RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 FAM50AQ14320 339 aaKnown RBP20.39■□□□□ 0.85
USP48-213ENST00000529637 RRBP1Q9P2E9 1410 aaKnown RBP20.34■□□□□ 0.85
USP48-213ENST00000529637 FKBP8Q14318 412 aa20.33■□□□□ 0.85
USP48-213ENST00000529637 FANCD2Q9BXW9 1451 aa20.29■□□□□ 0.84
USP48-213ENST00000529637 CC2D2AQ9P2K1 1620 aa20.28■□□□□ 0.84
USP48-213ENST00000529637 RBM19Q9Y4C8 960 aaKnown RBP20.25■□□□□ 0.83
USP48-213ENST00000529637 RAD54L2Q9Y4B4 1467 aa20.25■□□□□ 0.83
USP48-213ENST00000529637 RAB3GAP2Q9H2M9 1393 aa20.24■□□□□ 0.83
USP48-213ENST00000529637 PRDM2Q13029 1718 aa20.22■□□□□ 0.83
USP48-213ENST00000529637 FHOD3Q2V2M9 1422 aa20.2■□□□□ 0.82
USP48-213ENST00000529637 NESP48681 1621 aa20.2■□□□□ 0.82
USP48-213ENST00000529637 FHAD1B1AJZ9 1412 aa20.19■□□□□ 0.82
USP48-213ENST00000529637 TIAM1Q13009 1591 aa20.19■□□□□ 0.82
USP48-213ENST00000529637 PHLDB1Q86UU1 1377 aa20.18■□□□□ 0.82
USP48-213ENST00000529637 LRRC9Q6ZRR7 1453 aa20.17■□□□□ 0.82
USP48-213ENST00000529637 DDX10Q13206 875 aaKnown RBP20.15■□□□□ 0.82
USP48-213ENST00000529637 SIN3AQ96ST3 1273 aa20.15■□□□□ 0.82
USP48-213ENST00000529637 SETD5Q9C0A6 1442 aa20.13■□□□□ 0.81
USP48-213ENST00000529637 MSH5O43196 834 aa20.13■□□□□ 0.81
USP48-213ENST00000529637 POLA1P09884 1462 aaPredicted RBP20.12■□□□□ 0.81
USP48-213ENST00000529637 TOPBP1Q92547 1522 aa20.11■□□□□ 0.81
USP48-213ENST00000529637 TRIM52Q96A61 297 aa20.1■□□□□ 0.81
USP48-213ENST00000529637 TDRD9Q8NDG6 1382 aaKnown RBP20.09■□□□□ 0.81
USP48-213ENST00000529637 DNMBPQ6XZF7 1577 aa20.08■□□□□ 0.8
USP48-213ENST00000529637 PCF11O94913 1555 aaKnown RBP20.07■□□□□ 0.8
USP48-213ENST00000529637 HIRIP3Q9BW71 556 aaPredicted RBP20.05■□□□□ 0.8
USP48-213ENST00000529637 MAP3K1Q13233 1512 aa20.05■□□□□ 0.8
USP48-213ENST00000529637 ABCA10Q8WWZ4 1543 aa20.04■□□□□ 0.8
USP48-213ENST00000529637 NEFLP07196 543 aa20.03■□□□□ 0.8
USP48-213ENST00000529637 MTUS2Q5JR59 1369 aa20.03■□□□□ 0.8
USP48-213ENST00000529637 DNAJC5BQ9UF47 199 aa20■□□□□ 0.79
USP48-213ENST00000529637 MAPKBP1O60336 1514 aa19.99■□□□□ 0.79
USP48-213ENST00000529637 PPP1R15AO75807 674 aaPredicted RBP19.97■□□□□ 0.79
USP48-213ENST00000529637 CASKIN1Q8WXD9 1431 aa19.96■□□□□ 0.79
USP48-213ENST00000529637 FYCO1Q9BQS8 1478 aa19.96■□□□□ 0.79
USP48-213ENST00000529637 ARID3CA6NKF2 412 aa19.96■□□□□ 0.79
USP48-213ENST00000529637 FMN1Q68DA7 1419 aa19.95■□□□□ 0.78
USP48-213ENST00000529637 WDR97A6NE52 1622 aa19.95■□□□□ 0.78
USP48-213ENST00000529637 URB2Q14146 1524 aaKnown RBP19.93■□□□□ 0.78
USP48-213ENST00000529637 EFCAB5A4FU69 1503 aa19.92■□□□□ 0.78
USP48-213ENST00000529637 CFAP43Q8NDM7 1665 aa19.92■□□□□ 0.78
USP48-213ENST00000529637 GAPVD1Q14C86 1478 aa19.9■□□□□ 0.78
USP48-213ENST00000529637 IRX6P78412 446 aaPredicted RBP19.9■□□□□ 0.78
USP48-213ENST00000529637 CUL7Q14999 1698 aa19.9■□□□□ 0.78
USP48-213ENST00000529637 FGD6Q6ZV73 1430 aa19.88■□□□□ 0.77
USP48-213ENST00000529637 PDS5BQ9NTI5 1447 aa19.88■□□□□ 0.77
USP48-213ENST00000529637 CHIC2Q9UKJ5 165 aa19.88■□□□□ 0.77
USP48-213ENST00000529637 TONSLQ96HA7 1378 aa19.87■□□□□ 0.77
USP48-213ENST00000529637 CTTNBP2Q8WZ74 1663 aa19.84■□□□□ 0.77
USP48-213ENST00000529637 RRP7BPQ9NSQ0 103 aa19.84■□□□□ 0.77
USP48-213ENST00000529637 AQRO60306 1485 aaKnown RBP eCLIP19.84■□□□□ 0.777e-7■■■□□ 15
USP48-213ENST00000529637 ANP32CO43423 234 aa19.83■□□□□ 0.77
USP48-213ENST00000529637 LAMC3Q9Y6N6 1575 aa19.83■□□□□ 0.77
USP48-213ENST00000529637 CCER2I3L3R5 266 aa19.82■□□□□ 0.76
USP48-213ENST00000529637 FANCIQ9NVI1 1328 aa19.8■□□□□ 0.76
USP48-213ENST00000529637 TIMELESSQ9UNS1 1208 aa19.8■□□□□ 0.76
USP48-213ENST00000529637 CCDC18Q5T9S5 1454 aa19.79■□□□□ 0.76
USP48-213ENST00000529637 SNAPC4Q5SXM2 1469 aa19.79■□□□□ 0.76
USP48-213ENST00000529637 NCOA2Q15596 1464 aa19.78■□□□□ 0.76
USP48-213ENST00000529637 ERICH6Q7L0X2 663 aa19.77■□□□□ 0.76
USP48-213ENST00000529637 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.76■□□□□ 0.75
USP48-213ENST00000529637 PTPRKQ15262 1439 aa19.76■□□□□ 0.75
USP48-213ENST00000529637 CDK11AQ9UQ88 783 aaPredicted RBP19.75■□□□□ 0.75
USP48-213ENST00000529637 MYOM3Q5VTT5 1437 aa19.75■□□□□ 0.75
USP48-213ENST00000529637 ABCA5Q8WWZ7 1642 aa19.72■□□□□ 0.75
USP48-213ENST00000529637 HNRNPUQ00839 825 aaKnown RBP eCLIP19.72■□□□□ 0.75
USP48-213ENST00000529637 HFM1A2PYH4 1435 aa19.7■□□□□ 0.74
USP48-213ENST00000529637 UACAQ9BZF9 1416 aa19.69■□□□□ 0.74
USP48-213ENST00000529637 GRIN2BQ13224 1484 aa19.69■□□□□ 0.74
USP48-213ENST00000529637 KIF21AQ7Z4S6 1674 aa19.68■□□□□ 0.74
USP48-213ENST00000529637 NAIPQ13075 1403 aa19.67■□□□□ 0.74
USP48-213ENST00000529637 SAMD9Q5K651 1589 aa19.66■□□□□ 0.74
USP48-213ENST00000529637 DEKP35659 375 aaKnown RBP19.66■□□□□ 0.74
USP48-213ENST00000529637 SUPT6HQ7KZ85 1726 aaKnown RBP19.64■□□□□ 0.74
USP48-213ENST00000529637 PTPN23Q9H3S7 1636 aa19.64■□□□□ 0.73
USP48-213ENST00000529637 EHBP1L1Q8N3D4 1523 aa19.63■□□□□ 0.73
USP48-213ENST00000529637 FOXD1Q16676 465 aa19.63■□□□□ 0.73
USP48-213ENST00000529637 LRRIQ1Q96JM4 1722 aa19.6■□□□□ 0.73
USP48-213ENST00000529637 PRKCSHP14314 528 aaPredicted RBP19.6■□□□□ 0.73
USP48-213ENST00000529637 CDK13Q14004 1512 aaKnown RBP19.59■□□□□ 0.73
USP48-213ENST00000529637 FBLN2P98095 1184 aa19.59■□□□□ 0.73
USP48-213ENST00000529637 MAGI3Q5TCQ9 1506 aa19.58■□□□□ 0.73
USP48-213ENST00000529637 B4GALNT3Q6L9W6 998 aa19.57■□□□□ 0.72
USP48-213ENST00000529637 TARBP1Q13395 1621 aaKnown RBP19.56■□□□□ 0.72
USP48-213ENST00000529637 IQGAP2Q13576 1575 aa19.56■□□□□ 0.72
USP48-213ENST00000529637 UGGT2Q9NYU1 1516 aa19.56■□□□□ 0.72
USP48-213ENST00000529637 EPRSP07814 1512 aaKnown RBP19.55■□□□□ 0.72
USP48-213ENST00000529637 NBR1Q14596 966 aa19.55■□□□□ 0.72
USP48-213ENST00000529637 CCDC184Q52MB2 194 aa19.55■□□□□ 0.72
USP48-213ENST00000529637 MPHOSPH9Q99550 1183 aa19.55■□□□□ 0.72
USP48-213ENST00000529637 THOC2Q8NI27 1593 aaKnown RBP19.55■□□□□ 0.72
USP48-213ENST00000529637 HSPA5P11021 654 aaKnown RBP19.53■□□□□ 0.72
USP48-213ENST00000529637 HECW1Q76N89 1606 aa19.53■□□□□ 0.72
USP48-213ENST00000529637 PPP4R2Q9NY27 417 aa19.53■□□□□ 0.72
USP48-213ENST00000529637 PAK3O75914 559 aaPredicted RBP19.52■□□□□ 0.72
USP48-213ENST00000529637 ZNF777Q9ULD5 760 aaPredicted RBP19.52■□□□□ 0.72
USP48-213ENST00000529637 ZNF644Q9H582 1327 aaPredicted RBP19.52■□□□□ 0.71
USP48-213ENST00000529637 MRC2Q9UBG0 1479 aa19.51■□□□□ 0.71
USP48-213ENST00000529637 ZNF608Q9ULD9 1512 aaPredicted RBP19.5■□□□□ 0.71
USP48-213ENST00000529637 EIF4G2P78344 907 aaKnown RBP eCLIP19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms