RNA–Protein interactions for RNA: ENST00000528877.5

ITGB1-218, Transcript of integrin subunit beta 1, humanhuman

TSL 4

Gene ITGB1, Length 546 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-218ENST00000528877 WDR62O43379 1518 aa13.14□□□□□ -0.31
ITGB1-218ENST00000528877 MRC2Q9UBG0 1479 aa13.14□□□□□ -0.31
ITGB1-218ENST00000528877 CEP164Q9UPV0 1460 aa13.11□□□□□ -0.31
ITGB1-218ENST00000528877 FANCD2Q9BXW9 1451 aa13.1□□□□□ -0.31
ITGB1-218ENST00000528877 PIP4P2Q8N4L2 257 aa13.1□□□□□ -0.31
ITGB1-218ENST00000528877 PRDM2Q13029 1718 aa13.1□□□□□ -0.31
ITGB1-218ENST00000528877 CCDC88BA6NC98 1476 aa13.07□□□□□ -0.32
ITGB1-218ENST00000528877 ZNF692Q9BU19 519 aaPredicted RBP13.06□□□□□ -0.32
ITGB1-218ENST00000528877 SSUH2Q9Y2M2 353 aa13.03□□□□□ -0.32
ITGB1-218ENST00000528877 URB2Q14146 1524 aaKnown RBP12.99□□□□□ -0.33
ITGB1-218ENST00000528877 REM2Q8IYK8 340 aaPredicted RBP12.98□□□□□ -0.33
ITGB1-218ENST00000528877 SPDYE4A6NLX3 237 aa12.92□□□□□ -0.34
ITGB1-218ENST00000528877 ABCC8Q09428 1581 aa12.9□□□□□ -0.35
ITGB1-218ENST00000528877 FXR2P51116 673 aaKnown RBP eCLIP12.89□□□□□ -0.35
ITGB1-218ENST00000528877 DNMBPQ6XZF7 1577 aa12.89□□□□□ -0.35
ITGB1-218ENST00000528877 TOPBP1Q92547 1522 aa12.88□□□□□ -0.35
ITGB1-218ENST00000528877 SPDYE1Q8NFV5 336 aaPredicted RBP12.87□□□□□ -0.35
ITGB1-218ENST00000528877 LHX8Q68G74 356 aa12.86□□□□□ -0.35
ITGB1-218ENST00000528877 PLSCR2Q9NRY7 297 aa12.86□□□□□ -0.35
ITGB1-218ENST00000528877 IFT140Q96RY7 1462 aa12.85□□□□□ -0.35
ITGB1-218ENST00000528877 PITPNM1O00562 1244 aa12.81□□□□□ -0.36
ITGB1-218ENST00000528877 TARBP1Q13395 1621 aaKnown RBP12.8□□□□□ -0.36
ITGB1-218ENST00000528877 POLA1P09884 1462 aaPredicted RBP12.78□□□□□ -0.36
ITGB1-218ENST00000528877 EIF4G3O43432 1585 aaKnown RBP12.77□□□□□ -0.36
ITGB1-218ENST00000528877 EVX2Q03828 476 aa12.77□□□□□ -0.37
ITGB1-218ENST00000528877 ZNF608Q9ULD9 1512 aaPredicted RBP12.77□□□□□ -0.37
ITGB1-218ENST00000528877 WDR97A6NE52 1622 aa12.76□□□□□ -0.37
ITGB1-218ENST00000528877 CLEC11AQ9Y240 323 aa12.74□□□□□ -0.37
ITGB1-218ENST00000528877 CUX1P39880 1505 aa12.73□□□□□ -0.37
ITGB1-218ENST00000528877 STAG3Q9UJ98 1225 aa12.73□□□□□ -0.37
ITGB1-218ENST00000528877 FGD5Q6ZNL6 1462 aa12.7□□□□□ -0.38
ITGB1-218ENST00000528877 SUPT5HO00267 1087 aaKnown RBP12.68□□□□□ -0.38
ITGB1-218ENST00000528877 FKBP8Q14318 412 aa12.68□□□□□ -0.38
ITGB1-218ENST00000528877 PROM2Q8N271 834 aa12.68□□□□□ -0.38
ITGB1-218ENST00000528877 SOGA1O94964 1423 aa12.65□□□□□ -0.38
ITGB1-218ENST00000528877 RAD54L2Q9Y4B4 1467 aa12.65□□□□□ -0.38
ITGB1-218ENST00000528877 PRR29P0C7W0 189 aa12.64□□□□□ -0.39
ITGB1-218ENST00000528877 AQRO60306 1485 aaKnown RBP eCLIP12.64□□□□□ -0.39
ITGB1-218ENST00000528877 BIVM-ERCC5R4GMW8 1640 aa12.62□□□□□ -0.39
ITGB1-218ENST00000528877 TOP2BQ02880 1626 aa12.61□□□□□ -0.39
ITGB1-218ENST00000528877 ABCA10Q8WWZ4 1543 aa12.61□□□□□ -0.39
ITGB1-218ENST00000528877 ABCA5Q8WWZ7 1642 aa12.6□□□□□ -0.39
ITGB1-218ENST00000528877 CHD1O14646 1710 aa12.59□□□□□ -0.39
ITGB1-218ENST00000528877 MAGI1Q96QZ7 1491 aaPredicted RBP12.59□□□□□ -0.39
ITGB1-218ENST00000528877 GRIN2BQ13224 1484 aa12.58□□□□□ -0.4
ITGB1-218ENST00000528877 TDRD9Q8NDG6 1382 aaKnown RBP12.57□□□□□ -0.4
ITGB1-218ENST00000528877 SYNJ1O43426 1573 aa12.57□□□□□ -0.4
ITGB1-218ENST00000528877 WRNQ14191 1432 aaPredicted RBP eCLIP12.57□□□□□ -0.4
ITGB1-218ENST00000528877 SNAPC4Q5SXM2 1469 aa12.57□□□□□ -0.4
ITGB1-218ENST00000528877 PBRM1Q86U86 1689 aa12.56□□□□□ -0.4
ITGB1-218ENST00000528877 GABBR2O75899 941 aa12.55□□□□□ -0.4
ITGB1-218ENST00000528877 GAPVD1Q14C86 1478 aa12.54□□□□□ -0.4
ITGB1-218ENST00000528877 SYNJ2O15056 1496 aa12.53□□□□□ -0.4
ITGB1-218ENST00000528877 ARHGEF11O15085 1522 aa12.53□□□□□ -0.4
ITGB1-218ENST00000528877 RIMBP3CA6NJZ7 1639 aa12.53□□□□□ -0.4
ITGB1-218ENST00000528877 RIMBP3BA6NNM3 1639 aa12.53□□□□□ -0.4
ITGB1-218ENST00000528877 RIMBP3Q9UFD9 1639 aa12.53□□□□□ -0.4
ITGB1-218ENST00000528877 CLASP1Q7Z460 1538 aa12.52□□□□□ -0.4
ITGB1-218ENST00000528877 C19orf67A6NJJ6 358 aa12.52□□□□□ -0.41
ITGB1-218ENST00000528877 PRKAR2AP13861 404 aaKnown RBP12.51□□□□□ -0.41
ITGB1-218ENST00000528877 ADAMTS12P58397 1594 aa12.48□□□□□ -0.41
ITGB1-218ENST00000528877 ERICH3Q5RHP9 1530 aa12.47□□□□□ -0.41
ITGB1-218ENST00000528877 FBXO3Q9UK99 471 aa12.44□□□□□ -0.42
ITGB1-218ENST00000528877 GRIN2AQ12879 1464 aa12.42□□□□□ -0.42
ITGB1-218ENST00000528877 ARAP1Q96P48 1450 aa12.42□□□□□ -0.42
ITGB1-218ENST00000528877 FHAD1B1AJZ9 1412 aa12.41□□□□□ -0.42
ITGB1-218ENST00000528877 NUP160Q12769 1436 aa12.41□□□□□ -0.42
ITGB1-218ENST00000528877 CHMP7Q8WUX9 453 aaPredicted RBP12.4□□□□□ -0.42
ITGB1-218ENST00000528877 TRIM41Q8WV44 630 aa12.4□□□□□ -0.42
ITGB1-218ENST00000528877 PLEKHG5O94827 1062 aa12.38□□□□□ -0.43
ITGB1-218ENST00000528877 CHADLQ6NUI6 762 aa12.37□□□□□ -0.43
ITGB1-218ENST00000528877 CEP170Q5SW79 1584 aa12.37□□□□□ -0.43
ITGB1-218ENST00000528877 CREBZFQ9NS37 354 aa12.36□□□□□ -0.43
ITGB1-218ENST00000528877 SHROOM2Q13796 1616 aa12.35□□□□□ -0.43
ITGB1-218ENST00000528877 FARP1Q9Y4F1 1045 aaPredicted RBP12.33□□□□□ -0.44
ITGB1-218ENST00000528877 CUL7Q14999 1698 aa12.32□□□□□ -0.44
ITGB1-218ENST00000528877 RUSC2Q8N2Y8 1516 aa12.32□□□□□ -0.44
ITGB1-218ENST00000528877 KIF27Q86VH2 1401 aa12.31□□□□□ -0.44
ITGB1-218ENST00000528877 NPM1P06748 294 aaKnown RBP eCLIP12.28□□□□□ -0.44
ITGB1-218ENST00000528877 MIER1Q8N108 512 aa12.28□□□□□ -0.44
ITGB1-218ENST00000528877 IGF1RP08069 1367 aa12.27□□□□□ -0.45
ITGB1-218ENST00000528877 CLCN6P51797 869 aa12.26□□□□□ -0.45
ITGB1-218ENST00000528877 CYB5RLQ6IPT4 315 aa12.26□□□□□ -0.45
ITGB1-218ENST00000528877 PLCD3Q8N3E9 789 aa12.26□□□□□ -0.45
ITGB1-218ENST00000528877 ZBTB47Q9UFB7 747 aaPredicted RBP12.26□□□□□ -0.45
ITGB1-218ENST00000528877 ERCC6L2Q5T890 1561 aa12.26□□□□□ -0.45
ITGB1-218ENST00000528877 KIAA0586Q9BVV6 1533 aa12.21□□□□□ -0.45
ITGB1-218ENST00000528877 POTEIP0CG38 1075 aa12.2□□□□□ -0.46
ITGB1-218ENST00000528877 PCDH10Q9P2E7 1040 aa12.2□□□□□ -0.46
ITGB1-218ENST00000528877 MNX1P50219 401 aaPredicted RBP12.19□□□□□ -0.46
ITGB1-218ENST00000528877 PRG4Q92954 1404 aaPredicted RBP12.19□□□□□ -0.46
ITGB1-218ENST00000528877 CARMIL1Q5VZK9 1371 aa12.18□□□□□ -0.46
ITGB1-218ENST00000528877 VASPP50552 380 aaPredicted RBP12.17□□□□□ -0.46
ITGB1-218ENST00000528877 POTEMA6NI47 508 aa12.16□□□□□ -0.46
ITGB1-218ENST00000528877 PAK3O75914 559 aaPredicted RBP12.15□□□□□ -0.46
ITGB1-218ENST00000528877 CD44P16070 742 aaKnown RBP12.15□□□□□ -0.46
ITGB1-218ENST00000528877 IQGAP2Q13576 1575 aa12.13□□□□□ -0.47
ITGB1-218ENST00000528877 JPH4Q96JJ6 628 aa12.13□□□□□ -0.47
ITGB1-218ENST00000528877 RAPGEF2Q9Y4G8 1499 aa12.12□□□□□ -0.47
ITGB1-218ENST00000528877 PRXQ9BXM0 1461 aa12.08□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms