RNA–Protein interactions for RNA: ENST00000540998.5

CDC42SE1-207, Transcript of CDC42 small effector 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CDC42SE1, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1-207ENST00000540998 NISCHQ9Y2I1 1504 aa20.56■□□□□ 0.88
CDC42SE1-207ENST00000540998 SHROOM4Q9ULL8 1493 aa18.3■□□□□ 0.52
CDC42SE1-207ENST00000540998 SUPT5HO00267 1087 aaKnown RBP18.03■□□□□ 0.48
CDC42SE1-207ENST00000540998 DCAF8L2P0C7V8 631 aa17.56■□□□□ 0.4
CDC42SE1-207ENST00000540998 MYO15BQ96JP2 1530 aa17.55■□□□□ 0.4
CDC42SE1-207ENST00000540998 CHIC1Q5VXU3 224 aa17.43■□□□□ 0.38
CDC42SE1-207ENST00000540998 ZCCHC6Q5VYS8 1495 aaKnown RBP17.41■□□□□ 0.38
CDC42SE1-207ENST00000540998 PCGF6Q9BYE7 350 aa17.36■□□□□ 0.37
CDC42SE1-207ENST00000540998 HRCP23327 699 aa17.33■□□□□ 0.37
CDC42SE1-207ENST00000540998 PPARGC1BQ86YN6 1023 aaKnown RBP17.3■□□□□ 0.36
CDC42SE1-207ENST00000540998 LOC105371045A0A1W2PR82 267 aa17.17■□□□□ 0.34
CDC42SE1-207ENST00000540998 CCDC180Q9P1Z9 1646 aa17.1■□□□□ 0.33
CDC42SE1-207ENST00000540998 EHMT2Q96KQ7 1210 aa16.84■□□□□ 0.29
CDC42SE1-207ENST00000540998 DCAF1Q9Y4B6 1507 aa16.76■□□□□ 0.27
CDC42SE1-207ENST00000540998 FAM9AQ8IZU1 332 aaPredicted RBP16.75■□□□□ 0.27
CDC42SE1-207ENST00000540998 TRIM26Q12899 539 aaPredicted RBP16.68■□□□□ 0.26
CDC42SE1-207ENST00000540998 TRIM41Q8WV44 630 aa16.56■□□□□ 0.24
CDC42SE1-207ENST00000540998 SCRIBQ14160 1630 aa16.53■□□□□ 0.24
CDC42SE1-207ENST00000540998 RSF1Q96T23 1441 aaPredicted RBP16.49■□□□□ 0.23
CDC42SE1-207ENST00000540998 ABCC9O60706 1549 aa16.49■□□□□ 0.23
CDC42SE1-207ENST00000540998 RB1CC1Q8TDY2 1594 aa16.45■□□□□ 0.22
CDC42SE1-207ENST00000540998 TTBK1Q5TCY1 1321 aaPredicted RBP16.32■□□□□ 0.2
CDC42SE1-207ENST00000540998 SCAF1Q9H7N4 1312 aaKnown RBP16.3■□□□□ 0.2
CDC42SE1-207ENST00000540998 CECR2Q9BXF3 1484 aa16.27■□□□□ 0.2
CDC42SE1-207ENST00000540998 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.26■□□□□ 0.19
CDC42SE1-207ENST00000540998 ZEB1P37275 1124 aaPredicted RBP16.24■□□□□ 0.19
CDC42SE1-207ENST00000540998 MROH2BQ7Z745 1585 aa16.16■□□□□ 0.18
CDC42SE1-207ENST00000540998 CCER1Q8TC90 406 aaPredicted RBP16.1■□□□□ 0.17
CDC42SE1-207ENST00000540998 WIZO95785 1651 aa16.1■□□□□ 0.17
CDC42SE1-207ENST00000540998 NEUROD1Q13562 356 aa16.01■□□□□ 0.15
CDC42SE1-207ENST00000540998 ABCC8Q09428 1581 aa15.95■□□□□ 0.14
CDC42SE1-207ENST00000540998 ACIN1Q9UKV3 1341 aaKnown RBP15.9■□□□□ 0.14
CDC42SE1-207ENST00000540998 DIEXFQ68CQ4 756 aaKnown RBP15.89■□□□□ 0.13
CDC42SE1-207ENST00000540998 CCDC88BA6NC98 1476 aa15.89■□□□□ 0.13
CDC42SE1-207ENST00000540998 GTF3C3Q9Y5Q9 886 aa15.86■□□□□ 0.13
CDC42SE1-207ENST00000540998 SOGA1O94964 1423 aa15.85■□□□□ 0.13
CDC42SE1-207ENST00000540998 NACADO15069 1562 aa15.82■□□□□ 0.12
CDC42SE1-207ENST00000540998 PELP1Q8IZL8 1130 aaKnown RBP15.82■□□□□ 0.12
CDC42SE1-207ENST00000540998 YTHDC1Q96MU7 727 aaKnown RBP15.81■□□□□ 0.12
CDC42SE1-207ENST00000540998 EIF4G1Q04637 1599 aaKnown RBP15.81■□□□□ 0.12
CDC42SE1-207ENST00000540998 BAZ1AQ9NRL2 1556 aaPredicted RBP15.81■□□□□ 0.12
CDC42SE1-207ENST00000540998 RUSC2Q8N2Y8 1516 aa15.81■□□□□ 0.12
CDC42SE1-207ENST00000540998 UBTFP17480 764 aaKnown RBP15.81■□□□□ 0.12
CDC42SE1-207ENST00000540998 CEP162Q5TB80 1403 aa15.8■□□□□ 0.12
CDC42SE1-207ENST00000540998 RANGAP1P46060 587 aaPredicted RBP15.75■□□□□ 0.11
CDC42SE1-207ENST00000540998 HNRNPUL2Q1KMD3 747 aaKnown RBP15.73■□□□□ 0.11
CDC42SE1-207ENST00000540998 PABPN1Q86U42 306 aaKnown RBP eCLIP15.67■□□□□ 0.1
CDC42SE1-207ENST00000540998 CSRNP3Q8WYN3 585 aa15.67■□□□□ 0.1
CDC42SE1-207ENST00000540998 CENPBP07199 599 aaPredicted RBP15.67■□□□□ 0.1
CDC42SE1-207ENST00000540998 SMARCA2P51531 1590 aa15.65■□□□□ 0.1
CDC42SE1-207ENST00000540998 TOP2AP11388 1531 aaKnown RBP15.64■□□□□ 0.09
CDC42SE1-207ENST00000540998 WRNQ14191 1432 aaPredicted RBP eCLIP15.64■□□□□ 0.09
CDC42SE1-207ENST00000540998 ZNF316A6NFI3 1004 aaPredicted RBP15.62■□□□□ 0.09
CDC42SE1-207ENST00000540998 TNIKQ9UKE5 1360 aa15.61■□□□□ 0.09
CDC42SE1-207ENST00000540998 SMARCA4P51532 1647 aa15.61■□□□□ 0.09
CDC42SE1-207ENST00000540998 MIER1Q8N108 512 aa15.61■□□□□ 0.09
CDC42SE1-207ENST00000540998 GOLGA3Q08378 1498 aa15.49■□□□□ 0.07
CDC42SE1-207ENST00000540998 UNC13AQ9UPW8 1703 aa15.49■□□□□ 0.07
CDC42SE1-207ENST00000540998 CLIP1P30622 1438 aa15.43■□□□□ 0.06
CDC42SE1-207ENST00000540998 SYNJ1O43426 1573 aa15.43■□□□□ 0.06
CDC42SE1-207ENST00000540998 EEA1Q15075 1411 aa15.39■□□□□ 0.05
CDC42SE1-207ENST00000540998 RAPGEF2Q9Y4G8 1499 aa15.39■□□□□ 0.05
CDC42SE1-207ENST00000540998 APLP2Q06481 763 aa15.38■□□□□ 0.05
CDC42SE1-207ENST00000540998 CEP164Q9UPV0 1460 aa15.34■□□□□ 0.05
CDC42SE1-207ENST00000540998 VPS8Q8N3P4 1428 aa15.32■□□□□ 0.04
CDC42SE1-207ENST00000540998 KANK4Q5T7N3 995 aaPredicted RBP15.3■□□□□ 0.04
CDC42SE1-207ENST00000540998 ITGAEP38570 1179 aa15.3■□□□□ 0.04
CDC42SE1-207ENST00000540998 BICRAQ9NZM4 1560 aa15.28■□□□□ 0.04
CDC42SE1-207ENST00000540998 KIF21BO75037 1637 aa15.25■□□□□ 0.03
CDC42SE1-207ENST00000540998 DHX57Q6P158 1386 aaKnown RBP15.21■□□□□ 0.03
CDC42SE1-207ENST00000540998 KCNH8Q96L42 1107 aa15.2■□□□□ 0.02
CDC42SE1-207ENST00000540998 ATAD2BQ9ULI0 1458 aa15.18■□□□□ 0.02
CDC42SE1-207ENST00000540998 BAZ1BQ9UIG0 1483 aaKnown RBP15.18■□□□□ 0.02
CDC42SE1-207ENST00000540998 SUPT16HQ9Y5B9 1047 aaKnown RBP15.14■□□□□ 0.01
CDC42SE1-207ENST00000540998 ARAP1Q96P48 1450 aa15.13■□□□□ 0.01
CDC42SE1-207ENST00000540998 PEG3Q9GZU2 1588 aa15.1■□□□□ 0.01
CDC42SE1-207ENST00000540998 BCANQ96GW7 911 aa15.09■□□□□ 0.01
CDC42SE1-207ENST00000540998 HIRIP3Q9BW71 556 aaPredicted RBP15.06■□□□□ 0
CDC42SE1-207ENST00000540998 TOP2BQ02880 1626 aa15.05■□□□□ 0
CDC42SE1-207ENST00000540998 PRXQ9BXM0 1461 aa15.02■□□□□ -0
CDC42SE1-207ENST00000540998 SIN3AQ96ST3 1273 aa15□□□□□ -0.01
CDC42SE1-207ENST00000540998 P3H3Q8IVL6 736 aa14.99□□□□□ -0.01
CDC42SE1-207ENST00000540998 ATP1B4Q9UN42 357 aaPredicted RBP14.99□□□□□ -0.01
CDC42SE1-207ENST00000540998 CCNB3Q8WWL7 1395 aa14.98□□□□□ -0.01
CDC42SE1-207ENST00000540998 CUX1P39880 1505 aa14.98□□□□□ -0.01
CDC42SE1-207ENST00000540998 DDX10Q13206 875 aaKnown RBP14.97□□□□□ -0.01
CDC42SE1-207ENST00000540998 TSHZ2Q9NRE2 1034 aa14.97□□□□□ -0.01
CDC42SE1-207ENST00000540998 RAB3GAP2Q9H2M9 1393 aa14.96□□□□□ -0.01
CDC42SE1-207ENST00000540998 ARHGAP35Q9NRY4 1499 aa14.96□□□□□ -0.01
CDC42SE1-207ENST00000540998 RRBP1Q9P2E9 1410 aaKnown RBP14.95□□□□□ -0.02
CDC42SE1-207ENST00000540998 CLSPNQ9HAW4 1339 aa14.95□□□□□ -0.02
CDC42SE1-207ENST00000540998 FAM50AQ14320 339 aaKnown RBP14.95□□□□□ -0.02
CDC42SE1-207ENST00000540998 MYT1Q01538 1121 aa14.94□□□□□ -0.02
CDC42SE1-207ENST00000540998 BIVM-ERCC5R4GMW8 1640 aa14.93□□□□□ -0.02
CDC42SE1-207ENST00000540998 ERICH3Q5RHP9 1530 aa14.92□□□□□ -0.02
CDC42SE1-207ENST00000540998 KIF27Q86VH2 1401 aa14.91□□□□□ -0.02
CDC42SE1-207ENST00000540998 MAPKBP1O60336 1514 aa14.89□□□□□ -0.03
CDC42SE1-207ENST00000540998 FKBP8Q14318 412 aa14.88□□□□□ -0.03
CDC42SE1-207ENST00000540998 TRIM52Q96A61 297 aa14.88□□□□□ -0.03
CDC42SE1-207ENST00000540998 WDR97A6NE52 1622 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 1574.6 ms