RNA–Protein interactions for RNA: ENST00000536513.5

ABCA4-207, Transcript of ATP binding cassette subfamily A member 4, humanhuman

TSL 1 (best) BASIC

Gene ABCA4, Length 3,740 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4-207ENST00000536513 NISCHQ9Y2I1 1504 aa16.95■□□□□ 0.3
ABCA4-207ENST00000536513 DCAF8L2P0C7V8 631 aa15.61■□□□□ 0.09
ABCA4-207ENST00000536513 SHROOM4Q9ULL8 1493 aa15.14■□□□□ 0.01
ABCA4-207ENST00000536513 SUPT5HO00267 1087 aaKnown RBP14.74□□□□□ -0.05
ABCA4-207ENST00000536513 ABCC9O60706 1549 aa14.54□□□□□ -0.08
ABCA4-207ENST00000536513 CCDC180Q9P1Z9 1646 aa14.2□□□□□ -0.14
ABCA4-207ENST00000536513 ZCCHC6Q5VYS8 1495 aaKnown RBP14.12□□□□□ -0.15
ABCA4-207ENST00000536513 PABPN1Q86U42 306 aaKnown RBP eCLIP14.12□□□□□ -0.15
ABCA4-207ENST00000536513 EHMT2Q96KQ7 1210 aa14.05□□□□□ -0.16
ABCA4-207ENST00000536513 SCRIBQ14160 1630 aa13.92□□□□□ -0.18
ABCA4-207ENST00000536513 SLC24A1O60721 1099 aa13.89□□□□□ -0.19
ABCA4-207ENST00000536513 FAM9AQ8IZU1 332 aaPredicted RBP13.8□□□□□ -0.2
ABCA4-207ENST00000536513 CHIC1Q5VXU3 224 aa13.56□□□□□ -0.24
ABCA4-207ENST00000536513 CECR2Q9BXF3 1484 aa13.53□□□□□ -0.24
ABCA4-207ENST00000536513 TRIM41Q8WV44 630 aa13.53□□□□□ -0.24
ABCA4-207ENST00000536513 RB1CC1Q8TDY2 1594 aa13.52□□□□□ -0.25
ABCA4-207ENST00000536513 NACADO15069 1562 aa13.5□□□□□ -0.25
ABCA4-207ENST00000536513 LOC105371045A0A1W2PR82 267 aa13.5□□□□□ -0.25
ABCA4-207ENST00000536513 DCAF1Q9Y4B6 1507 aa13.48□□□□□ -0.25
ABCA4-207ENST00000536513 RANGAP1P46060 587 aaPredicted RBP13.44□□□□□ -0.26
ABCA4-207ENST00000536513 RSF1Q96T23 1441 aaPredicted RBP13.4□□□□□ -0.26
ABCA4-207ENST00000536513 TTBK1Q5TCY1 1321 aaPredicted RBP13.39□□□□□ -0.27
ABCA4-207ENST00000536513 PPARGC1BQ86YN6 1023 aaKnown RBP13.3□□□□□ -0.28
ABCA4-207ENST00000536513 MROH2BQ7Z745 1585 aa13.3□□□□□ -0.28
ABCA4-207ENST00000536513 MYO15BQ96JP2 1530 aa13.18□□□□□ -0.3
ABCA4-207ENST00000536513 WIZO95785 1651 aa13.17□□□□□ -0.3
ABCA4-207ENST00000536513 UBTFP17480 764 aaKnown RBP13.14□□□□□ -0.31
ABCA4-207ENST00000536513 PCGF6Q9BYE7 350 aa13.12□□□□□ -0.31
ABCA4-207ENST00000536513 BAZ1AQ9NRL2 1556 aaPredicted RBP13.06□□□□□ -0.32
ABCA4-207ENST00000536513 DNAJC5BQ9UF47 199 aa13.03□□□□□ -0.32
ABCA4-207ENST00000536513 UNC13AQ9UPW8 1703 aa13□□□□□ -0.33
ABCA4-207ENST00000536513 BICRAQ9NZM4 1560 aa13□□□□□ -0.33
ABCA4-207ENST00000536513 BAZ1BQ9UIG0 1483 aaKnown RBP12.99□□□□□ -0.33
ABCA4-207ENST00000536513 CCDC88BA6NC98 1476 aa12.97□□□□□ -0.33
ABCA4-207ENST00000536513 ATP1B4Q9UN42 357 aaPredicted RBP12.95□□□□□ -0.34
ABCA4-207ENST00000536513 SMARCA4P51532 1647 aa12.94□□□□□ -0.34
ABCA4-207ENST00000536513 ABCC8Q09428 1581 aa12.93□□□□□ -0.34
ABCA4-207ENST00000536513 ATAD2BQ9ULI0 1458 aa12.89□□□□□ -0.35
ABCA4-207ENST00000536513 CSRNP3Q8WYN3 585 aa12.81□□□□□ -0.36
ABCA4-207ENST00000536513 PELP1Q8IZL8 1130 aaKnown RBP12.81□□□□□ -0.36
ABCA4-207ENST00000536513 EIF4G1Q04637 1599 aaKnown RBP12.8□□□□□ -0.36
ABCA4-207ENST00000536513 P3H3Q8IVL6 736 aa12.79□□□□□ -0.36
ABCA4-207ENST00000536513 SOGA1O94964 1423 aa12.79□□□□□ -0.36
ABCA4-207ENST00000536513 TOP2AP11388 1531 aaKnown RBP12.79□□□□□ -0.36
ABCA4-207ENST00000536513 APLP2Q06481 763 aa12.77□□□□□ -0.37
ABCA4-207ENST00000536513 HRCP23327 699 aa12.77□□□□□ -0.37
ABCA4-207ENST00000536513 FBLN2P98095 1184 aa12.75□□□□□ -0.37
ABCA4-207ENST00000536513 WRNQ14191 1432 aaPredicted RBP eCLIP12.75□□□□□ -0.37
ABCA4-207ENST00000536513 SMARCA2P51531 1590 aa12.73□□□□□ -0.37
ABCA4-207ENST00000536513 ARID3CA6NKF2 412 aa12.72□□□□□ -0.37
ABCA4-207ENST00000536513 RUSC2Q8N2Y8 1516 aa12.72□□□□□ -0.37
ABCA4-207ENST00000536513 ITGAEP38570 1179 aa12.68□□□□□ -0.38
ABCA4-207ENST00000536513 CC2D2AQ9P2K1 1620 aa12.66□□□□□ -0.38
ABCA4-207ENST00000536513 NESP48681 1621 aa12.66□□□□□ -0.38
ABCA4-207ENST00000536513 PLPPR3Q6T4P5 718 aa12.65□□□□□ -0.38
ABCA4-207ENST00000536513 MYT1Q01538 1121 aa12.64□□□□□ -0.39
ABCA4-207ENST00000536513 HNRNPUL2Q1KMD3 747 aaKnown RBP12.63□□□□□ -0.39
ABCA4-207ENST00000536513 NCAPD3P42695 1498 aa12.6□□□□□ -0.39
ABCA4-207ENST00000536513 TRIM26Q12899 539 aaPredicted RBP12.59□□□□□ -0.39
ABCA4-207ENST00000536513 CADPSQ9ULU8 1353 aa12.58□□□□□ -0.4
ABCA4-207ENST00000536513 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.57□□□□□ -0.4
ABCA4-207ENST00000536513 DAXXQ9UER7 740 aaPredicted RBP12.54□□□□□ -0.4
ABCA4-207ENST00000536513 TDRD9Q8NDG6 1382 aaKnown RBP12.54□□□□□ -0.4
ABCA4-207ENST00000536513 RTN4Q9NQC3 1192 aaKnown RBP12.53□□□□□ -0.4
ABCA4-207ENST00000536513 CCER1Q8TC90 406 aaPredicted RBP12.51□□□□□ -0.41
ABCA4-207ENST00000536513 CUX2O14529 1486 aa12.49□□□□□ -0.41
ABCA4-207ENST00000536513 ERCC6Q03468 1493 aa12.48□□□□□ -0.41
ABCA4-207ENST00000536513 SYNJ1O43426 1573 aa12.47□□□□□ -0.41
ABCA4-207ENST00000536513 FANCD2Q9BXW9 1451 aa12.47□□□□□ -0.41
ABCA4-207ENST00000536513 CEP162Q5TB80 1403 aa12.46□□□□□ -0.42
ABCA4-207ENST00000536513 RAD54L2Q9Y4B4 1467 aa12.46□□□□□ -0.42
ABCA4-207ENST00000536513 KIF27Q86VH2 1401 aa12.41□□□□□ -0.42
ABCA4-207ENST00000536513 RAPGEF2Q9Y4G8 1499 aa12.41□□□□□ -0.42
ABCA4-207ENST00000536513 CFTRP13569 1480 aa12.41□□□□□ -0.42
ABCA4-207ENST00000536513 CLIP1P30622 1438 aa12.4□□□□□ -0.42
ABCA4-207ENST00000536513 PEG3Q9GZU2 1588 aa12.39□□□□□ -0.43
ABCA4-207ENST00000536513 FAM50AQ14320 339 aaKnown RBP12.38□□□□□ -0.43
ABCA4-207ENST00000536513 HMGXB3Q12766 1538 aa12.38□□□□□ -0.43
ABCA4-207ENST00000536513 CHMP7Q8WUX9 453 aaPredicted RBP12.37□□□□□ -0.43
ABCA4-207ENST00000536513 GOLGA3Q08378 1498 aa12.37□□□□□ -0.43
ABCA4-207ENST00000536513 PDS5BQ9NTI5 1447 aa12.36□□□□□ -0.43
ABCA4-207ENST00000536513 FGD5Q6ZNL6 1462 aa12.36□□□□□ -0.43
ABCA4-207ENST00000536513 CUX1P39880 1505 aa12.36□□□□□ -0.43
ABCA4-207ENST00000536513 CARMIL1Q5VZK9 1371 aa12.36□□□□□ -0.43
ABCA4-207ENST00000536513 CEP164Q9UPV0 1460 aa12.35□□□□□ -0.43
ABCA4-207ENST00000536513 NCBP3Q53F19 620 aaKnown RBP12.34□□□□□ -0.43
ABCA4-207ENST00000536513 TNIKQ9UKE5 1360 aa12.33□□□□□ -0.44
ABCA4-207ENST00000536513 AQRO60306 1485 aaKnown RBP eCLIP12.31□□□□□ -0.44
ABCA4-207ENST00000536513 KANK4Q5T7N3 995 aaPredicted RBP12.3□□□□□ -0.44
ABCA4-207ENST00000536513 EEA1Q15075 1411 aa12.29□□□□□ -0.44
ABCA4-207ENST00000536513 IGF1RP08069 1367 aa12.28□□□□□ -0.44
ABCA4-207ENST00000536513 PRKCSHP14314 528 aaPredicted RBP12.24□□□□□ -0.45
ABCA4-207ENST00000536513 ERICH6Q7L0X2 663 aa12.23□□□□□ -0.45
ABCA4-207ENST00000536513 CENPBP07199 599 aaPredicted RBP12.23□□□□□ -0.45
ABCA4-207ENST00000536513 ZNF777Q9ULD5 760 aaPredicted RBP12.23□□□□□ -0.45
ABCA4-207ENST00000536513 POLA1P09884 1462 aaPredicted RBP12.22□□□□□ -0.45
ABCA4-207ENST00000536513 TOPBP1Q92547 1522 aa12.22□□□□□ -0.45
ABCA4-207ENST00000536513 ZEB1P37275 1124 aaPredicted RBP12.21□□□□□ -0.45
ABCA4-207ENST00000536513 AEBP2Q6ZN18 517 aaPredicted RBP12.21□□□□□ -0.45
ABCA4-207ENST00000536513 TOP2BQ02880 1626 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms