0.06
CDC42SE1-207ENST00000540998 PCF11O94913 1555 aaKnown RBP14.69□□□□□ -0.06
CDC42SE1-207ENST00000540998 HMGXB3Q12766 1538 aa14.67□□□□□ -0.06
CDC42SE1-207ENST00000540998 ANP32CO43423 234 aa14.66□□□□□ -0.06
CDC42SE1-207ENST00000540998 RBM19Q9Y4C8 960 aaKnown RBP14.65□□□□□ -0.06
CDC42SE1-207ENST00000540998 NEFLP07196 543 aa14.64□□□□□ -0.07
CDC42SE1-207ENST00000540998 RAD54L2Q9Y4B4 1467 aa14.63□□□□□ -0.07
CDC42SE1-207ENST00000540998 PTPRKQ15262 1439 aa14.6□□□□□ -0.07
CDC42SE1-207ENST00000540998 TONSLQ96HA7 1378 aa14.6□□□□□ -0.07
CDC42SE1-207ENST00000540998 ARID3CA6NKF2 412 aa14.6□□□□□ -0.07
CDC42SE1-207ENST00000540998 CHIC2Q9UKJ5 165 aa14.59□□□□□ -0.07
CDC42SE1-207ENST00000540998 HNRNPUQ00839 825 aaKnown RBP eCLIP14.58□□□□□ -0.08
CDC42SE1-207ENST00000540998 CADPSQ9ULU8 1353 aa14.57□□□□□ -0.08
CDC42SE1-207ENST00000540998 CNGB1Q14028 1251 aaPredicted RBP14.57□□□□□ -0.08
CDC42SE1-207ENST00000540998 FHAD1B1AJZ9 1412 aa14.57□□□□□ -0.08
CDC42SE1-207ENST00000540998 AQRO60306 1485 aaKnown RBP eCLIP14.56□□□□□ -0.081e-6■■□□□ 12.2
CDC42SE1-207ENST00000540998 RRP7BPQ9NSQ0 103 aa14.56□□□□□ -0.08
CDC42SE1-207ENST00000540998 CCDC184Q52MB2 194 aa14.56□□□□□ -0.08
CDC42SE1-207ENST00000540998 SENP3-EIF4A1A0A087X0R7 540 aa14.55□□□□□ -0.08
CDC42SE1-207ENST00000540998 CFAP43Q8NDM7 1665 aa14.55□□□□□ -0.08
CDC42SE1-207ENST00000540998 MSH5O43196 834 aa14.55□□□□□ -0.08
CDC42SE1-207ENST00000540998 MAP3K1Q13233 1512 aa14.54□□□□□ -0.08
CDC42SE1-207ENST00000540998 FOXD1Q16676 465 aa14.54□□□□□ -0.08
CDC42SE1-207ENST00000540998 CCDC18Q5T9S5 1454 aa14.54□□□□□ -0.08
CDC42SE1-207ENST00000540998 CCER2I3L3R5 266 aa14.53□□□□□ -0.08
CDC42SE1-207ENST00000540998 MTUS2Q5JR59 1369 aa14.52□□□□□ -0.08
CDC42SE1-207ENST00000540998 FGD6Q6ZV73 1430 aa14.52□□□□□ -0.09
CDC42SE1-207ENST00000540998 NESP48681 1621 aa14.5□□□□□ -0.09
CDC42SE1-207ENST00000540998 FANCD2Q9BXW9 1451 aa14.49□□□□□ -0.09
CDC42SE1-207ENST00000540998 BCL11AQ9H165 835 aa14.49□□□□□ -0.09
CDC42SE1-207ENST00000540998 HSPA5P11021 654 aaKnown RBP14.48□□□□□ -0.09
CDC42SE1-207ENST00000540998 WASHC2AQ641Q2 1341 aa14.48□□□□□ -0.09
CDC42SE1-207ENST00000540998 CASKIN1Q8WXD9 1431 aa14.47□□□□□ -0.09
CDC42SE1-207ENST00000540998 FYCO1Q9BQS8 1478 aa14.47□□□□□ -0.09
CDC42SE1-207ENST00000540998 TDRD9Q8NDG6 1382 aaKnown RBP14.47□□□□□ -0.09
CDC42SE1-207ENST00000540998 C11orf95C9JLR9 678 aaPredicted RBP14.46□□□□□ -0.1
CDC42SE1-207ENST00000540998 TIMELESSQ9UNS1 1208 aa14.46□□□□□ -0.1
CDC42SE1-207ENST00000540998 PRDM2Q13029 1718 aa14.45□□□□□ -0.1
CDC42SE1-207ENST00000540998 POLA1P09884 1462 aaPredicted RBP14.45□□□□□ -0.1
CDC42SE1-207ENST00000540998 FAM9BQ8IZU0 186 aa14.45□□□□□ -0.1
CDC42SE1-207ENST00000540998 NAIPQ13075 1403 aa14.45□□□□□ -0.1
CDC42SE1-207ENST00000540998 PTPN23Q9H3S7 1636 aa14.43□□□□□ -0.1
CDC42SE1-207ENST00000540998 UACAQ9BZF9 1416 aa14.43□□□□□ -0.1
CDC42SE1-207ENST00000540998 KDM5BQ9UGL1 1544 aa14.42□□□□□ -0.1
CDC42SE1-207ENST00000540998 SNAPC4Q5SXM2 1469 aa14.42□□□□□ -0.1
CDC42SE1-207ENST00000540998 HFM1A2PYH4 1435 aa14.42□□□□□ -0.1
CDC42SE1-207ENST00000540998 LRRIQ1Q96JM4 1722 aa14.42□□□□□ -0.1
CDC42SE1-207ENST00000540998 NCOA2Q15596 1464 aa14.42□□□□□ -0.1
CDC42SE1-207ENST00000540998 B4GALNT3Q6L9W6 998 aa14.4□□□□□ -0.1
CDC42SE1-207ENST00000540998 TOPBP1Q92547 1522 aa14.4□□□□□ -0.1
CDC42SE1-207ENST00000540998 DNAJC5BQ9UF47 199 aa14.39□□□□□ -0.11
CDC42SE1-207ENST00000540998 KDM6BO15054 1643 aa14.39□□□□□ -0.11
CDC42SE1-207ENST00000540998 L3MBTL2Q969R5 705 aa14.38□□□□□ -0.11
CDC42SE1-207ENST00000540998 DENND4BO75064 1496 aaPredicted RBP14.37□□□□□ -0.11
CDC42SE1-207ENST00000540998 FMN1Q68DA7 1419 aa14.37□□□□□ -0.11
CDC42SE1-207ENST00000540998 POLR3GLQ9BT43 218 aa14.37□□□□□ -0.11
CDC42SE1-207ENST00000540998 ABCA10Q8WWZ4 1543 aa14.37□□□□□ -0.11
CDC42SE1-207ENST00000540998 MYOM3Q5VTT5 1437 aa14.37□□□□□ -0.11
CDC42SE1-207ENST00000540998 MAGI3Q5TCQ9 1506 aa14.36□□□□□ -0.11
CDC42SE1-207ENST00000540998 CC2D2AQ9P2K1 1620 aa14.36□□□□□ -0.11
CDC42SE1-207ENST00000540998 EFCAB5A4FU69 1503 aa14.35□□□□□ -0.11
CDC42SE1-207ENST00000540998 CDK11AQ9UQ88 783 aaPredicted RBP14.35□□□□□ -0.11
CDC42SE1-207ENST00000540998 CTTNBP2Q8WZ74 1663 aa14.35□□□□□ -0.11
CDC42SE1-207ENST00000540998 MRS2Q9HD23 443 aa14.34□□□□□ -0.11
CDC42SE1-207ENST00000540998 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.34□□□□□ -0.11
CDC42SE1-207ENST00000540998 EIF4G2P78344 907 aaKnown RBP eCLIP14.34□□□□□ -0.11
CDC42SE1-207ENST00000540998 NBPF8Q3BBV2 869 aa14.34□□□□□ -0.11
CDC42SE1-207ENST00000540998 DNMBPQ6XZF7 1577 aa14.34□□□□□ -0.11
CDC42SE1-207ENST00000540998 MPHOSPH9Q99550 1183 aa14.32□□□□□ -0.12
CDC42SE1-207ENST00000540998 ZNF326Q5BKZ1 582 aaKnown RBP14.31□□□□□ -0.12
CDC42SE1-207ENST00000540998 ZNF644Q9H582 1327 aaPredicted RBP14.3□□□□□ -0.12
CDC42SE1-207ENST00000540998 PRKRIP1Q9H875 184 aaPredicted RBP14.3□□□□□ -0.12
CDC42SE1-207ENST00000540998 GRIN2BQ13224 1484 aa14.3□□□□□ -0.12
CDC42SE1-207ENST00000540998 URB2Q14146 1524 aaKnown RBP14.29□□□□□ -0.12
CDC42SE1-207ENST00000540998 ERICH6Q7L0X2 663 aa14.29□□□□□ -0.12
CDC42SE1-207ENST00000540998 CDK13Q14004 1512 aaKnown RBP14.28□□□□□ -0.12
CDC42SE1-207ENST00000540998 CNTLNQ9NXG0 1405 aa14.27□□□□□ -0.13
CDC42SE1-207ENST00000540998 CUL7Q14999 1698 aa14.26□□□□□ -0.13
CDC42SE1-207ENST00000540998 SUPT6HQ7KZ85 1726 aaKnown RBP14.26□□□□□ -0.13
CDC42SE1-207ENST00000540998 CCDC7Q96M83 1385 aa14.26□□□□□ -0.13
CDC42SE1-207ENST00000540998 GAPVD1Q14C86 1478 aa14.25□□□□□ -0.13
CDC42SE1-207ENST00000540998 UGGT2Q9NYU1 1516 aa14.25□□□□□ -0.13
CDC42SE1-207ENST00000540998 PPP4R2Q9NY27 417 aa14.24□□□□□ -0.13
CDC42SE1-207ENST00000540998 KIF7Q2M1P5 1343 aa14.24□□□□□ -0.13
CDC42SE1-207ENST00000540998 SAMD9Q5K651 1589 aa14.24□□□□□ -0.13
CDC42SE1-207ENST00000540998 AKNAQ7Z591 1439 aa14.23□□□□□ -0.13
CDC42SE1-207ENST00000540998 FANCIQ9NVI1 1328 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms