RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 NISCHQ9Y2I1 1504 aa21.9■■□□□ 1.1
SYNE1-237ENST00000539504 SHROOM4Q9ULL8 1493 aa19.4■□□□□ 0.7
SYNE1-237ENST00000539504 SUPT5HO00267 1087 aaKnown RBP19.24■□□□□ 0.67
SYNE1-237ENST00000539504 DCAF8L2P0C7V8 631 aa18.71■□□□□ 0.59
SYNE1-237ENST00000539504 HRCP23327 699 aa18.7■□□□□ 0.58
SYNE1-237ENST00000539504 CHIC1Q5VXU3 224 aa18.65■□□□□ 0.58
SYNE1-237ENST00000539504 PCGF6Q9BYE7 350 aa18.63■□□□□ 0.57
SYNE1-237ENST00000539504 MYO15BQ96JP2 1530 aa18.55■□□□□ 0.56
SYNE1-237ENST00000539504 ZCCHC6Q5VYS8 1495 aaKnown RBP18.54■□□□□ 0.56
SYNE1-237ENST00000539504 PPARGC1BQ86YN6 1023 aaKnown RBP18.4■□□□□ 0.54
SYNE1-237ENST00000539504 LOC105371045A0A1W2PR82 267 aa18.26■□□□□ 0.51
SYNE1-237ENST00000539504 CCDC180Q9P1Z9 1646 aa18.22■□□□□ 0.51
SYNE1-237ENST00000539504 DCAF1Q9Y4B6 1507 aa18.07■□□□□ 0.48
SYNE1-237ENST00000539504 TRIM26Q12899 539 aaPredicted RBP18.04■□□□□ 0.48
SYNE1-237ENST00000539504 FAM9AQ8IZU1 332 aaPredicted RBP17.84■□□□□ 0.45
SYNE1-237ENST00000539504 EHMT2Q96KQ7 1210 aa17.83■□□□□ 0.44
SYNE1-237ENST00000539504 TRIM41Q8WV44 630 aa17.8■□□□□ 0.44
SYNE1-237ENST00000539504 ZEB1P37275 1124 aaPredicted RBP17.79■□□□□ 0.44
SYNE1-237ENST00000539504 RSF1Q96T23 1441 aaPredicted RBP17.56■□□□□ 0.4
SYNE1-237ENST00000539504 PELP1Q8IZL8 1130 aaKnown RBP17.53■□□□□ 0.4
SYNE1-237ENST00000539504 ABCC9O60706 1549 aa17.53■□□□□ 0.4
SYNE1-237ENST00000539504 SCAF1Q9H7N4 1312 aaKnown RBP17.49■□□□□ 0.39
SYNE1-237ENST00000539504 SCRIBQ14160 1630 aa17.47■□□□□ 0.39
SYNE1-237ENST00000539504 CCER1Q8TC90 406 aaPredicted RBP17.39■□□□□ 0.37
SYNE1-237ENST00000539504 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.38■□□□□ 0.37
SYNE1-237ENST00000539504 RB1CC1Q8TDY2 1594 aa17.38■□□□□ 0.37
SYNE1-237ENST00000539504 TTBK1Q5TCY1 1321 aaPredicted RBP17.32■□□□□ 0.36
SYNE1-237ENST00000539504 ACIN1Q9UKV3 1341 aaKnown RBP17.21■□□□□ 0.35
SYNE1-237ENST00000539504 CECR2Q9BXF3 1484 aa17.19■□□□□ 0.34
SYNE1-237ENST00000539504 NEUROD1Q13562 356 aa17.18■□□□□ 0.34
SYNE1-237ENST00000539504 DIEXFQ68CQ4 756 aaKnown RBP17.17■□□□□ 0.34
SYNE1-237ENST00000539504 CENPBP07199 599 aaPredicted RBP17.15■□□□□ 0.34
SYNE1-237ENST00000539504 MROH2BQ7Z745 1585 aa17.11■□□□□ 0.33
SYNE1-237ENST00000539504 GTF3C3Q9Y5Q9 886 aa17.11■□□□□ 0.33
SYNE1-237ENST00000539504 WIZO95785 1651 aa17■□□□□ 0.31
SYNE1-237ENST00000539504 UBTFP17480 764 aaKnown RBP17■□□□□ 0.31
SYNE1-237ENST00000539504 YTHDC1Q96MU7 727 aaKnown RBP16.97■□□□□ 0.31
SYNE1-237ENST00000539504 NACADO15069 1562 aa16.91■□□□□ 0.3
SYNE1-237ENST00000539504 CEP162Q5TB80 1403 aa16.9■□□□□ 0.3
SYNE1-237ENST00000539504 ZNF316A6NFI3 1004 aaPredicted RBP16.9■□□□□ 0.3
SYNE1-237ENST00000539504 CCDC88BA6NC98 1476 aa16.86■□□□□ 0.29
SYNE1-237ENST00000539504 ABCC8Q09428 1581 aa16.85■□□□□ 0.29
SYNE1-237ENST00000539504 HNRNPUL2Q1KMD3 747 aaKnown RBP16.85■□□□□ 0.29
SYNE1-237ENST00000539504 CSRNP3Q8WYN3 585 aa16.84■□□□□ 0.29
SYNE1-237ENST00000539504 SOGA1O94964 1423 aa16.82■□□□□ 0.28
SYNE1-237ENST00000539504 BAZ1AQ9NRL2 1556 aaPredicted RBP16.82■□□□□ 0.28
SYNE1-237ENST00000539504 WRNQ14191 1432 aaPredicted RBP eCLIP16.82■□□□□ 0.28
SYNE1-237ENST00000539504 TNIKQ9UKE5 1360 aa16.8■□□□□ 0.28
SYNE1-237ENST00000539504 RANGAP1P46060 587 aaPredicted RBP16.74■□□□□ 0.27
SYNE1-237ENST00000539504 MYT1Q01538 1121 aa16.74■□□□□ 0.27
SYNE1-237ENST00000539504 MIER1Q8N108 512 aa16.74■□□□□ 0.27
SYNE1-237ENST00000539504 APLP2Q06481 763 aa16.72■□□□□ 0.27
SYNE1-237ENST00000539504 EIF4G1Q04637 1599 aaKnown RBP16.7■□□□□ 0.26
SYNE1-237ENST00000539504 RUSC2Q8N2Y8 1516 aa16.69■□□□□ 0.26
SYNE1-237ENST00000539504 TOP2AP11388 1531 aaKnown RBP16.68■□□□□ 0.26
SYNE1-237ENST00000539504 EEA1Q15075 1411 aa16.66■□□□□ 0.26
SYNE1-237ENST00000539504 GOLGA3Q08378 1498 aa16.64■□□□□ 0.25
SYNE1-237ENST00000539504 SMARCA2P51531 1590 aa16.6■□□□□ 0.25
SYNE1-237ENST00000539504 SMARCA4P51532 1647 aa16.56■□□□□ 0.24
SYNE1-237ENST00000539504 PABPN1Q86U42 306 aaKnown RBP eCLIP16.56■□□□□ 0.24
SYNE1-237ENST00000539504 CLIP1P30622 1438 aa16.55■□□□□ 0.24
SYNE1-237ENST00000539504 CEP164Q9UPV0 1460 aa16.49■□□□□ 0.23
SYNE1-237ENST00000539504 VPS8Q8N3P4 1428 aa16.44■□□□□ 0.22
SYNE1-237ENST00000539504 RAPGEF2Q9Y4G8 1499 aa16.36■□□□□ 0.21
SYNE1-237ENST00000539504 ITGAEP38570 1179 aa16.35■□□□□ 0.21
SYNE1-237ENST00000539504 SYNJ1O43426 1573 aa16.32■□□□□ 0.2
SYNE1-237ENST00000539504 SUPT16HQ9Y5B9 1047 aaKnown RBP16.31■□□□□ 0.2
SYNE1-237ENST00000539504 KIF21BO75037 1637 aa16.3■□□□□ 0.2
SYNE1-237ENST00000539504 DHX57Q6P158 1386 aaKnown RBP16.29■□□□□ 0.2
SYNE1-237ENST00000539504 CLSPNQ9HAW4 1339 aa16.28■□□□□ 0.2
SYNE1-237ENST00000539504 KANK4Q5T7N3 995 aaPredicted RBP16.27■□□□□ 0.2
SYNE1-237ENST00000539504 BAZ1BQ9UIG0 1483 aaKnown RBP16.27■□□□□ 0.19
SYNE1-237ENST00000539504 UNC13AQ9UPW8 1703 aa16.19■□□□□ 0.18
SYNE1-237ENST00000539504 BCANQ96GW7 911 aa16.18■□□□□ 0.18
SYNE1-237ENST00000539504 ATAD2BQ9ULI0 1458 aa16.15■□□□□ 0.18
SYNE1-237ENST00000539504 KCNH8Q96L42 1107 aa16.14■□□□□ 0.17
SYNE1-237ENST00000539504 TSHZ2Q9NRE2 1034 aa16.13■□□□□ 0.17
SYNE1-237ENST00000539504 CCNB3Q8WWL7 1395 aa16.1■□□□□ 0.17
SYNE1-237ENST00000539504 ARAP1Q96P48 1450 aa16.1■□□□□ 0.17
SYNE1-237ENST00000539504 BICRAQ9NZM4 1560 aa16.09■□□□□ 0.17
SYNE1-237ENST00000539504 DDX10Q13206 875 aaKnown RBP16.08■□□□□ 0.17
SYNE1-237ENST00000539504 PEG3Q9GZU2 1588 aa16.08■□□□□ 0.16
SYNE1-237ENST00000539504 FKBP8Q14318 412 aa16.06■□□□□ 0.16
SYNE1-237ENST00000539504 ATP1B4Q9UN42 357 aaPredicted RBP16.06■□□□□ 0.16
SYNE1-237ENST00000539504 FAM50AQ14320 339 aaKnown RBP16.04■□□□□ 0.16
SYNE1-237ENST00000539504 PRXQ9BXM0 1461 aa16.04■□□□□ 0.16
SYNE1-237ENST00000539504 RRBP1Q9P2E9 1410 aaKnown RBP16.04■□□□□ 0.16
SYNE1-237ENST00000539504 NEFLP07196 543 aa16.03■□□□□ 0.16
SYNE1-237ENST00000539504 TOP2BQ02880 1626 aa16.02■□□□□ 0.16
SYNE1-237ENST00000539504 RAB3GAP2Q9H2M9 1393 aa16.02■□□□□ 0.15
SYNE1-237ENST00000539504 KIF27Q86VH2 1401 aa16.02■□□□□ 0.15
SYNE1-237ENST00000539504 ANP32EQ9BTT0 268 aa16.01■□□□□ 0.15
SYNE1-237ENST00000539504 SIN3AQ96ST3 1273 aa16.01■□□□□ 0.15
SYNE1-237ENST00000539504 HIRIP3Q9BW71 556 aaPredicted RBP16■□□□□ 0.15
SYNE1-237ENST00000539504 ERICH3Q5RHP9 1530 aa16■□□□□ 0.15
SYNE1-237ENST00000539504 TRIM52Q96A61 297 aa15.96■□□□□ 0.15
SYNE1-237ENST00000539504 P3H3Q8IVL6 736 aa15.95■□□□□ 0.14
SYNE1-237ENST00000539504 ARHGAP35Q9NRY4 1499 aa15.93■□□□□ 0.14
SYNE1-237ENST00000539504 ANP32CO43423 234 aa15.92■□□□□ 0.14
SYNE1-237ENST00000539504 SETD5Q9C0A6 1442 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms