RNA–Protein interactions for RNA: ENST00000524773.5

CAPN1-202, Transcript of calpain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CAPN1, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-202ENST00000524773 P3H3Q8IVL6 736 aa18.84■□□□□ 0.61
CAPN1-202ENST00000524773 DNAJC5BQ9UF47 199 aa18.84■□□□□ 0.61
CAPN1-202ENST00000524773 NESP48681 1621 aa18.82■□□□□ 0.6
CAPN1-202ENST00000524773 FANCD2Q9BXW9 1451 aa18.82■□□□□ 0.6
CAPN1-202ENST00000524773 RRBP1Q9P2E9 1410 aaKnown RBP18.81■□□□□ 0.6
CAPN1-202ENST00000524773 PRXQ9BXM0 1461 aa18.8■□□□□ 0.6
CAPN1-202ENST00000524773 MAPKBP1O60336 1514 aa18.75■□□□□ 0.59
CAPN1-202ENST00000524773 LAMC3Q9Y6N6 1575 aa18.75■□□□□ 0.59
CAPN1-202ENST00000524773 ARHGAP35Q9NRY4 1499 aa18.74■□□□□ 0.59
CAPN1-202ENST00000524773 WDR97A6NE52 1622 aa18.74■□□□□ 0.59
CAPN1-202ENST00000524773 IRX6P78412 446 aaPredicted RBP18.73■□□□□ 0.59
CAPN1-202ENST00000524773 KIF27Q86VH2 1401 aa18.72■□□□□ 0.59
CAPN1-202ENST00000524773 RBM19Q9Y4C8 960 aaKnown RBP18.72■□□□□ 0.59
CAPN1-202ENST00000524773 BCL11AQ9H165 835 aa18.69■□□□□ 0.58
CAPN1-202ENST00000524773 FGD5Q6ZNL6 1462 aa18.69■□□□□ 0.58
CAPN1-202ENST00000524773 PPP1R15AO75807 674 aaPredicted RBP18.67■□□□□ 0.58
CAPN1-202ENST00000524773 NEFLP07196 543 aa18.67■□□□□ 0.58
CAPN1-202ENST00000524773 PHLDB1Q86UU1 1377 aa18.67■□□□□ 0.58
CAPN1-202ENST00000524773 PDS5BQ9NTI5 1447 aa18.65■□□□□ 0.58
CAPN1-202ENST00000524773 DNMBPQ6XZF7 1577 aa18.64■□□□□ 0.57
CAPN1-202ENST00000524773 SETD5Q9C0A6 1442 aa18.64■□□□□ 0.57
CAPN1-202ENST00000524773 CUX2O14529 1486 aa18.64■□□□□ 0.57
CAPN1-202ENST00000524773 TOPBP1Q92547 1522 aa18.62■□□□□ 0.57
CAPN1-202ENST00000524773 ANP32CO43423 234 aa18.61■□□□□ 0.57
CAPN1-202ENST00000524773 MSH5O43196 834 aa18.57■□□□□ 0.56
CAPN1-202ENST00000524773 POLA1P09884 1462 aaPredicted RBP18.56■□□□□ 0.56
CAPN1-202ENST00000524773 URB2Q14146 1524 aaKnown RBP18.55■□□□□ 0.56
CAPN1-202ENST00000524773 IGF1RP08069 1367 aa18.55■□□□□ 0.56
CAPN1-202ENST00000524773 RAD54L2Q9Y4B4 1467 aa18.54■□□□□ 0.56
CAPN1-202ENST00000524773 KIF21AQ7Z4S6 1674 aa18.53■□□□□ 0.56
CAPN1-202ENST00000524773 HNRNPUQ00839 825 aaKnown RBP eCLIP18.52■□□□□ 0.56
CAPN1-202ENST00000524773 LRRC9Q6ZRR7 1453 aa18.5■□□□□ 0.55
CAPN1-202ENST00000524773 TIAM1Q13009 1591 aa18.5■□□□□ 0.55
CAPN1-202ENST00000524773 ABCA10Q8WWZ4 1543 aa18.49■□□□□ 0.55
CAPN1-202ENST00000524773 MAP3K1Q13233 1512 aa18.48■□□□□ 0.55
CAPN1-202ENST00000524773 CARMIL1Q5VZK9 1371 aa18.47■□□□□ 0.55
CAPN1-202ENST00000524773 CNGB1Q14028 1251 aaPredicted RBP18.45■□□□□ 0.54
CAPN1-202ENST00000524773 FHOD3Q2V2M9 1422 aa18.44■□□□□ 0.54
CAPN1-202ENST00000524773 TONSLQ96HA7 1378 aa18.44■□□□□ 0.54
CAPN1-202ENST00000524773 CCER2I3L3R5 266 aa18.44■□□□□ 0.54
CAPN1-202ENST00000524773 SENP3-EIF4A1A0A087X0R7 540 aa18.42■□□□□ 0.54
CAPN1-202ENST00000524773 CCDC184Q52MB2 194 aa18.42■□□□□ 0.54
CAPN1-202ENST00000524773 TDRD9Q8NDG6 1382 aaKnown RBP18.38■□□□□ 0.53
CAPN1-202ENST00000524773 CHIC2Q9UKJ5 165 aa18.37■□□□□ 0.53
CAPN1-202ENST00000524773 MRC2Q9UBG0 1479 aa18.37■□□□□ 0.53
CAPN1-202ENST00000524773 PCF11O94913 1555 aaKnown RBP18.36■□□□□ 0.53
CAPN1-202ENST00000524773 FAM9BQ8IZU0 186 aa18.33■□□□□ 0.53
CAPN1-202ENST00000524773 RRP7BPQ9NSQ0 103 aa18.33■□□□□ 0.53
CAPN1-202ENST00000524773 PTPRKQ15262 1439 aa18.33■□□□□ 0.53
CAPN1-202ENST00000524773 CDK11AQ9UQ88 783 aaPredicted RBP18.33■□□□□ 0.52
CAPN1-202ENST00000524773 B4GALNT3Q6L9W6 998 aa18.32■□□□□ 0.52
CAPN1-202ENST00000524773 ERICH6Q7L0X2 663 aa18.32■□□□□ 0.52
CAPN1-202ENST00000524773 FHAD1B1AJZ9 1412 aa18.32■□□□□ 0.52
CAPN1-202ENST00000524773 FOXD1Q16676 465 aa18.32■□□□□ 0.52
CAPN1-202ENST00000524773 GAPVD1Q14C86 1478 aa18.32■□□□□ 0.52
CAPN1-202ENST00000524773 ARID3CA6NKF2 412 aa18.31■□□□□ 0.52
CAPN1-202ENST00000524773 HSPA5P11021 654 aaKnown RBP18.3■□□□□ 0.52
CAPN1-202ENST00000524773 WASHC2AQ641Q2 1341 aa18.3■□□□□ 0.52
CAPN1-202ENST00000524773 CUL7Q14999 1698 aa18.3■□□□□ 0.52
CAPN1-202ENST00000524773 AQRO60306 1485 aaKnown RBP eCLIP18.3■□□□□ 0.528e-7■■■■□ 24.7
CAPN1-202ENST00000524773 ABCA5Q8WWZ7 1642 aa18.29■□□□□ 0.52
CAPN1-202ENST00000524773 ERCC6Q03468 1493 aa18.29■□□□□ 0.52
CAPN1-202ENST00000524773 TARBP1Q13395 1621 aaKnown RBP18.29■□□□□ 0.52
CAPN1-202ENST00000524773 TIMELESSQ9UNS1 1208 aa18.29■□□□□ 0.52
CAPN1-202ENST00000524773 CCDC18Q5T9S5 1454 aa18.28■□□□□ 0.52
CAPN1-202ENST00000524773 C11orf95C9JLR9 678 aaPredicted RBP18.26■□□□□ 0.51
CAPN1-202ENST00000524773 MTUS2Q5JR59 1369 aa18.24■□□□□ 0.51
CAPN1-202ENST00000524773 WDR62O43379 1518 aa18.23■□□□□ 0.51
CAPN1-202ENST00000524773 FGD6Q6ZV73 1430 aa18.23■□□□□ 0.51
CAPN1-202ENST00000524773 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.21■□□□□ 0.5
CAPN1-202ENST00000524773 CFAP43Q8NDM7 1665 aa18.2■□□□□ 0.5
CAPN1-202ENST00000524773 SLC24A1O60721 1099 aa18.19■□□□□ 0.5
CAPN1-202ENST00000524773 POLR3GLQ9BT43 218 aa18.18■□□□□ 0.5
CAPN1-202ENST00000524773 NBR1Q14596 966 aa18.18■□□□□ 0.5
CAPN1-202ENST00000524773 MRS2Q9HD23 443 aa18.18■□□□□ 0.5
CAPN1-202ENST00000524773 IFT140Q96RY7 1462 aa18.18■□□□□ 0.5
CAPN1-202ENST00000524773 FANCIQ9NVI1 1328 aa18.17■□□□□ 0.5
CAPN1-202ENST00000524773 EFCAB5A4FU69 1503 aa18.16■□□□□ 0.5
CAPN1-202ENST00000524773 UACAQ9BZF9 1416 aa18.16■□□□□ 0.5
CAPN1-202ENST00000524773 NAIPQ13075 1403 aa18.15■□□□□ 0.5
CAPN1-202ENST00000524773 FYCO1Q9BQS8 1478 aa18.15■□□□□ 0.5
CAPN1-202ENST00000524773 L3MBTL2Q969R5 705 aa18.14■□□□□ 0.49
CAPN1-202ENST00000524773 PPP4R2Q9NY27 417 aa18.14■□□□□ 0.49
CAPN1-202ENST00000524773 CTTNBP2Q8WZ74 1663 aa18.14■□□□□ 0.49
CAPN1-202ENST00000524773 PBRM1Q86U86 1689 aa18.13■□□□□ 0.49
CAPN1-202ENST00000524773 CASKIN1Q8WXD9 1431 aa18.13■□□□□ 0.49
CAPN1-202ENST00000524773 EIF4G2P78344 907 aaKnown RBP eCLIP18.13■□□□□ 0.49
CAPN1-202ENST00000524773 ZNF608Q9ULD9 1512 aaPredicted RBP18.13■□□□□ 0.49
CAPN1-202ENST00000524773 HFM1A2PYH4 1435 aa18.12■□□□□ 0.49
CAPN1-202ENST00000524773 KDM5BQ9UGL1 1544 aa18.12■□□□□ 0.49
CAPN1-202ENST00000524773 THOC2Q8NI27 1593 aaKnown RBP18.12■□□□□ 0.49
CAPN1-202ENST00000524773 GRIN2BQ13224 1484 aa18.12■□□□□ 0.49
CAPN1-202ENST00000524773 PTPN23Q9H3S7 1636 aa18.11■□□□□ 0.49
CAPN1-202ENST00000524773 PAK3O75914 559 aaPredicted RBP18.11■□□□□ 0.49
CAPN1-202ENST00000524773 PRKRIP1Q9H875 184 aaPredicted RBP18.1■□□□□ 0.49
CAPN1-202ENST00000524773 DEKP35659 375 aaKnown RBP18.07■□□□□ 0.48
CAPN1-202ENST00000524773 NBPF8Q3BBV2 869 aa18.07■□□□□ 0.48
CAPN1-202ENST00000524773 NCOA2Q15596 1464 aa18.07■□□□□ 0.48
CAPN1-202ENST00000524773 FMN1Q68DA7 1419 aa18.06■□□□□ 0.48
CAPN1-202ENST00000524773 ZNF326Q5BKZ1 582 aaKnown RBP18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms