RNA–Protein interactions for RNA: ENST00000519312.5

CDKL3-203, Transcript of cyclin dependent kinase like 3, humanhuman

TSL 1 (best)

Gene CDKL3, Length 1,198 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL3-203ENST00000519312 PIP4P2Q8N4L2 257 aa14.89□□□□□ -0.03
CDKL3-203ENST00000519312 SPDYE1Q8NFV5 336 aaPredicted RBP14.88□□□□□ -0.03
CDKL3-203ENST00000519312 CLEC11AQ9Y240 323 aa14.87□□□□□ -0.03
CDKL3-203ENST00000519312 CEP164Q9UPV0 1460 aa14.87□□□□□ -0.03
CDKL3-203ENST00000519312 WIZO95785 1651 aa14.87□□□□□ -0.03
CDKL3-203ENST00000519312 CFTRP13569 1480 aa14.82□□□□□ -0.04
CDKL3-203ENST00000519312 FXR2P51116 673 aaKnown RBP eCLIP14.82□□□□□ -0.04
CDKL3-203ENST00000519312 FANCD2Q9BXW9 1451 aa14.82□□□□□ -0.04
CDKL3-203ENST00000519312 SPDYE4A6NLX3 237 aa14.78□□□□□ -0.04
CDKL3-203ENST00000519312 TRIM41Q8WV44 630 aa14.76□□□□□ -0.05
CDKL3-203ENST00000519312 TOP2AP11388 1531 aaKnown RBP14.74□□□□□ -0.05
CDKL3-203ENST00000519312 URB2Q14146 1524 aaKnown RBP14.71□□□□□ -0.05
CDKL3-203ENST00000519312 RSF1Q96T23 1441 aaPredicted RBP14.71□□□□□ -0.05
CDKL3-203ENST00000519312 PRDM2Q13029 1718 aa14.66□□□□□ -0.06
CDKL3-203ENST00000519312 PRKAR2AP13861 404 aaKnown RBP14.65□□□□□ -0.06
CDKL3-203ENST00000519312 PRR29P0C7W0 189 aa14.64□□□□□ -0.07
CDKL3-203ENST00000519312 IFT140Q96RY7 1462 aa14.6□□□□□ -0.07
CDKL3-203ENST00000519312 CHADLQ6NUI6 762 aa14.57□□□□□ -0.08
CDKL3-203ENST00000519312 RIMBP3CA6NJZ7 1639 aa14.56□□□□□ -0.08
CDKL3-203ENST00000519312 RIMBP3BA6NNM3 1639 aa14.56□□□□□ -0.08
CDKL3-203ENST00000519312 RIMBP3Q9UFD9 1639 aa14.56□□□□□ -0.08
CDKL3-203ENST00000519312 ZNF608Q9ULD9 1512 aaPredicted RBP14.54□□□□□ -0.08
CDKL3-203ENST00000519312 ABCC8Q09428 1581 aa14.53□□□□□ -0.08
CDKL3-203ENST00000519312 HAX1O00165 279 aa14.53□□□□□ -0.08
CDKL3-203ENST00000519312 TOPBP1Q92547 1522 aa14.52□□□□□ -0.08
CDKL3-203ENST00000519312 CCDC88BA6NC98 1476 aa14.52□□□□□ -0.08
CDKL3-203ENST00000519312 ARHGEF11O15085 1522 aa14.51□□□□□ -0.09
CDKL3-203ENST00000519312 EIF4G3O43432 1585 aaKnown RBP14.49□□□□□ -0.09
CDKL3-203ENST00000519312 DNMBPQ6XZF7 1577 aa14.48□□□□□ -0.09
CDKL3-203ENST00000519312 STAG3Q9UJ98 1225 aa14.48□□□□□ -0.09
CDKL3-203ENST00000519312 PROM2Q8N271 834 aa14.44□□□□□ -0.1
CDKL3-203ENST00000519312 TARBP1Q13395 1621 aaKnown RBP14.44□□□□□ -0.1
CDKL3-203ENST00000519312 EVX2Q03828 476 aa14.41□□□□□ -0.1
CDKL3-203ENST00000519312 SP7Q8TDD2 431 aaPredicted RBP14.41□□□□□ -0.1
CDKL3-203ENST00000519312 CHD1O14646 1710 aa14.38□□□□□ -0.11
CDKL3-203ENST00000519312 FKBP8Q14318 412 aa14.37□□□□□ -0.11
CDKL3-203ENST00000519312 POLA1P09884 1462 aaPredicted RBP14.37□□□□□ -0.11
CDKL3-203ENST00000519312 WDR97A6NE52 1622 aa14.37□□□□□ -0.11
CDKL3-203ENST00000519312 CREBZFQ9NS37 354 aa14.36□□□□□ -0.11
CDKL3-203ENST00000519312 FARP1Q9Y4F1 1045 aaPredicted RBP14.36□□□□□ -0.11
CDKL3-203ENST00000519312 ARAP1Q96P48 1450 aa14.36□□□□□ -0.11
CDKL3-203ENST00000519312 AQRO60306 1485 aaKnown RBP eCLIP14.35□□□□□ -0.11
CDKL3-203ENST00000519312 C19orf67A6NJJ6 358 aa14.33□□□□□ -0.12
CDKL3-203ENST00000519312 CYB5RLQ6IPT4 315 aa14.3□□□□□ -0.12
CDKL3-203ENST00000519312 CLASP1Q7Z460 1538 aa14.29□□□□□ -0.12
CDKL3-203ENST00000519312 SOGA1O94964 1423 aa14.26□□□□□ -0.13
CDKL3-203ENST00000519312 MAGI1Q96QZ7 1491 aaPredicted RBP14.25□□□□□ -0.13
CDKL3-203ENST00000519312 RAD54L2Q9Y4B4 1467 aa14.25□□□□□ -0.13
CDKL3-203ENST00000519312 SNAPC4Q5SXM2 1469 aa14.25□□□□□ -0.13
CDKL3-203ENST00000519312 FGD5Q6ZNL6 1462 aa14.23□□□□□ -0.13
CDKL3-203ENST00000519312 SYNJ1O43426 1573 aa14.22□□□□□ -0.13
CDKL3-203ENST00000519312 TDRD9Q8NDG6 1382 aaKnown RBP14.22□□□□□ -0.13
CDKL3-203ENST00000519312 GRIN2BQ13224 1484 aa14.2□□□□□ -0.14
CDKL3-203ENST00000519312 CD44P16070 742 aaKnown RBP14.2□□□□□ -0.14
CDKL3-203ENST00000519312 CUX1P39880 1505 aa14.2□□□□□ -0.14
CDKL3-203ENST00000519312 SYNJ2O15056 1496 aa14.19□□□□□ -0.14
CDKL3-203ENST00000519312 MNX1P50219 401 aaPredicted RBP14.15□□□□□ -0.14
CDKL3-203ENST00000519312 CHMP7Q8WUX9 453 aaPredicted RBP14.13□□□□□ -0.15
CDKL3-203ENST00000519312 ABCA5Q8WWZ7 1642 aa14.12□□□□□ -0.15
CDKL3-203ENST00000519312 ABCA10Q8WWZ4 1543 aa14.11□□□□□ -0.15
CDKL3-203ENST00000519312 PBRM1Q86U86 1689 aa14.11□□□□□ -0.15
CDKL3-203ENST00000519312 GAPVD1Q14C86 1478 aa14.11□□□□□ -0.15
CDKL3-203ENST00000519312 MIER1Q8N108 512 aa14.07□□□□□ -0.16
CDKL3-203ENST00000519312 GABBR2O75899 941 aa14.06□□□□□ -0.16
CDKL3-203ENST00000519312 NPM1P06748 294 aaKnown RBP eCLIP14.06□□□□□ -0.16
CDKL3-203ENST00000519312 ZRANB1Q9UGI0 708 aa14.05□□□□□ -0.16
CDKL3-203ENST00000519312 GRIN2AQ12879 1464 aa14.02□□□□□ -0.16
CDKL3-203ENST00000519312 NUP160Q12769 1436 aa14.02□□□□□ -0.16
CDKL3-203ENST00000519312 ADAMTS12P58397 1594 aa14□□□□□ -0.17
CDKL3-203ENST00000519312 PLEKHG5O94827 1062 aa13.99□□□□□ -0.17
CDKL3-203ENST00000519312 PLCD3Q8N3E9 789 aa13.99□□□□□ -0.17
CDKL3-203ENST00000519312 SHROOM2Q13796 1616 aa13.98□□□□□ -0.17
CDKL3-203ENST00000519312 CEP170Q5SW79 1584 aa13.97□□□□□ -0.17
CDKL3-203ENST00000519312 PAK3O75914 559 aaPredicted RBP13.97□□□□□ -0.17
CDKL3-203ENST00000519312 ZNF579Q8NAF0 562 aaKnown RBP13.97□□□□□ -0.17
CDKL3-203ENST00000519312 WRNQ14191 1432 aaPredicted RBP eCLIP13.97□□□□□ -0.17
CDKL3-203ENST00000519312 ERCC6L2Q5T890 1561 aa13.96□□□□□ -0.17
CDKL3-203ENST00000519312 BIVM-ERCC5R4GMW8 1640 aa13.96□□□□□ -0.17
CDKL3-203ENST00000519312 TOP2BQ02880 1626 aa13.94□□□□□ -0.18
CDKL3-203ENST00000519312 FHAD1B1AJZ9 1412 aa13.94□□□□□ -0.18
CDKL3-203ENST00000519312 ERICH3Q5RHP9 1530 aa13.94□□□□□ -0.18
CDKL3-203ENST00000519312 FBXO3Q9UK99 471 aa13.93□□□□□ -0.18
CDKL3-203ENST00000519312 PHF12Q96QT6 1004 aa13.91□□□□□ -0.18
CDKL3-203ENST00000519312 TSPYL2Q9H2G4 693 aaPredicted RBP13.89□□□□□ -0.19
CDKL3-203ENST00000519312 CLCN6P51797 869 aa13.85□□□□□ -0.19
CDKL3-203ENST00000519312 KIF13AQ9H1H9 1805 aa13.84□□□□□ -0.19
CDKL3-203ENST00000519312 GALR2O43603 387 aaPredicted RBP13.83□□□□□ -0.2
CDKL3-203ENST00000519312 RASEFQ8IZ41 740 aa13.83□□□□□ -0.2
CDKL3-203ENST00000519312 RUSC2Q8N2Y8 1516 aa13.82□□□□□ -0.2
CDKL3-203ENST00000519312 ZBTB47Q9UFB7 747 aaPredicted RBP13.82□□□□□ -0.2
CDKL3-203ENST00000519312 PRG4Q92954 1404 aaPredicted RBP13.81□□□□□ -0.2
CDKL3-203ENST00000519312 MAPKBP1O60336 1514 aa13.8□□□□□ -0.2
CDKL3-203ENST00000519312 VASPP50552 380 aaPredicted RBP13.8□□□□□ -0.2
CDKL3-203ENST00000519312 POTEIP0CG38 1075 aa13.79□□□□□ -0.2
CDKL3-203ENST00000519312 CCDC61Q9Y6R9 512 aa13.78□□□□□ -0.2
CDKL3-203ENST00000519312 ABCC10Q5T3U5 1492 aa13.78□□□□□ -0.2
CDKL3-203ENST00000519312 JPH4Q96JJ6 628 aa13.77□□□□□ -0.21
CDKL3-203ENST00000519312 NUBP1P53384 320 aa13.76□□□□□ -0.21
CDKL3-203ENST00000519312 DIP2BQ9P265 1576 aa13.75□□□□□ -0.21
CDKL3-203ENST00000519312 DCBLD2Q96PD2 775 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms