RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 CUX2O14529 1486 aa15.9■□□□□ 0.14
SYNE1-237ENST00000539504 BIVM-ERCC5R4GMW8 1640 aa15.88■□□□□ 0.13
SYNE1-237ENST00000539504 CUX1P39880 1505 aa15.88■□□□□ 0.13
SYNE1-237ENST00000539504 MAPKBP1O60336 1514 aa15.85■□□□□ 0.13
SYNE1-237ENST00000539504 PPP1R15AO75807 674 aaPredicted RBP15.83■□□□□ 0.12
SYNE1-237ENST00000539504 PHLDB1Q86UU1 1377 aa15.83■□□□□ 0.12
SYNE1-237ENST00000539504 RBM19Q9Y4C8 960 aaKnown RBP15.83■□□□□ 0.12
SYNE1-237ENST00000539504 WDR97A6NE52 1622 aa15.82■□□□□ 0.12
SYNE1-237ENST00000539504 CARMIL1Q5VZK9 1371 aa15.79■□□□□ 0.12
SYNE1-237ENST00000539504 IGF1RP08069 1367 aa15.79■□□□□ 0.12
SYNE1-237ENST00000539504 CCER2I3L3R5 266 aa15.79■□□□□ 0.12
SYNE1-237ENST00000539504 TONSLQ96HA7 1378 aa15.78■□□□□ 0.12
SYNE1-237ENST00000539504 TIMELESSQ9UNS1 1208 aa15.77■□□□□ 0.11
SYNE1-237ENST00000539504 LRRC9Q6ZRR7 1453 aa15.77■□□□□ 0.11
SYNE1-237ENST00000539504 TIAM1Q13009 1591 aa15.76■□□□□ 0.11
SYNE1-237ENST00000539504 IRX6P78412 446 aaPredicted RBP15.74■□□□□ 0.11
SYNE1-237ENST00000539504 HNRNPUQ00839 825 aaKnown RBP eCLIP15.74■□□□□ 0.11
SYNE1-237ENST00000539504 BCL11AQ9H165 835 aa15.73■□□□□ 0.11
SYNE1-237ENST00000539504 FHAD1B1AJZ9 1412 aa15.72■□□□□ 0.11
SYNE1-237ENST00000539504 NCAPD3P42695 1498 aa15.72■□□□□ 0.11
SYNE1-237ENST00000539504 CFTRP13569 1480 aa15.71■□□□□ 0.11
SYNE1-237ENST00000539504 ERICH6Q7L0X2 663 aa15.71■□□□□ 0.11
SYNE1-237ENST00000539504 FHOD3Q2V2M9 1422 aa15.67■□□□□ 0.1
SYNE1-237ENST00000539504 CDK11AQ9UQ88 783 aaPredicted RBP15.67■□□□□ 0.1
SYNE1-237ENST00000539504 MAP3K1Q13233 1512 aa15.67■□□□□ 0.1
SYNE1-237ENST00000539504 HMGXB3Q12766 1538 aa15.65■□□□□ 0.1
SYNE1-237ENST00000539504 MTUS2Q5JR59 1369 aa15.62■□□□□ 0.09
SYNE1-237ENST00000539504 FGD5Q6ZNL6 1462 aa15.61■□□□□ 0.09
SYNE1-237ENST00000539504 PCF11O94913 1555 aaKnown RBP15.59■□□□□ 0.09
SYNE1-237ENST00000539504 MSH5O43196 834 aa15.57■□□□□ 0.08
SYNE1-237ENST00000539504 CHIC2Q9UKJ5 165 aa15.57■□□□□ 0.08
SYNE1-237ENST00000539504 CCDC18Q5T9S5 1454 aa15.57■□□□□ 0.08
SYNE1-237ENST00000539504 CADPSQ9ULU8 1353 aa15.57■□□□□ 0.08
SYNE1-237ENST00000539504 RRP7BPQ9NSQ0 103 aa15.56■□□□□ 0.08
SYNE1-237ENST00000539504 FGD6Q6ZV73 1430 aa15.55■□□□□ 0.08
SYNE1-237ENST00000539504 FAM9BQ8IZU0 186 aa15.55■□□□□ 0.08
SYNE1-237ENST00000539504 HSPA5P11021 654 aaKnown RBP15.55■□□□□ 0.08
SYNE1-237ENST00000539504 CNGB1Q14028 1251 aaPredicted RBP15.52■□□□□ 0.08
SYNE1-237ENST00000539504 CASKIN1Q8WXD9 1431 aa15.52■□□□□ 0.07
SYNE1-237ENST00000539504 UACAQ9BZF9 1416 aa15.52■□□□□ 0.07
SYNE1-237ENST00000539504 EIF4G2P78344 907 aaKnown RBP eCLIP15.51■□□□□ 0.07
SYNE1-237ENST00000539504 FYCO1Q9BQS8 1478 aa15.51■□□□□ 0.07
SYNE1-237ENST00000539504 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.51■□□□□ 0.07
SYNE1-237ENST00000539504 WASHC2AQ641Q2 1341 aa15.5■□□□□ 0.07
SYNE1-237ENST00000539504 RAD54L2Q9Y4B4 1467 aa15.49■□□□□ 0.07
SYNE1-237ENST00000539504 MRS2Q9HD23 443 aa15.49■□□□□ 0.07
SYNE1-237ENST00000539504 PPP4R2Q9NY27 417 aa15.49■□□□□ 0.07
SYNE1-237ENST00000539504 PTPRKQ15262 1439 aa15.48■□□□□ 0.07
SYNE1-237ENST00000539504 CFAP43Q8NDM7 1665 aa15.48■□□□□ 0.07
SYNE1-237ENST00000539504 FANCIQ9NVI1 1328 aa15.48■□□□□ 0.07
SYNE1-237ENST00000539504 FMN1Q68DA7 1419 aa15.48■□□□□ 0.07
SYNE1-237ENST00000539504 HFM1A2PYH4 1435 aa15.48■□□□□ 0.07
SYNE1-237ENST00000539504 B4GALNT3Q6L9W6 998 aa15.47■□□□□ 0.07
SYNE1-237ENST00000539504 CCDC184Q52MB2 194 aa15.47■□□□□ 0.07
SYNE1-237ENST00000539504 ARID3CA6NKF2 412 aa15.45■□□□□ 0.06
SYNE1-237ENST00000539504 NAIPQ13075 1403 aa15.44■□□□□ 0.06
SYNE1-237ENST00000539504 FOXD1Q16676 465 aa15.44■□□□□ 0.06
SYNE1-237ENST00000539504 POLR3GLQ9BT43 218 aa15.44■□□□□ 0.06
SYNE1-237ENST00000539504 AQRO60306 1485 aaKnown RBP eCLIP15.42■□□□□ 0.06
SYNE1-237ENST00000539504 FANCD2Q9BXW9 1451 aa15.42■□□□□ 0.06
SYNE1-237ENST00000539504 EFCAB5A4FU69 1503 aa15.42■□□□□ 0.06
SYNE1-237ENST00000539504 L3MBTL2Q969R5 705 aa15.41■□□□□ 0.06
SYNE1-237ENST00000539504 MYOM3Q5VTT5 1437 aa15.41■□□□□ 0.06
SYNE1-237ENST00000539504 ERICH6BQ5W0A0 696 aa15.4■□□□□ 0.06
SYNE1-237ENST00000539504 NCOA2Q15596 1464 aa15.4■□□□□ 0.06
SYNE1-237ENST00000539504 PRKRIP1Q9H875 184 aaPredicted RBP15.4■□□□□ 0.06
SYNE1-237ENST00000539504 PTPN23Q9H3S7 1636 aa15.4■□□□□ 0.06
SYNE1-237ENST00000539504 MPHOSPH9Q99550 1183 aa15.38■□□□□ 0.05
SYNE1-237ENST00000539504 C11orf95C9JLR9 678 aaPredicted RBP15.37■□□□□ 0.05
SYNE1-237ENST00000539504 SENP3-EIF4A1A0A087X0R7 540 aa15.36■□□□□ 0.05
SYNE1-237ENST00000539504 CNTLNQ9NXG0 1405 aa15.36■□□□□ 0.05
SYNE1-237ENST00000539504 TDRD9Q8NDG6 1382 aaKnown RBP15.36■□□□□ 0.05
SYNE1-237ENST00000539504 POLA1P09884 1462 aaPredicted RBP15.35■□□□□ 0.05
SYNE1-237ENST00000539504 NBR1Q14596 966 aa15.33■□□□□ 0.05
SYNE1-237ENST00000539504 ABCA10Q8WWZ4 1543 aa15.33■□□□□ 0.05
SYNE1-237ENST00000539504 ZNF326Q5BKZ1 582 aaKnown RBP15.33■□□□□ 0.04
SYNE1-237ENST00000539504 CCDC7Q96M83 1385 aa15.33■□□□□ 0.04
SYNE1-237ENST00000539504 ZBED9Q6R2W3 1325 aa15.33■□□□□ 0.04
SYNE1-237ENST00000539504 SNAPC4Q5SXM2 1469 aa15.32■□□□□ 0.04
SYNE1-237ENST00000539504 PRDM2Q13029 1718 aa15.31■□□□□ 0.04
SYNE1-237ENST00000539504 TOPBP1Q92547 1522 aa15.3■□□□□ 0.04
SYNE1-237ENST00000539504 DEKP35659 375 aaKnown RBP15.29■□□□□ 0.04
SYNE1-237ENST00000539504 CCDC136Q96JN2 1154 aa15.29■□□□□ 0.04
SYNE1-237ENST00000539504 SLC4A1APQ9BWU0 796 aaKnown RBP15.29■□□□□ 0.04
SYNE1-237ENST00000539504 NBPF8Q3BBV2 869 aa15.29■□□□□ 0.04
SYNE1-237ENST00000539504 NOP58Q9Y2X3 529 aaKnown RBP15.29■□□□□ 0.04
SYNE1-237ENST00000539504 MYT1LQ9UL68 1186 aa15.28■□□□□ 0.04
SYNE1-237ENST00000539504 KDM5BQ9UGL1 1544 aa15.28■□□□□ 0.04
SYNE1-237ENST00000539504 DNMBPQ6XZF7 1577 aa15.28■□□□□ 0.04
SYNE1-237ENST00000539504 KIF7Q2M1P5 1343 aa15.27■□□□□ 0.04
SYNE1-237ENST00000539504 NESP48681 1621 aa15.25■□□□□ 0.03
SYNE1-237ENST00000539504 EHBP1L1Q8N3D4 1523 aa15.25■□□□□ 0.03
SYNE1-237ENST00000539504 SUPT6HQ7KZ85 1726 aaKnown RBP15.25■□□□□ 0.03
SYNE1-237ENST00000539504 NCOA1Q15788 1441 aa15.25■□□□□ 0.03
SYNE1-237ENST00000539504 ANP32AP39687 249 aaKnown RBP15.24■□□□□ 0.03
SYNE1-237ENST00000539504 CUL7Q14999 1698 aa15.24■□□□□ 0.03
SYNE1-237ENST00000539504 GRIN2BQ13224 1484 aa15.24■□□□□ 0.03
SYNE1-237ENST00000539504 CC2D2AQ9P2K1 1620 aa15.24■□□□□ 0.03
SYNE1-237ENST00000539504 CTTNBP2Q8WZ74 1663 aa15.23■□□□□ 0.03
SYNE1-237ENST00000539504 PAK3O75914 559 aaPredicted RBP15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms