RNA–Protein interactions for RNA: ENST00000532678.1

PUM1-223, Transcript of pumilio RNA binding family member 1, human

TSL 4

Gene PUM1, Length 793 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PUM1-223	ENST00000532678	RIMBP3B	A6NNM3	1639 aa		14.55	□□□□□ -0.08
PUM1-223	ENST00000532678	TARBP1	Q13395	1621 aa	Known RBP	14.55	□□□□□ -0.08
PUM1-223	ENST00000532678	RIMBP3	Q9UFD9	1639 aa		14.55	□□□□□ -0.08
PUM1-223	ENST00000532678	POLA2	Q14181	598 aa		14.54	□□□□□ -0.08
PUM1-223	ENST00000532678	CHD1	O14646	1710 aa		14.53	□□□□□ -0.08
PUM1-223	ENST00000532678	ABCC8	Q09428	1581 aa		14.52	□□□□□ -0.08
PUM1-223	ENST00000532678	POLA1	P09884	1462 aa	Predicted RBP	14.52	□□□□□ -0.08
PUM1-223	ENST00000532678	AQR	O60306	1485 aa	Known RBP eCLIP	14.5	□□□□□ -0.09	6e-7	■■■■□ 23.8
PUM1-223	ENST00000532678	ABCB7	O75027	752 aa		14.49	□□□□□ -0.09
PUM1-223	ENST00000532678	RAD54L2	Q9Y4B4	1467 aa		14.49	□□□□□ -0.09
PUM1-223	ENST00000532678	ARHGEF11	O15085	1522 aa		14.47	□□□□□ -0.09
PUM1-223	ENST00000532678	CUX1	P39880	1505 aa		14.44	□□□□□ -0.1
PUM1-223	ENST00000532678	FGD5	Q6ZNL6	1462 aa		14.44	□□□□□ -0.1
PUM1-223	ENST00000532678	SUPT5H	O00267	1087 aa	Known RBP	14.42	□□□□□ -0.1
PUM1-223	ENST00000532678	ZBTB12	Q9Y330	459 aa	Predicted RBP	14.41	□□□□□ -0.1
PUM1-223	ENST00000532678	TDRD9	Q8NDG6	1382 aa	Known RBP	14.41	□□□□□ -0.1
PUM1-223	ENST00000532678	SOGA1	O94964	1423 aa		14.4	□□□□□ -0.1
PUM1-223	ENST00000532678	SNAPC4	Q5SXM2	1469 aa		14.39	□□□□□ -0.11
PUM1-223	ENST00000532678	WDR97	A6NE52	1622 aa		14.39	□□□□□ -0.11
PUM1-223	ENST00000532678	FBLN2	P98095	1184 aa		14.38	□□□□□ -0.11
PUM1-223	ENST00000532678	ARAP1	Q96P48	1450 aa		14.35	□□□□□ -0.11
PUM1-223	ENST00000532678	PBRM1	Q86U86	1689 aa		14.33	□□□□□ -0.11
PUM1-223	ENST00000532678	CLASP1	Q7Z460	1538 aa		14.31	□□□□□ -0.12
PUM1-223	ENST00000532678	CYB5RL	Q6IPT4	315 aa		14.3	□□□□□ -0.12
PUM1-223	ENST00000532678	GRIN2B	Q13224	1484 aa		14.29	□□□□□ -0.12
PUM1-223	ENST00000532678	MAGI1	Q96QZ7	1491 aa	Predicted RBP	14.28	□□□□□ -0.12
PUM1-223	ENST00000532678	ABCA5	Q8WWZ7	1642 aa		14.27	□□□□□ -0.12
PUM1-223	ENST00000532678	SYNJ1	O43426	1573 aa		14.27	□□□□□ -0.12
PUM1-223	ENST00000532678	SYNJ2	O15056	1496 aa		14.25	□□□□□ -0.13
PUM1-223	ENST00000532678	GAPVD1	Q14C86	1478 aa		14.25	□□□□□ -0.13
PUM1-223	ENST00000532678	ABCA10	Q8WWZ4	1543 aa		14.24	□□□□□ -0.13
PUM1-223	ENST00000532678	MKRN4P	Q13434	485 aa	Predicted RBP	14.23	□□□□□ -0.13
PUM1-223	ENST00000532678	CHMP7	Q8WUX9	453 aa	Predicted RBP	14.23	□□□□□ -0.13
PUM1-223	ENST00000532678	BIVM-ERCC5	R4GMW8	1640 aa		14.21	□□□□□ -0.13
PUM1-223	ENST00000532678	TOP2B	Q02880	1626 aa		14.18	□□□□□ -0.14
PUM1-223	ENST00000532678	ADAMTS12	P58397	1594 aa		14.17	□□□□□ -0.14
PUM1-223	ENST00000532678	WRN	Q14191	1432 aa	Predicted RBP eCLIP	14.15	□□□□□ -0.14	1e-10	■□□□□ 9.9
PUM1-223	ENST00000532678	ERCC6L2	Q5T890	1561 aa		14.14	□□□□□ -0.15
PUM1-223	ENST00000532678	CEP170	Q5SW79	1584 aa		14.13	□□□□□ -0.15
PUM1-223	ENST00000532678	GRIN2A	Q12879	1464 aa		14.12	□□□□□ -0.15
PUM1-223	ENST00000532678	NUP160	Q12769	1436 aa		14.07	□□□□□ -0.16
PUM1-223	ENST00000532678	FHAD1	B1AJZ9	1412 aa		14.05	□□□□□ -0.16
PUM1-223	ENST00000532678	ERICH3	Q5RHP9	1530 aa		14.05	□□□□□ -0.16
PUM1-223	ENST00000532678	RBM42	Q9BTD8	480 aa	Known RBP	14.04	□□□□□ -0.16
PUM1-223	ENST00000532678	SHROOM2	Q13796	1616 aa		14.04	□□□□□ -0.16
PUM1-223	ENST00000532678	SPDYE2B	A6NHP3	402 aa		14	□□□□□ -0.17
PUM1-223	ENST00000532678	SPDYE6	P0CI01	402 aa		14	□□□□□ -0.17
PUM1-223	ENST00000532678	SPDYE2	Q495Y8	402 aa		14	□□□□□ -0.17
PUM1-223	ENST00000532678	RUSC2	Q8N2Y8	1516 aa		13.98	□□□□□ -0.17
PUM1-223	ENST00000532678	PRG4	Q92954	1404 aa	Predicted RBP	13.93	□□□□□ -0.18
PUM1-223	ENST00000532678	SPDYE4	A6NLX3	237 aa		13.89	□□□□□ -0.19
PUM1-223	ENST00000532678	SSUH2	Q9Y2M2	353 aa		13.89	□□□□□ -0.19
PUM1-223	ENST00000532678	KIF13A	Q9H1H9	1805 aa		13.89	□□□□□ -0.19
PUM1-223	ENST00000532678	CUL7	Q14999	1698 aa		13.88	□□□□□ -0.19
PUM1-223	ENST00000532678	JPH4	Q96JJ6	628 aa		13.86	□□□□□ -0.19
PUM1-223	ENST00000532678	ZNF692	Q9BU19	519 aa	Predicted RBP	13.86	□□□□□ -0.19
PUM1-223	ENST00000532678	AKT1S1	Q96B36	256 aa		13.85	□□□□□ -0.19
PUM1-223	ENST00000532678	KIF27	Q86VH2	1401 aa		13.84	□□□□□ -0.19
PUM1-223	ENST00000532678	ADCY10	Q96PN6	1610 aa		13.84	□□□□□ -0.19
PUM1-223	ENST00000532678	IGF1R	P08069	1367 aa		13.83	□□□□□ -0.19
PUM1-223	ENST00000532678	FKBP8	Q14318	412 aa		13.82	□□□□□ -0.2
PUM1-223	ENST00000532678	KIAA0586	Q9BVV6	1533 aa		13.8	□□□□□ -0.2
PUM1-223	ENST00000532678	PROM2	Q8N271	834 aa		13.79	□□□□□ -0.2
PUM1-223	ENST00000532678	DIP2B	Q9P265	1576 aa		13.77	□□□□□ -0.21
PUM1-223	ENST00000532678	MAPKBP1	O60336	1514 aa		13.75	□□□□□ -0.21
PUM1-223	ENST00000532678	CARMIL1	Q5VZK9	1371 aa		13.75	□□□□□ -0.21
PUM1-223	ENST00000532678	TTBK1	Q5TCY1	1321 aa	Predicted RBP	13.75	□□□□□ -0.21
PUM1-223	ENST00000532678	ABCC10	Q5T3U5	1492 aa		13.74	□□□□□ -0.21
PUM1-223	ENST00000532678	IQGAP2	Q13576	1575 aa		13.73	□□□□□ -0.21
PUM1-223	ENST00000532678	TSPOAP1	O95153	1857 aa		13.72	□□□□□ -0.21
PUM1-223	ENST00000532678	FAM69C	Q0P6D2	419 aa		13.71	□□□□□ -0.21
PUM1-223	ENST00000532678	NPM1	P06748	294 aa	Known RBP eCLIP	13.69	□□□□□ -0.22
PUM1-223	ENST00000532678	PTPRG	P23470	1445 aa		13.67	□□□□□ -0.22
PUM1-223	ENST00000532678	DISP1	Q96F81	1524 aa		13.66	□□□□□ -0.22
PUM1-223	ENST00000532678	REM2	Q8IYK8	340 aa	Predicted RBP	13.66	□□□□□ -0.22
PUM1-223	ENST00000532678	KDM6B	O15054	1643 aa		13.65	□□□□□ -0.22
PUM1-223	ENST00000532678	TNIK	Q9UKE5	1360 aa		13.65	□□□□□ -0.22
PUM1-223	ENST00000532678	CARMIL2	Q6F5E8	1435 aa		13.64	□□□□□ -0.23
PUM1-223	ENST00000532678	RAPGEF2	Q9Y4G8	1499 aa		13.64	□□□□□ -0.23
PUM1-223	ENST00000532678	KIAA0556	O60303	1618 aa		13.64	□□□□□ -0.23
PUM1-223	ENST00000532678	ABCC2	Q92887	1545 aa		13.64	□□□□□ -0.23
PUM1-223	ENST00000532678	CTTNBP2	Q8WZ74	1663 aa		13.63	□□□□□ -0.23
PUM1-223	ENST00000532678	PPRC1	Q5VV67	1664 aa	Known RBP	13.62	□□□□□ -0.23
PUM1-223	ENST00000532678	UGGT2	Q9NYU1	1516 aa		13.61	□□□□□ -0.23
PUM1-223	ENST00000532678	ASXL2	Q76L83	1435 aa		13.6	□□□□□ -0.23
PUM1-223	ENST00000532678	UACA	Q9BZF9	1416 aa		13.59	□□□□□ -0.23
PUM1-223	ENST00000532678	ZCCHC11	Q5TAX3	1644 aa	Known RBP	13.59	□□□□□ -0.23
PUM1-223	ENST00000532678	UHRF1BP1L	A0JNW5	1464 aa		13.58	□□□□□ -0.24
PUM1-223	ENST00000532678	SPDYE1	Q8NFV5	336 aa	Predicted RBP	13.57	□□□□□ -0.24
PUM1-223	ENST00000532678	GLI2	P10070	1586 aa		13.55	□□□□□ -0.24
PUM1-223	ENST00000532678	PLB1	Q6P1J6	1458 aa		13.55	□□□□□ -0.24
PUM1-223	ENST00000532678	STAG3	Q9UJ98	1225 aa		13.54	□□□□□ -0.24
PUM1-223	ENST00000532678	KDM5B	Q9UGL1	1544 aa		13.54	□□□□□ -0.24
PUM1-223	ENST00000532678	EPRS	P07814	1512 aa	Known RBP	13.52	□□□□□ -0.25
PUM1-223	ENST00000532678	MAP3K4	Q9Y6R4	1608 aa		13.52	□□□□□ -0.25
PUM1-223	ENST00000532678	PRX	Q9BXM0	1461 aa		13.5	□□□□□ -0.25
PUM1-223	ENST00000532678	ABCA8	O94911	1581 aa		13.49	□□□□□ -0.25
PUM1-223	ENST00000532678	PITPNM1	O00562	1244 aa		13.48	□□□□□ -0.25
PUM1-223	ENST00000532678	COL17A1	Q9UMD9	1497 aa	Predicted RBP	13.48	□□□□□ -0.25
PUM1-223	ENST00000532678	WDR7	Q9Y4E6	1490 aa		13.47	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms