RNA–Protein interactions for RNA: ENST00000537934.5

SEMA4D-221, Transcript of semaphorin 4D, humanhuman

TSL 2

Gene SEMA4D, Length 2,710 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-221ENST00000537934 WDR97A6NE52 1622 aa16.74■□□□□ 0.27
SEMA4D-221ENST00000537934 TDRD9Q8NDG6 1382 aaKnown RBP16.73■□□□□ 0.27
SEMA4D-221ENST00000537934 THOC2Q8NI27 1593 aaKnown RBP16.72■□□□□ 0.27
SEMA4D-221ENST00000537934 CEP162Q5TB80 1403 aa16.71■□□□□ 0.27
SEMA4D-221ENST00000537934 TARBP1Q13395 1621 aaKnown RBP16.71■□□□□ 0.27
SEMA4D-221ENST00000537934 ERICH3Q5RHP9 1530 aa16.69■□□□□ 0.26
SEMA4D-221ENST00000537934 CARMIL1Q5VZK9 1371 aa16.66■□□□□ 0.26
SEMA4D-221ENST00000537934 ABCA5Q8WWZ7 1642 aa16.66■□□□□ 0.26
SEMA4D-221ENST00000537934 RANGAP1P46060 587 aaPredicted RBP16.65■□□□□ 0.26
SEMA4D-221ENST00000537934 GAPVD1Q14C86 1478 aa16.65■□□□□ 0.26
SEMA4D-221ENST00000537934 AQRO60306 1485 aaKnown RBP eCLIP16.62■□□□□ 0.25
SEMA4D-221ENST00000537934 ZNF608Q9ULD9 1512 aaPredicted RBP16.61■□□□□ 0.25
SEMA4D-221ENST00000537934 IFT140Q96RY7 1462 aa16.61■□□□□ 0.25
SEMA4D-221ENST00000537934 CLIP1P30622 1438 aa16.57■□□□□ 0.24
SEMA4D-221ENST00000537934 CUL7Q14999 1698 aa16.56■□□□□ 0.24
SEMA4D-221ENST00000537934 PBRM1Q86U86 1689 aa16.54■□□□□ 0.24
SEMA4D-221ENST00000537934 EIF4G3O43432 1585 aaKnown RBP16.51■□□□□ 0.23
SEMA4D-221ENST00000537934 GRIN2BQ13224 1484 aa16.5■□□□□ 0.23
SEMA4D-221ENST00000537934 ADAMTS12P58397 1594 aa16.45■□□□□ 0.22
SEMA4D-221ENST00000537934 ERICH6Q7L0X2 663 aa16.44■□□□□ 0.22
SEMA4D-221ENST00000537934 FHAD1B1AJZ9 1412 aa16.44■□□□□ 0.22
SEMA4D-221ENST00000537934 SNAPC4Q5SXM2 1469 aa16.43■□□□□ 0.22
SEMA4D-221ENST00000537934 ARAP1Q96P48 1450 aa16.42■□□□□ 0.22
SEMA4D-221ENST00000537934 ARHGAP35Q9NRY4 1499 aa16.42■□□□□ 0.22
SEMA4D-221ENST00000537934 VPS8Q8N3P4 1428 aa16.41■□□□□ 0.22
SEMA4D-221ENST00000537934 CTTNBP2Q8WZ74 1663 aa16.4■□□□□ 0.22
SEMA4D-221ENST00000537934 P3H3Q8IVL6 736 aa16.36■□□□□ 0.21
SEMA4D-221ENST00000537934 MAGI1Q96QZ7 1491 aaPredicted RBP16.34■□□□□ 0.21
SEMA4D-221ENST00000537934 RBM19Q9Y4C8 960 aaKnown RBP16.33■□□□□ 0.21
SEMA4D-221ENST00000537934 FBLN2P98095 1184 aa16.32■□□□□ 0.2
SEMA4D-221ENST00000537934 GRIN2AQ12879 1464 aa16.32■□□□□ 0.2
SEMA4D-221ENST00000537934 CHMP7Q8WUX9 453 aaPredicted RBP16.3■□□□□ 0.2
SEMA4D-221ENST00000537934 SYNJ2O15056 1496 aa16.3■□□□□ 0.2
SEMA4D-221ENST00000537934 FHOD3Q2V2M9 1422 aa16.29■□□□□ 0.2
SEMA4D-221ENST00000537934 IQGAP2Q13576 1575 aa16.27■□□□□ 0.19
SEMA4D-221ENST00000537934 EFCAB5A4FU69 1503 aa16.27■□□□□ 0.19
SEMA4D-221ENST00000537934 APLP2Q06481 763 aa16.24■□□□□ 0.19
SEMA4D-221ENST00000537934 SAMD9Q5K651 1589 aa16.23■□□□□ 0.19
SEMA4D-221ENST00000537934 CEP170Q5SW79 1584 aa16.23■□□□□ 0.19
SEMA4D-221ENST00000537934 KIAA0586Q9BVV6 1533 aa16.21■□□□□ 0.19
SEMA4D-221ENST00000537934 BCANQ96GW7 911 aa16.21■□□□□ 0.19
SEMA4D-221ENST00000537934 MSH5O43196 834 aa16.21■□□□□ 0.19
SEMA4D-221ENST00000537934 FKBP8Q14318 412 aa16.19■□□□□ 0.18
SEMA4D-221ENST00000537934 MYT1LQ9UL68 1186 aa16.19■□□□□ 0.18
SEMA4D-221ENST00000537934 PCF11O94913 1555 aaKnown RBP16.19■□□□□ 0.18
SEMA4D-221ENST00000537934 NUP160Q12769 1436 aa16.18■□□□□ 0.18
SEMA4D-221ENST00000537934 KANK4Q5T7N3 995 aaPredicted RBP16.18■□□□□ 0.18
SEMA4D-221ENST00000537934 HNRNPUL2Q1KMD3 747 aaKnown RBP16.17■□□□□ 0.18
SEMA4D-221ENST00000537934 ATP1B4Q9UN42 357 aaPredicted RBP16.17■□□□□ 0.18
SEMA4D-221ENST00000537934 CHD1O14646 1710 aa16.16■□□□□ 0.18
SEMA4D-221ENST00000537934 UGGT2Q9NYU1 1516 aa16.16■□□□□ 0.18
SEMA4D-221ENST00000537934 FMN1Q68DA7 1419 aa16.14■□□□□ 0.17
SEMA4D-221ENST00000537934 FANCIQ9NVI1 1328 aa16.14■□□□□ 0.17
SEMA4D-221ENST00000537934 DISP1Q96F81 1524 aa16.13■□□□□ 0.17
SEMA4D-221ENST00000537934 CASKIN1Q8WXD9 1431 aa16.11■□□□□ 0.17
SEMA4D-221ENST00000537934 FYCO1Q9BQS8 1478 aa16.11■□□□□ 0.17
SEMA4D-221ENST00000537934 KIAA0556O60303 1618 aa16.1■□□□□ 0.17
SEMA4D-221ENST00000537934 TIAM1Q13009 1591 aa16.1■□□□□ 0.17
SEMA4D-221ENST00000537934 JPH4Q96JJ6 628 aa16.1■□□□□ 0.17
SEMA4D-221ENST00000537934 NEFLP07196 543 aa16.07■□□□□ 0.16
SEMA4D-221ENST00000537934 CFAP43Q8NDM7 1665 aa16.05■□□□□ 0.16
SEMA4D-221ENST00000537934 MAP3K1Q13233 1512 aa16.05■□□□□ 0.16
SEMA4D-221ENST00000537934 LRRIQ1Q96JM4 1722 aa16.05■□□□□ 0.16
SEMA4D-221ENST00000537934 LRRC9Q6ZRR7 1453 aa16.04■□□□□ 0.16
SEMA4D-221ENST00000537934 DEKP35659 375 aaKnown RBP16.03■□□□□ 0.16
SEMA4D-221ENST00000537934 KCNH8Q96L42 1107 aa16.03■□□□□ 0.16
SEMA4D-221ENST00000537934 ARID3CA6NKF2 412 aa16.02■□□□□ 0.15
SEMA4D-221ENST00000537934 ANO8Q9HCE9 1232 aaPredicted RBP16.01■□□□□ 0.15
SEMA4D-221ENST00000537934 CARMIL2Q6F5E8 1435 aa16■□□□□ 0.15
SEMA4D-221ENST00000537934 DHX57Q6P158 1386 aaKnown RBP15.99■□□□□ 0.15
SEMA4D-221ENST00000537934 PRG4Q92954 1404 aaPredicted RBP15.99■□□□□ 0.15
SEMA4D-221ENST00000537934 ITGAEP38570 1179 aa15.99■□□□□ 0.15
SEMA4D-221ENST00000537934 HECW1Q76N89 1606 aa15.97■□□□□ 0.15
SEMA4D-221ENST00000537934 PLB1Q6P1J6 1458 aa15.96■□□□□ 0.15
SEMA4D-221ENST00000537934 CDK13Q14004 1512 aaKnown RBP15.96■□□□□ 0.14
SEMA4D-221ENST00000537934 ERICH6BQ5W0A0 696 aa15.95■□□□□ 0.14
SEMA4D-221ENST00000537934 EPRSP07814 1512 aaKnown RBP15.95■□□□□ 0.14
SEMA4D-221ENST00000537934 SHROOM2Q13796 1616 aa15.94■□□□□ 0.14
SEMA4D-221ENST00000537934 RAPGEF6Q8TEU7 1601 aa15.94■□□□□ 0.14
SEMA4D-221ENST00000537934 CLASP1Q7Z460 1538 aa15.94■□□□□ 0.14
SEMA4D-221ENST00000537934 MTUS2Q5JR59 1369 aa15.94■□□□□ 0.14
SEMA4D-221ENST00000537934 ERCC6L2Q5T890 1561 aa15.93■□□□□ 0.14
SEMA4D-221ENST00000537934 PHLDB1Q86UU1 1377 aa15.93■□□□□ 0.14
SEMA4D-221ENST00000537934 NUP153P49790 1475 aaKnown RBP15.93■□□□□ 0.14
SEMA4D-221ENST00000537934 MAGI3Q5TCQ9 1506 aa15.93■□□□□ 0.14
SEMA4D-221ENST00000537934 CCDC18Q5T9S5 1454 aa15.92■□□□□ 0.14
SEMA4D-221ENST00000537934 CDK11AQ9UQ88 783 aaPredicted RBP15.9■□□□□ 0.14
SEMA4D-221ENST00000537934 RRBP1Q9P2E9 1410 aaKnown RBP15.9■□□□□ 0.14
SEMA4D-221ENST00000537934 PTPRGP23470 1445 aa15.88■□□□□ 0.13
SEMA4D-221ENST00000537934 CCNB3Q8WWL7 1395 aa15.88■□□□□ 0.13
SEMA4D-221ENST00000537934 EHBP1L1Q8N3D4 1523 aa15.87■□□□□ 0.13
SEMA4D-221ENST00000537934 ABCA8O94911 1581 aa15.86■□□□□ 0.13
SEMA4D-221ENST00000537934 NCOA2Q15596 1464 aa15.85■□□□□ 0.13
SEMA4D-221ENST00000537934 SALL2Q9Y467 1007 aaPredicted RBP15.83■□□□□ 0.13
SEMA4D-221ENST00000537934 SUPT6HQ7KZ85 1726 aaKnown RBP15.83■□□□□ 0.13
SEMA4D-221ENST00000537934 OSCARQ8IYS5 282 aa15.81■□□□□ 0.12
SEMA4D-221ENST00000537934 FAM50AQ14320 339 aaKnown RBP15.81■□□□□ 0.12
SEMA4D-221ENST00000537934 CCER2I3L3R5 266 aa15.8■□□□□ 0.12
SEMA4D-221ENST00000537934 ARHGEF11O15085 1522 aa15.79■□□□□ 0.12
SEMA4D-221ENST00000537934 ATP10BO94823 1461 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms