RNA–Protein interactions for RNA: ENST00000536513.5

ABCA4-207, Transcript of ATP binding cassette subfamily A member 4, humanhuman

TSL 1 (best) BASIC

Gene ABCA4, Length 3,740 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4-207ENST00000536513 CHIC2Q9UKJ5 165 aa12.2□□□□□ -0.46
ABCA4-207ENST00000536513 FHOD3Q2V2M9 1422 aa12.18□□□□□ -0.46
ABCA4-207ENST00000536513 URB2Q14146 1524 aaKnown RBP12.18□□□□□ -0.46
ABCA4-207ENST00000536513 MYT1LQ9UL68 1186 aa12.16□□□□□ -0.46
ABCA4-207ENST00000536513 SCAF1Q9H7N4 1312 aaKnown RBP12.15□□□□□ -0.46
ABCA4-207ENST00000536513 AMER1Q5JTC6 1135 aaPredicted RBP12.15□□□□□ -0.46
ABCA4-207ENST00000536513 NEUROD1Q13562 356 aa12.14□□□□□ -0.47
ABCA4-207ENST00000536513 GAPVD1Q14C86 1478 aa12.14□□□□□ -0.47
ABCA4-207ENST00000536513 YTHDC1Q96MU7 727 aaKnown RBP12.14□□□□□ -0.47
ABCA4-207ENST00000536513 ZNF608Q9ULD9 1512 aaPredicted RBP12.13□□□□□ -0.47
ABCA4-207ENST00000536513 KCNH8Q96L42 1107 aa12.13□□□□□ -0.47
ABCA4-207ENST00000536513 VPS8Q8N3P4 1428 aa12.09□□□□□ -0.47
ABCA4-207ENST00000536513 MTUS2Q5JR59 1369 aa12.09□□□□□ -0.47
ABCA4-207ENST00000536513 TRIM52Q96A61 297 aa12.08□□□□□ -0.48
ABCA4-207ENST00000536513 KCNA4P22459 653 aa12.08□□□□□ -0.48
ABCA4-207ENST00000536513 GTF3C3Q9Y5Q9 886 aa12.07□□□□□ -0.48
ABCA4-207ENST00000536513 ARAP1Q96P48 1450 aa12.07□□□□□ -0.48
ABCA4-207ENST00000536513 PRXQ9BXM0 1461 aa12.07□□□□□ -0.48
ABCA4-207ENST00000536513 LAMC3Q9Y6N6 1575 aa12.07□□□□□ -0.48
ABCA4-207ENST00000536513 RRP7BPQ9NSQ0 103 aa12.06□□□□□ -0.48
ABCA4-207ENST00000536513 KIF21AQ7Z4S6 1674 aa12.06□□□□□ -0.48
ABCA4-207ENST00000536513 MRC2Q9UBG0 1479 aa12.06□□□□□ -0.48
ABCA4-207ENST00000536513 DNMBPQ6XZF7 1577 aa12.06□□□□□ -0.48
ABCA4-207ENST00000536513 JPH4Q96JJ6 628 aa12.05□□□□□ -0.48
ABCA4-207ENST00000536513 CNGB1Q14028 1251 aaPredicted RBP12.03□□□□□ -0.48
ABCA4-207ENST00000536513 KIF21BO75037 1637 aa12.02□□□□□ -0.49
ABCA4-207ENST00000536513 ARHGAP35Q9NRY4 1499 aa12□□□□□ -0.49
ABCA4-207ENST00000536513 BIVM-ERCC5R4GMW8 1640 aa12□□□□□ -0.49
ABCA4-207ENST00000536513 ABCA10Q8WWZ4 1543 aa11.98□□□□□ -0.49
ABCA4-207ENST00000536513 SNAPC4Q5SXM2 1469 aa11.97□□□□□ -0.49
ABCA4-207ENST00000536513 HIRIP3Q9BW71 556 aaPredicted RBP11.97□□□□□ -0.49
ABCA4-207ENST00000536513 ACIN1Q9UKV3 1341 aaKnown RBP11.96□□□□□ -0.5
ABCA4-207ENST00000536513 SENP3Q9H4L4 574 aaPredicted RBP11.95□□□□□ -0.5
ABCA4-207ENST00000536513 CDK11AQ9UQ88 783 aaPredicted RBP11.95□□□□□ -0.5
ABCA4-207ENST00000536513 ZNF326Q5BKZ1 582 aaKnown RBP11.94□□□□□ -0.5
ABCA4-207ENST00000536513 GRIN2BQ13224 1484 aa11.93□□□□□ -0.5
ABCA4-207ENST00000536513 PLEKHD1A6NEE1 506 aa11.93□□□□□ -0.5
ABCA4-207ENST00000536513 SIN3AQ96ST3 1273 aa11.92□□□□□ -0.5
ABCA4-207ENST00000536513 POLR3GLQ9BT43 218 aa11.92□□□□□ -0.5
ABCA4-207ENST00000536513 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.91□□□□□ -0.5
ABCA4-207ENST00000536513 ZNF644Q9H582 1327 aaPredicted RBP11.91□□□□□ -0.5
ABCA4-207ENST00000536513 FOXD1Q16676 465 aa11.9□□□□□ -0.5
ABCA4-207ENST00000536513 CFDP1Q9UEE9 299 aaPredicted RBP11.9□□□□□ -0.5
ABCA4-207ENST00000536513 CCNB3Q8WWL7 1395 aa11.9□□□□□ -0.5
ABCA4-207ENST00000536513 FHAD1B1AJZ9 1412 aa11.9□□□□□ -0.5
ABCA4-207ENST00000536513 IFT140Q96RY7 1462 aa11.89□□□□□ -0.51
ABCA4-207ENST00000536513 PHF23Q9BUL5 403 aaPredicted RBP11.89□□□□□ -0.51
ABCA4-207ENST00000536513 ERICH3Q5RHP9 1530 aa11.88□□□□□ -0.51
ABCA4-207ENST00000536513 PHLDB1Q86UU1 1377 aa11.87□□□□□ -0.51
ABCA4-207ENST00000536513 DIEXFQ68CQ4 756 aaKnown RBP11.87□□□□□ -0.51
ABCA4-207ENST00000536513 CYB5RLQ6IPT4 315 aa11.86□□□□□ -0.51
ABCA4-207ENST00000536513 FMN1Q68DA7 1419 aa11.85□□□□□ -0.51
ABCA4-207ENST00000536513 NPM1P06748 294 aaKnown RBP eCLIP11.84□□□□□ -0.51
ABCA4-207ENST00000536513 HNRNPMP52272 730 aaKnown RBP eCLIP11.82□□□□□ -0.52
ABCA4-207ENST00000536513 PRDM2Q13029 1718 aa11.82□□□□□ -0.52
ABCA4-207ENST00000536513 ARXQ96QS3 562 aa11.82□□□□□ -0.52
ABCA4-207ENST00000536513 TIMELESSQ9UNS1 1208 aa11.81□□□□□ -0.52
ABCA4-207ENST00000536513 CARMIL2Q6F5E8 1435 aa11.8□□□□□ -0.52
ABCA4-207ENST00000536513 PRG4Q92954 1404 aaPredicted RBP11.8□□□□□ -0.52
ABCA4-207ENST00000536513 PTPRGP23470 1445 aa11.8□□□□□ -0.52
ABCA4-207ENST00000536513 CDK13Q14004 1512 aaKnown RBP11.79□□□□□ -0.52
ABCA4-207ENST00000536513 OSCARQ8IYS5 282 aa11.79□□□□□ -0.52
ABCA4-207ENST00000536513 PLB1Q6P1J6 1458 aa11.78□□□□□ -0.52
ABCA4-207ENST00000536513 TSPY4P0CV99 314 aa11.78□□□□□ -0.52
ABCA4-207ENST00000536513 TSPY10P0CW01 314 aa11.78□□□□□ -0.52
ABCA4-207ENST00000536513 GRIN2AQ12879 1464 aa11.78□□□□□ -0.52
ABCA4-207ENST00000536513 RAB3GAP2Q9H2M9 1393 aa11.77□□□□□ -0.52
ABCA4-207ENST00000536513 LRRC9Q6ZRR7 1453 aa11.75□□□□□ -0.53
ABCA4-207ENST00000536513 SLC4A1APQ9BWU0 796 aaKnown RBP11.75□□□□□ -0.53
ABCA4-207ENST00000536513 KDM2AQ9Y2K7 1162 aa11.75□□□□□ -0.53
ABCA4-207ENST00000536513 EIF4G3O43432 1585 aaKnown RBP11.75□□□□□ -0.53
ABCA4-207ENST00000536513 PCF11O94913 1555 aaKnown RBP11.75□□□□□ -0.53
ABCA4-207ENST00000536513 TARBP1Q13395 1621 aaKnown RBP11.74□□□□□ -0.53
ABCA4-207ENST00000536513 WDR62O43379 1518 aa11.73□□□□□ -0.53
ABCA4-207ENST00000536513 RGL3Q3MIN7 710 aa11.73□□□□□ -0.53
ABCA4-207ENST00000536513 SYNJ2O15056 1496 aa11.73□□□□□ -0.53
ABCA4-207ENST00000536513 CASKIN1Q8WXD9 1431 aa11.72□□□□□ -0.53
ABCA4-207ENST00000536513 IQGAP2Q13576 1575 aa11.72□□□□□ -0.53
ABCA4-207ENST00000536513 ZNF316A6NFI3 1004 aaPredicted RBP11.71□□□□□ -0.53
ABCA4-207ENST00000536513 KIAA0586Q9BVV6 1533 aa11.7□□□□□ -0.54
ABCA4-207ENST00000536513 CUL7Q14999 1698 aa11.7□□□□□ -0.54
ABCA4-207ENST00000536513 ABCA5Q8WWZ7 1642 aa11.69□□□□□ -0.54
ABCA4-207ENST00000536513 CHGAP10645 457 aaKnown RBP11.69□□□□□ -0.54
ABCA4-207ENST00000536513 NCOA2Q15596 1464 aa11.68□□□□□ -0.54
ABCA4-207ENST00000536513 SETD5Q9C0A6 1442 aa11.67□□□□□ -0.54
ABCA4-207ENST00000536513 TIAM1Q13009 1591 aa11.67□□□□□ -0.54
ABCA4-207ENST00000536513 DDX10Q13206 875 aaKnown RBP11.67□□□□□ -0.54
ABCA4-207ENST00000536513 TONSLQ96HA7 1378 aa11.66□□□□□ -0.54
ABCA4-207ENST00000536513 EIF5BO60841 1220 aaKnown RBP11.66□□□□□ -0.54
ABCA4-207ENST00000536513 ADAMTS12P58397 1594 aa11.66□□□□□ -0.54
ABCA4-207ENST00000536513 MAGI1Q96QZ7 1491 aaPredicted RBP11.65□□□□□ -0.54
ABCA4-207ENST00000536513 FGD6Q6ZV73 1430 aa11.65□□□□□ -0.54
ABCA4-207ENST00000536513 SENP3-EIF4A1A0A087X0R7 540 aa11.65□□□□□ -0.54
ABCA4-207ENST00000536513 PBRM1Q86U86 1689 aa11.65□□□□□ -0.55
ABCA4-207ENST00000536513 DHX57Q6P158 1386 aaKnown RBP11.65□□□□□ -0.55
ABCA4-207ENST00000536513 MLECQ14165 292 aa11.64□□□□□ -0.55
ABCA4-207ENST00000536513 AFAP1Q8N556 730 aa11.64□□□□□ -0.55
ABCA4-207ENST00000536513 EPRSP07814 1512 aaKnown RBP11.64□□□□□ -0.55
ABCA4-207ENST00000536513 THOC2Q8NI27 1593 aaKnown RBP11.64□□□□□ -0.55
ABCA4-207ENST00000536513 TULP1O00294 542 aaPredicted RBP11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms