RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 AKT1S1Q96B36 256 aa12.78□□□□□ -0.36
CD44-228ENST00000528455 DNAJC5Q9H3Z4 198 aa12.78□□□□□ -0.36
CD44-228ENST00000528455 CFTRP13569 1480 aa12.74□□□□□ -0.37
CD44-228ENST00000528455 FBXO3Q9UK99 471 aa12.73□□□□□ -0.37
CD44-228ENST00000528455 MRC2Q9UBG0 1479 aa12.72□□□□□ -0.37
CD44-228ENST00000528455 CEP164Q9UPV0 1460 aa12.72□□□□□ -0.37
CD44-228ENST00000528455 FANCD2Q9BXW9 1451 aa12.71□□□□□ -0.38
CD44-228ENST00000528455 WDR62O43379 1518 aa12.67□□□□□ -0.38
CD44-228ENST00000528455 REM2Q8IYK8 340 aaPredicted RBP12.67□□□□□ -0.38
CD44-228ENST00000528455 STAG3Q9UJ98 1225 aa12.62□□□□□ -0.39
CD44-228ENST00000528455 SPDYE1Q8NFV5 336 aaPredicted RBP12.6□□□□□ -0.39
CD44-228ENST00000528455 PRDM2Q13029 1718 aa12.59□□□□□ -0.39
CD44-228ENST00000528455 VASPP50552 380 aaPredicted RBP12.59□□□□□ -0.39
CD44-228ENST00000528455 URB2Q14146 1524 aaKnown RBP12.57□□□□□ -0.4
CD44-228ENST00000528455 PITPNM1O00562 1244 aa12.52□□□□□ -0.41
CD44-228ENST00000528455 CLEC11AQ9Y240 323 aa12.52□□□□□ -0.41
CD44-228ENST00000528455 ABCC8Q09428 1581 aa12.51□□□□□ -0.41
CD44-228ENST00000528455 TOPBP1Q92547 1522 aa12.47□□□□□ -0.41
CD44-228ENST00000528455 IFT140Q96RY7 1462 aa12.46□□□□□ -0.41
CD44-228ENST00000528455 IFNLR1Q8IU57 520 aaPredicted RBP12.45□□□□□ -0.42
CD44-228ENST00000528455 DNMBPQ6XZF7 1577 aa12.44□□□□□ -0.42
CD44-228ENST00000528455 PRR29P0C7W0 189 aa12.44□□□□□ -0.42
CD44-228ENST00000528455 TRIM41Q8WV44 630 aa12.43□□□□□ -0.42
CD44-228ENST00000528455 WRNQ14191 1432 aaPredicted RBP eCLIP12.43□□□□□ -0.42
CD44-228ENST00000528455 MIER1Q8N108 512 aa12.42□□□□□ -0.42
CD44-228ENST00000528455 PLCD3Q8N3E9 789 aa12.41□□□□□ -0.42
CD44-228ENST00000528455 ZNF608Q9ULD9 1512 aaPredicted RBP12.4□□□□□ -0.42
CD44-228ENST00000528455 POLA1P09884 1462 aaPredicted RBP12.36□□□□□ -0.43
CD44-228ENST00000528455 TOP2BQ02880 1626 aa12.36□□□□□ -0.43
CD44-228ENST00000528455 CUX1P39880 1505 aa12.36□□□□□ -0.43
CD44-228ENST00000528455 TARBP1Q13395 1621 aaKnown RBP12.34□□□□□ -0.43
CD44-228ENST00000528455 BIVM-ERCC5R4GMW8 1640 aa12.34□□□□□ -0.43
CD44-228ENST00000528455 CREBZFQ9NS37 354 aa12.34□□□□□ -0.43
CD44-228ENST00000528455 SOGA1O94964 1423 aa12.34□□□□□ -0.43
CD44-228ENST00000528455 SYNJ1O43426 1573 aa12.33□□□□□ -0.44
CD44-228ENST00000528455 AQRO60306 1485 aaKnown RBP eCLIP12.33□□□□□ -0.44
CD44-228ENST00000528455 EIF4G3O43432 1585 aaKnown RBP12.32□□□□□ -0.44
CD44-228ENST00000528455 CHRDL2Q6WN34 429 aa12.32□□□□□ -0.44
CD44-228ENST00000528455 RAD54L2Q9Y4B4 1467 aa12.32□□□□□ -0.44
CD44-228ENST00000528455 PLEKHG5O94827 1062 aa12.31□□□□□ -0.44
CD44-228ENST00000528455 KLHL34Q8N239 644 aa12.31□□□□□ -0.44
CD44-228ENST00000528455 FGD5Q6ZNL6 1462 aa12.3□□□□□ -0.44
CD44-228ENST00000528455 RTN4Q9NQC3 1192 aaKnown RBP12.3□□□□□ -0.44
CD44-228ENST00000528455 AMER1Q5JTC6 1135 aaPredicted RBP12.29□□□□□ -0.44
CD44-228ENST00000528455 TDRD9Q8NDG6 1382 aaKnown RBP12.29□□□□□ -0.44
CD44-228ENST00000528455 FXR2P51116 673 aaKnown RBP eCLIP12.27□□□□□ -0.45
CD44-228ENST00000528455 MNX1P50219 401 aaPredicted RBP12.25□□□□□ -0.45
CD44-228ENST00000528455 SPOCK2Q92563 424 aa12.25□□□□□ -0.45
CD44-228ENST00000528455 ZBTB47Q9UFB7 747 aaPredicted RBP12.25□□□□□ -0.45
CD44-228ENST00000528455 WDR97A6NE52 1622 aa12.25□□□□□ -0.45
CD44-228ENST00000528455 CHADLQ6NUI6 762 aa12.23□□□□□ -0.45
CD44-228ENST00000528455 PIP4P2Q8N4L2 257 aa12.21□□□□□ -0.45
CD44-228ENST00000528455 CHMP7Q8WUX9 453 aaPredicted RBP12.21□□□□□ -0.45
CD44-228ENST00000528455 GRIN2BQ13224 1484 aa12.21□□□□□ -0.46
CD44-228ENST00000528455 CHD1O14646 1710 aa12.2□□□□□ -0.46
CD44-228ENST00000528455 PRKAR2AP13861 404 aaKnown RBP12.2□□□□□ -0.46
CD44-228ENST00000528455 SNAPC4Q5SXM2 1469 aa12.2□□□□□ -0.46
CD44-228ENST00000528455 ABCA10Q8WWZ4 1543 aa12.19□□□□□ -0.46
CD44-228ENST00000528455 GAPVD1Q14C86 1478 aa12.19□□□□□ -0.46
CD44-228ENST00000528455 MAGI1Q96QZ7 1491 aaPredicted RBP12.18□□□□□ -0.46
CD44-228ENST00000528455 EEA1Q15075 1411 aa12.17□□□□□ -0.46
CD44-228ENST00000528455 KIF27Q86VH2 1401 aa12.17□□□□□ -0.46
CD44-228ENST00000528455 RIMBP3CA6NJZ7 1639 aa12.16□□□□□ -0.46
CD44-228ENST00000528455 RIMBP3BA6NNM3 1639 aa12.16□□□□□ -0.46
CD44-228ENST00000528455 RIMBP3Q9UFD9 1639 aa12.16□□□□□ -0.46
CD44-228ENST00000528455 ARHGEF11O15085 1522 aa12.15□□□□□ -0.46
CD44-228ENST00000528455 SYNJ2O15056 1496 aa12.14□□□□□ -0.47
CD44-228ENST00000528455 NUBP1P53384 320 aa12.13□□□□□ -0.47
CD44-228ENST00000528455 FARP1Q9Y4F1 1045 aaPredicted RBP12.13□□□□□ -0.47
CD44-228ENST00000528455 PBRM1Q86U86 1689 aa12.13□□□□□ -0.47
CD44-228ENST00000528455 RUSC2Q8N2Y8 1516 aa12.12□□□□□ -0.47
CD44-228ENST00000528455 ABCA5Q8WWZ7 1642 aa12.12□□□□□ -0.47
CD44-228ENST00000528455 IGF1RP08069 1367 aa12.11□□□□□ -0.47
CD44-228ENST00000528455 CYB5RLQ6IPT4 315 aa12.11□□□□□ -0.47
CD44-228ENST00000528455 FAM9AQ8IZU1 332 aaPredicted RBP12.11□□□□□ -0.47
CD44-228ENST00000528455 NPM1P06748 294 aaKnown RBP eCLIP12.09□□□□□ -0.47
CD44-228ENST00000528455 PKD2Q13563 968 aa12.08□□□□□ -0.48
CD44-228ENST00000528455 CLASP1Q7Z460 1538 aa12.06□□□□□ -0.48
CD44-228ENST00000528455 ERICH3Q5RHP9 1530 aa12.06□□□□□ -0.48
CD44-228ENST00000528455 RASEFQ8IZ41 740 aa12.04□□□□□ -0.48
CD44-228ENST00000528455 CARMIL1Q5VZK9 1371 aa12.04□□□□□ -0.48
CD44-228ENST00000528455 FHAD1B1AJZ9 1412 aa12.03□□□□□ -0.48
CD44-228ENST00000528455 GRIN2AQ12879 1464 aa12.03□□□□□ -0.48
CD44-228ENST00000528455 ARAP1Q96P48 1450 aa12.03□□□□□ -0.48
CD44-228ENST00000528455 ADAMTS12P58397 1594 aa12.02□□□□□ -0.49
CD44-228ENST00000528455 CIZ1Q9ULV3 898 aaPredicted RBP12.02□□□□□ -0.49
CD44-228ENST00000528455 PRXQ9BXM0 1461 aa12□□□□□ -0.49
CD44-228ENST00000528455 GSE1Q14687 1217 aa11.99□□□□□ -0.49
CD44-228ENST00000528455 DCAF8Q5TAQ9 597 aa11.99□□□□□ -0.49
CD44-228ENST00000528455 CUL7Q14999 1698 aa11.99□□□□□ -0.49
CD44-228ENST00000528455 NUP160Q12769 1436 aa11.98□□□□□ -0.49
CD44-228ENST00000528455 FAM212AQ96EL1 285 aa11.98□□□□□ -0.49
CD44-228ENST00000528455 RAPGEF2Q9Y4G8 1499 aa11.97□□□□□ -0.49
CD44-228ENST00000528455 LOC105371045A0A1W2PR82 267 aa11.97□□□□□ -0.49
CD44-228ENST00000528455 CEP170Q5SW79 1584 aa11.96□□□□□ -0.5
CD44-228ENST00000528455 KIF21BO75037 1637 aa11.95□□□□□ -0.5
CD44-228ENST00000528455 ECM2O94769 699 aaPredicted RBP11.94□□□□□ -0.5
CD44-228ENST00000528455 UBTFP17480 764 aaKnown RBP11.94□□□□□ -0.5
CD44-228ENST00000528455 GOLGA3Q08378 1498 aa11.92□□□□□ -0.5
CD44-228ENST00000528455 TSPYL2Q9H2G4 693 aaPredicted RBP11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms