RNA–Protein interactions for RNA: ENST00000538886.5

GGA3-202, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 1 (best) BASIC

Gene GGA3, Length 3,766 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-202ENST00000538886 ABCA10Q8WWZ4 1543 aa13.44□□□□□ -0.26
GGA3-202ENST00000538886 THOC2Q8NI27 1593 aaKnown RBP13.43□□□□□ -0.26
GGA3-202ENST00000538886 CDK11AQ9UQ88 783 aaPredicted RBP13.42□□□□□ -0.26
GGA3-202ENST00000538886 CARMIL2Q6F5E8 1435 aa13.41□□□□□ -0.26
GGA3-202ENST00000538886 GOLGA3Q08378 1498 aa13.41□□□□□ -0.26
GGA3-202ENST00000538886 DNAJC5Q9H3Z4 198 aa13.41□□□□□ -0.26
GGA3-202ENST00000538886 PLEKHD1A6NEE1 506 aa13.4□□□□□ -0.26
GGA3-202ENST00000538886 CLIP1P30622 1438 aa13.4□□□□□ -0.26
GGA3-202ENST00000538886 PRG4Q92954 1404 aaPredicted RBP13.4□□□□□ -0.26
GGA3-202ENST00000538886 FAM50AQ14320 339 aaKnown RBP13.39□□□□□ -0.27
GGA3-202ENST00000538886 PTPRGP23470 1445 aa13.39□□□□□ -0.27
GGA3-202ENST00000538886 HRCP23327 699 aa13.38□□□□□ -0.27
GGA3-202ENST00000538886 SYNJ2O15056 1496 aa13.38□□□□□ -0.27
GGA3-202ENST00000538886 EIF4G3O43432 1585 aaKnown RBP13.36□□□□□ -0.27
GGA3-202ENST00000538886 FHOD3Q2V2M9 1422 aa13.35□□□□□ -0.27
GGA3-202ENST00000538886 MAGI1Q96QZ7 1491 aaPredicted RBP13.33□□□□□ -0.27
GGA3-202ENST00000538886 FAM69CQ0P6D2 419 aa13.33□□□□□ -0.28
GGA3-202ENST00000538886 GRIN2AQ12879 1464 aa13.33□□□□□ -0.28
GGA3-202ENST00000538886 CEP162Q5TB80 1403 aa13.31□□□□□ -0.28
GGA3-202ENST00000538886 MTUS2Q5JR59 1369 aa13.28□□□□□ -0.28
GGA3-202ENST00000538886 TNIKQ9UKE5 1360 aa13.27□□□□□ -0.29
GGA3-202ENST00000538886 BIVM-ERCC5R4GMW8 1640 aa13.26□□□□□ -0.29
GGA3-202ENST00000538886 TARBP1Q13395 1621 aaKnown RBP13.25□□□□□ -0.29
GGA3-202ENST00000538886 PRDM2Q13029 1718 aa13.24□□□□□ -0.29
GGA3-202ENST00000538886 PCGF6Q9BYE7 350 aa13.24□□□□□ -0.29
GGA3-202ENST00000538886 ERICH3Q5RHP9 1530 aa13.24□□□□□ -0.29
GGA3-202ENST00000538886 ARID4BQ4LE39 1312 aaPredicted RBP13.23□□□□□ -0.29
GGA3-202ENST00000538886 CHIC2Q9UKJ5 165 aa13.23□□□□□ -0.29
GGA3-202ENST00000538886 KIAA0586Q9BVV6 1533 aa13.21□□□□□ -0.29
GGA3-202ENST00000538886 PRXQ9BXM0 1461 aa13.21□□□□□ -0.3
GGA3-202ENST00000538886 CFDP1Q9UEE9 299 aaPredicted RBP13.19□□□□□ -0.3
GGA3-202ENST00000538886 MLECQ14165 292 aa13.19□□□□□ -0.3
GGA3-202ENST00000538886 KANK4Q5T7N3 995 aaPredicted RBP13.15□□□□□ -0.3
GGA3-202ENST00000538886 ESF1Q9H501 851 aaKnown RBP13.14□□□□□ -0.31
GGA3-202ENST00000538886 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.12□□□□□ -0.312e-7■■■□□ 16.1
GGA3-202ENST00000538886 ADAMTS12P58397 1594 aa13.12□□□□□ -0.31
GGA3-202ENST00000538886 FMN1Q68DA7 1419 aa13.12□□□□□ -0.31
GGA3-202ENST00000538886 PLB1Q6P1J6 1458 aa13.11□□□□□ -0.31
GGA3-202ENST00000538886 TSPY4P0CV99 314 aa13.11□□□□□ -0.31
GGA3-202ENST00000538886 TSPY10P0CW01 314 aa13.11□□□□□ -0.31
GGA3-202ENST00000538886 TRIM52Q96A61 297 aa13.11□□□□□ -0.31
GGA3-202ENST00000538886 ABCA5Q8WWZ7 1642 aa13.11□□□□□ -0.31
GGA3-202ENST00000538886 IQGAP2Q13576 1575 aa13.1□□□□□ -0.31
GGA3-202ENST00000538886 PBRM1Q86U86 1689 aa13.09□□□□□ -0.31
GGA3-202ENST00000538886 SENP3Q9H4L4 574 aaPredicted RBP13.08□□□□□ -0.32
GGA3-202ENST00000538886 NUP160Q12769 1436 aa13.08□□□□□ -0.32
GGA3-202ENST00000538886 CUL7Q14999 1698 aa13.08□□□□□ -0.32
GGA3-202ENST00000538886 ARHGEF11O15085 1522 aa13.07□□□□□ -0.32
GGA3-202ENST00000538886 CHD1O14646 1710 aa13.07□□□□□ -0.32
GGA3-202ENST00000538886 UACAQ9BZF9 1416 aa13.07□□□□□ -0.32
GGA3-202ENST00000538886 HNRNPMP52272 730 aaKnown RBP eCLIP13.06□□□□□ -0.32
GGA3-202ENST00000538886 CCNB3Q8WWL7 1395 aa13.06□□□□□ -0.32
GGA3-202ENST00000538886 EFCAB2Q5VUJ9 269 aa13.05□□□□□ -0.32
GGA3-202ENST00000538886 CEP170Q5SW79 1584 aa13.05□□□□□ -0.32
GGA3-202ENST00000538886 RRP7BPQ9NSQ0 103 aa13.05□□□□□ -0.32
GGA3-202ENST00000538886 ARHGAP35Q9NRY4 1499 aa13.03□□□□□ -0.32
GGA3-202ENST00000538886 RAPGEF3O95398 923 aa13.03□□□□□ -0.32
GGA3-202ENST00000538886 ARAP1Q96P48 1450 aa13.02□□□□□ -0.33
GGA3-202ENST00000538886 ERCC6L2Q5T890 1561 aa13.01□□□□□ -0.33
GGA3-202ENST00000538886 SCAF1Q9H7N4 1312 aaKnown RBP13.01□□□□□ -0.33
GGA3-202ENST00000538886 GGT6Q6P531 493 aa13□□□□□ -0.33
GGA3-202ENST00000538886 VPS8Q8N3P4 1428 aa13□□□□□ -0.33
GGA3-202ENST00000538886 ZNF644Q9H582 1327 aaPredicted RBP12.99□□□□□ -0.33
GGA3-202ENST00000538886 AFAP1Q8N556 730 aa12.98□□□□□ -0.33
GGA3-202ENST00000538886 KIF21BO75037 1637 aa12.98□□□□□ -0.33
GGA3-202ENST00000538886 CHGAP10645 457 aaKnown RBP12.96□□□□□ -0.33
GGA3-202ENST00000538886 BCANQ96GW7 911 aa12.95□□□□□ -0.34
GGA3-202ENST00000538886 AEBP2Q6ZN18 517 aaPredicted RBP12.95□□□□□ -0.34
GGA3-202ENST00000538886 TRIM26Q12899 539 aaPredicted RBP12.94□□□□□ -0.34
GGA3-202ENST00000538886 CCER1Q8TC90 406 aaPredicted RBP12.94□□□□□ -0.34
GGA3-202ENST00000538886 CDK13Q14004 1512 aaKnown RBP12.94□□□□□ -0.34
GGA3-202ENST00000538886 ASXL2Q76L83 1435 aa12.93□□□□□ -0.34
GGA3-202ENST00000538886 DISP1Q96F81 1524 aa12.92□□□□□ -0.34
GGA3-202ENST00000538886 STAG3Q9UJ98 1225 aa12.92□□□□□ -0.34
GGA3-202ENST00000538886 WDR97A6NE52 1622 aa12.91□□□□□ -0.34
GGA3-202ENST00000538886 CD109Q6YHK3 1445 aa12.9□□□□□ -0.34
GGA3-202ENST00000538886 SPAG9O60271 1321 aaKnown RBP12.9□□□□□ -0.34
GGA3-202ENST00000538886 CCDC18Q5T9S5 1454 aa12.88□□□□□ -0.35
GGA3-202ENST00000538886 KIF3BO15066 747 aa12.88□□□□□ -0.35
GGA3-202ENST00000538886 RIMBP3CA6NJZ7 1639 aa12.87□□□□□ -0.35
GGA3-202ENST00000538886 RIMBP3BA6NNM3 1639 aa12.87□□□□□ -0.35
GGA3-202ENST00000538886 RIMBP3Q9UFD9 1639 aa12.87□□□□□ -0.35
GGA3-202ENST00000538886 ATP10BO94823 1461 aa12.87□□□□□ -0.35
GGA3-202ENST00000538886 NEUROD1Q13562 356 aa12.86□□□□□ -0.35
GGA3-202ENST00000538886 CASKIN1Q8WXD9 1431 aa12.86□□□□□ -0.35
GGA3-202ENST00000538886 UGGT2Q9NYU1 1516 aa12.85□□□□□ -0.35
GGA3-202ENST00000538886 KIAA0556O60303 1618 aa12.85□□□□□ -0.35
GGA3-202ENST00000538886 ZNF326Q5BKZ1 582 aaKnown RBP12.84□□□□□ -0.35
GGA3-202ENST00000538886 EFCAB5A4FU69 1503 aa12.84□□□□□ -0.35
GGA3-202ENST00000538886 EPRSP07814 1512 aaKnown RBP12.84□□□□□ -0.35
GGA3-202ENST00000538886 ABCC2Q92887 1545 aa12.82□□□□□ -0.36
GGA3-202ENST00000538886 NUP153P49790 1475 aaKnown RBP12.81□□□□□ -0.36
GGA3-202ENST00000538886 CLASP1Q7Z460 1538 aa12.8□□□□□ -0.36
GGA3-202ENST00000538886 TROQ12816 1431 aaPredicted RBP12.8□□□□□ -0.36
GGA3-202ENST00000538886 ARHGAP5Q13017 1502 aa12.8□□□□□ -0.36
GGA3-202ENST00000538886 SCAPERQ9BY12 1400 aa12.8□□□□□ -0.36
GGA3-202ENST00000538886 CTTNBP2Q8WZ74 1663 aa12.79□□□□□ -0.36
GGA3-202ENST00000538886 SLC4A1APQ9BWU0 796 aaKnown RBP12.77□□□□□ -0.36
GGA3-202ENST00000538886 WDR7Q9Y4E6 1490 aa12.77□□□□□ -0.37
GGA3-202ENST00000538886 WASHC2CQ9Y4E1 1318 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms