RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 AEBP2Q6ZN18 517 aaPredicted RBP22.97■■□□□ 1.27
CD44-228ENST00000528455 CHIC1Q5VXU3 224 aa22.53■■□□□ 1.2
CD44-228ENST00000528455 PHF23Q9BUL5 403 aaPredicted RBP19.86■□□□□ 0.77
CD44-228ENST00000528455 SENP3Q9H4L4 574 aaPredicted RBP19.42■□□□□ 0.7
CD44-228ENST00000528455 PLPPR3Q6T4P5 718 aa18.32■□□□□ 0.52
CD44-228ENST00000528455 FOXD1Q16676 465 aa18.04■□□□□ 0.48
CD44-228ENST00000528455 PPP6R1Q9UPN7 881 aa17.49■□□□□ 0.39
CD44-228ENST00000528455 ADRA2BP18089 450 aa17.45■□□□□ 0.38
CD44-228ENST00000528455 NISCHQ9Y2I1 1504 aa17.16■□□□□ 0.34
CD44-228ENST00000528455 PIAS4Q8N2W9 510 aaPredicted RBP17.01■□□□□ 0.31
CD44-228ENST00000528455 MSH5O43196 834 aa16.54■□□□□ 0.24
CD44-228ENST00000528455 PPP4R3CPQ6ZMV5 832 aa16.18■□□□□ 0.18
CD44-228ENST00000528455 KCNA4P22459 653 aa15.97■□□□□ 0.15
CD44-228ENST00000528455 SCAF1Q9H7N4 1312 aaKnown RBP15.92■□□□□ 0.14
CD44-228ENST00000528455 MAPK8IP2Q13387 824 aaPredicted RBP15.81■□□□□ 0.12
CD44-228ENST00000528455 NCBP3Q53F19 620 aaKnown RBP15.75■□□□□ 0.11
CD44-228ENST00000528455 CNKSR2Q8WXI2 1034 aa15.69■□□□□ 0.1
CD44-228ENST00000528455 NPM3O75607 178 aaKnown RBP15.56■□□□□ 0.08
CD44-228ENST00000528455 DMRT2Q9Y5R5 561 aa15.54■□□□□ 0.08
CD44-228ENST00000528455 RNF216Q9NWF9 866 aaPredicted RBP15.36■□□□□ 0.05
CD44-228ENST00000528455 HOXD11P31277 338 aaPredicted RBP15.28■□□□□ 0.04
CD44-228ENST00000528455 CCDC180Q9P1Z9 1646 aa15.2■□□□□ 0.02
CD44-228ENST00000528455 SLC4A1APQ9BWU0 796 aaKnown RBP15.19■□□□□ 0.02
CD44-228ENST00000528455 DNAJC5BQ9UF47 199 aa15.13■□□□□ 0.01
CD44-228ENST00000528455 ABCC9O60706 1549 aa15.06■□□□□ 0
CD44-228ENST00000528455 EHMT2Q96KQ7 1210 aa14.9□□□□□ -0.02
CD44-228ENST00000528455 POTEDQ86YR6 584 aa14.87□□□□□ -0.03
CD44-228ENST00000528455 DCAF8L1A6NGE4 600 aa14.81□□□□□ -0.04
CD44-228ENST00000528455 CSRNP3Q8WYN3 585 aa14.72□□□□□ -0.05
CD44-228ENST00000528455 ZBTB22O15209 634 aa14.71□□□□□ -0.05
CD44-228ENST00000528455 SLC4A2P04920 1241 aa14.69□□□□□ -0.06
CD44-228ENST00000528455 FOXD4L1Q9NU39 408 aa14.63□□□□□ -0.07
CD44-228ENST00000528455 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.52□□□□□ -0.09
CD44-228ENST00000528455 RB1CC1Q8TDY2 1594 aa14.42□□□□□ -0.1
CD44-228ENST00000528455 DCAF8L2P0C7V8 631 aa14.39□□□□□ -0.11
CD44-228ENST00000528455 MYCNP04198 464 aaPredicted RBP14.36□□□□□ -0.11
CD44-228ENST00000528455 NACADO15069 1562 aa14.35□□□□□ -0.11
CD44-228ENST00000528455 U3KPZ7 1027 aaPredicted RBP14.34□□□□□ -0.11
CD44-228ENST00000528455 ZCCHC6Q5VYS8 1495 aaKnown RBP14.31□□□□□ -0.12
CD44-228ENST00000528455 DCAF1Q9Y4B6 1507 aa14.25□□□□□ -0.13
CD44-228ENST00000528455 RNF39Q9H2S5 420 aa14.22□□□□□ -0.13
CD44-228ENST00000528455 MYO15BQ96JP2 1530 aa14.21□□□□□ -0.13
CD44-228ENST00000528455 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.15□□□□□ -0.14
CD44-228ENST00000528455 HNRNPUL2Q1KMD3 747 aaKnown RBP14.15□□□□□ -0.14
CD44-228ENST00000528455 SAMD1Q6SPF0 538 aaPredicted RBP14.12□□□□□ -0.15
CD44-228ENST00000528455 ATXN8OSP0DMR3 200 aa14.11□□□□□ -0.15
CD44-228ENST00000528455 PABPN1Q86U42 306 aaKnown RBP eCLIP14.08□□□□□ -0.16
CD44-228ENST00000528455 UNC13AQ9UPW8 1703 aa14.04□□□□□ -0.16
CD44-228ENST00000528455 C1QBPQ07021 282 aaKnown RBP14.03□□□□□ -0.16
CD44-228ENST00000528455 ATF5Q9Y2D1 282 aaPredicted RBP14.01□□□□□ -0.17
CD44-228ENST00000528455 BICRAQ9NZM4 1560 aa13.95□□□□□ -0.18
CD44-228ENST00000528455 APLP2Q06481 763 aa13.94□□□□□ -0.18
CD44-228ENST00000528455 SPINK5Q9NQ38 1064 aaPredicted RBP13.9□□□□□ -0.18
CD44-228ENST00000528455 SCRIBQ14160 1630 aa13.86□□□□□ -0.19
CD44-228ENST00000528455 SHROOM4Q9ULL8 1493 aa13.82□□□□□ -0.2
CD44-228ENST00000528455 CAPN15O75808 1086 aa13.79□□□□□ -0.2
CD44-228ENST00000528455 TRHP20396 242 aaPredicted RBP13.77□□□□□ -0.21
CD44-228ENST00000528455 ZNF219Q9P2Y4 722 aaPredicted RBP13.76□□□□□ -0.21
CD44-228ENST00000528455 CACNB1Q02641 598 aaPredicted RBP13.72□□□□□ -0.21
CD44-228ENST00000528455 EIF4G1Q04637 1599 aaKnown RBP13.62□□□□□ -0.23
CD44-228ENST00000528455 CC2D2AQ9P2K1 1620 aa13.61□□□□□ -0.23
CD44-228ENST00000528455 POLA2Q14181 598 aa13.59□□□□□ -0.23
CD44-228ENST00000528455 DSG3P32926 999 aa13.57□□□□□ -0.24
CD44-228ENST00000528455 CECR2Q9BXF3 1484 aa13.56□□□□□ -0.24
CD44-228ENST00000528455 ABCB7O75027 752 aa13.56□□□□□ -0.24
CD44-228ENST00000528455 MKRN4PQ13434 485 aaPredicted RBP13.41□□□□□ -0.26
CD44-228ENST00000528455 FBLN2P98095 1184 aa13.34□□□□□ -0.27
CD44-228ENST00000528455 ZBTB12Q9Y330 459 aaPredicted RBP13.34□□□□□ -0.27
CD44-228ENST00000528455 BAZ1AQ9NRL2 1556 aaPredicted RBP13.27□□□□□ -0.29
CD44-228ENST00000528455 NCAPD3P42695 1498 aa13.26□□□□□ -0.29
CD44-228ENST00000528455 FKBP8Q14318 412 aa13.26□□□□□ -0.29
CD44-228ENST00000528455 SMARCA4P51532 1647 aa13.24□□□□□ -0.29
CD44-228ENST00000528455 ATAD2BQ9ULI0 1458 aa13.23□□□□□ -0.29
CD44-228ENST00000528455 SMARCA2P51531 1590 aa13.21□□□□□ -0.29
CD44-228ENST00000528455 RSF1Q96T23 1441 aaPredicted RBP13.21□□□□□ -0.3
CD44-228ENST00000528455 MROH2BQ7Z745 1585 aa13.2□□□□□ -0.3
CD44-228ENST00000528455 HMGXB3Q12766 1538 aa13.15□□□□□ -0.3
CD44-228ENST00000528455 SPDYE4A6NLX3 237 aa13.13□□□□□ -0.31
CD44-228ENST00000528455 SUPT5HO00267 1087 aaKnown RBP13.13□□□□□ -0.31
CD44-228ENST00000528455 BAZ1BQ9UIG0 1483 aaKnown RBP13.12□□□□□ -0.31
CD44-228ENST00000528455 OSCARQ8IYS5 282 aa13.12□□□□□ -0.31
CD44-228ENST00000528455 PEG3Q9GZU2 1588 aa13.11□□□□□ -0.31
CD44-228ENST00000528455 WIZO95785 1651 aa13.07□□□□□ -0.32
CD44-228ENST00000528455 ERCC6Q03468 1493 aa13.03□□□□□ -0.32
CD44-228ENST00000528455 SPDYE2BA6NHP3 402 aa13.02□□□□□ -0.33
CD44-228ENST00000528455 SPDYE6P0CI01 402 aa13.02□□□□□ -0.33
CD44-228ENST00000528455 SPDYE2Q495Y8 402 aa13.02□□□□□ -0.33
CD44-228ENST00000528455 ZNF692Q9BU19 519 aaPredicted RBP12.98□□□□□ -0.33
CD44-228ENST00000528455 PROM2Q8N271 834 aa12.97□□□□□ -0.33
CD44-228ENST00000528455 NESP48681 1621 aa12.97□□□□□ -0.33
CD44-228ENST00000528455 SSUH2Q9Y2M2 353 aa12.96□□□□□ -0.33
CD44-228ENST00000528455 TOP2AP11388 1531 aaKnown RBP12.94□□□□□ -0.34
CD44-228ENST00000528455 CUX2O14529 1486 aa12.93□□□□□ -0.34
CD44-228ENST00000528455 LAMC3Q9Y6N6 1575 aa12.93□□□□□ -0.34
CD44-228ENST00000528455 RBM42Q9BTD8 480 aaKnown RBP12.89□□□□□ -0.35
CD44-228ENST00000528455 PDS5BQ9NTI5 1447 aa12.88□□□□□ -0.35
CD44-228ENST00000528455 CADPSQ9ULU8 1353 aa12.88□□□□□ -0.35
CD44-228ENST00000528455 CCDC88BA6NC98 1476 aa12.84□□□□□ -0.35
CD44-228ENST00000528455 KIF21AQ7Z4S6 1674 aa12.8□□□□□ -0.36
CD44-228ENST00000528455 THOC2Q8NI27 1593 aaKnown RBP12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms