RNA–Protein interactions for RNA: ENST00000519060.6

MSR1-210, Transcript of macrophage scavenger receptor 1, humanhuman

TSL 5

Gene MSR1, Length 1,009 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSR1-210ENST00000519060 TOPBP1Q92547 1522 aa17.34■□□□□ 0.37
MSR1-210ENST00000519060 RIMBP3CA6NJZ7 1639 aa17.29■□□□□ 0.36
MSR1-210ENST00000519060 RIMBP3BA6NNM3 1639 aa17.29■□□□□ 0.36
MSR1-210ENST00000519060 RIMBP3Q9UFD9 1639 aa17.29■□□□□ 0.36
MSR1-210ENST00000519060 ABCC8Q09428 1581 aa17.28■□□□□ 0.36
MSR1-210ENST00000519060 CYB5RLQ6IPT4 315 aa17.28■□□□□ 0.36
MSR1-210ENST00000519060 PRDM2Q13029 1718 aa17.27■□□□□ 0.36
MSR1-210ENST00000519060 AQRO60306 1485 aaKnown RBP eCLIP17.26■□□□□ 0.35
MSR1-210ENST00000519060 ARHGEF11O15085 1522 aa17.24■□□□□ 0.35
MSR1-210ENST00000519060 DNMBPQ6XZF7 1577 aa17.2■□□□□ 0.34
MSR1-210ENST00000519060 EIF4G3O43432 1585 aaKnown RBP17.17■□□□□ 0.34
MSR1-210ENST00000519060 TARBP1Q13395 1621 aaKnown RBP17.16■□□□□ 0.34
MSR1-210ENST00000519060 TDRD9Q8NDG6 1382 aaKnown RBP17.15■□□□□ 0.34
MSR1-210ENST00000519060 POLA1P09884 1462 aaPredicted RBP17.15■□□□□ 0.34
MSR1-210ENST00000519060 SOGA1O94964 1423 aa17.14■□□□□ 0.33
MSR1-210ENST00000519060 RAD54L2Q9Y4B4 1467 aa17.14■□□□□ 0.33
MSR1-210ENST00000519060 ARAP1Q96P48 1450 aa17.07■□□□□ 0.32
MSR1-210ENST00000519060 CHMP7Q8WUX9 453 aaPredicted RBP17.07■□□□□ 0.32
MSR1-210ENST00000519060 CHD1O14646 1710 aa17.07■□□□□ 0.32
MSR1-210ENST00000519060 FKBP8Q14318 412 aa17.02■□□□□ 0.32
MSR1-210ENST00000519060 FGD5Q6ZNL6 1462 aa17.01■□□□□ 0.31
MSR1-210ENST00000519060 SPDYE4A6NLX3 237 aa17■□□□□ 0.31
MSR1-210ENST00000519060 SNAPC4Q5SXM2 1469 aa16.99■□□□□ 0.31
MSR1-210ENST00000519060 SPDYE2BA6NHP3 402 aa16.99■□□□□ 0.31
MSR1-210ENST00000519060 SPDYE6P0CI01 402 aa16.99■□□□□ 0.31
MSR1-210ENST00000519060 SPDYE2Q495Y8 402 aa16.99■□□□□ 0.31
MSR1-210ENST00000519060 RBM42Q9BTD8 480 aaKnown RBP16.98■□□□□ 0.31
MSR1-210ENST00000519060 CUX1P39880 1505 aa16.97■□□□□ 0.31
MSR1-210ENST00000519060 GRIN2BQ13224 1484 aa16.95■□□□□ 0.3
MSR1-210ENST00000519060 MAGI1Q96QZ7 1491 aaPredicted RBP16.93■□□□□ 0.3
MSR1-210ENST00000519060 ZNF692Q9BU19 519 aaPredicted RBP16.93■□□□□ 0.3
MSR1-210ENST00000519060 CLASP1Q7Z460 1538 aa16.92■□□□□ 0.3
MSR1-210ENST00000519060 SYNJ2O15056 1496 aa16.9■□□□□ 0.3
MSR1-210ENST00000519060 WDR97A6NE52 1622 aa16.89■□□□□ 0.29
MSR1-210ENST00000519060 GAPVD1Q14C86 1478 aa16.88■□□□□ 0.29
MSR1-210ENST00000519060 SYNJ1O43426 1573 aa16.88■□□□□ 0.29
MSR1-210ENST00000519060 SUPT5HO00267 1087 aaKnown RBP16.87■□□□□ 0.29
MSR1-210ENST00000519060 SSUH2Q9Y2M2 353 aa16.86■□□□□ 0.29
MSR1-210ENST00000519060 ABCA10Q8WWZ4 1543 aa16.8■□□□□ 0.28
MSR1-210ENST00000519060 AKT1S1Q96B36 256 aa16.78■□□□□ 0.28
MSR1-210ENST00000519060 WRNQ14191 1432 aaPredicted RBP eCLIP16.75■□□□□ 0.27
MSR1-210ENST00000519060 PBRM1Q86U86 1689 aa16.74■□□□□ 0.27
MSR1-210ENST00000519060 ABCA5Q8WWZ7 1642 aa16.73■□□□□ 0.27
MSR1-210ENST00000519060 PROM2Q8N271 834 aa16.72■□□□□ 0.27
MSR1-210ENST00000519060 GRIN2AQ12879 1464 aa16.71■□□□□ 0.27
MSR1-210ENST00000519060 ERCC6L2Q5T890 1561 aa16.7■□□□□ 0.26
MSR1-210ENST00000519060 NUP160Q12769 1436 aa16.68■□□□□ 0.26
MSR1-210ENST00000519060 FHAD1B1AJZ9 1412 aa16.66■□□□□ 0.26
MSR1-210ENST00000519060 JPH4Q96JJ6 628 aa16.64■□□□□ 0.25
MSR1-210ENST00000519060 CEP170Q5SW79 1584 aa16.64■□□□□ 0.25
MSR1-210ENST00000519060 TOP2BQ02880 1626 aa16.61■□□□□ 0.25
MSR1-210ENST00000519060 REM2Q8IYK8 340 aaPredicted RBP16.61■□□□□ 0.25
MSR1-210ENST00000519060 ADAMTS12P58397 1594 aa16.6■□□□□ 0.25
MSR1-210ENST00000519060 PRG4Q92954 1404 aaPredicted RBP16.58■□□□□ 0.24
MSR1-210ENST00000519060 BIVM-ERCC5R4GMW8 1640 aa16.57■□□□□ 0.24
MSR1-210ENST00000519060 ERICH3Q5RHP9 1530 aa16.57■□□□□ 0.24
MSR1-210ENST00000519060 SHROOM2Q13796 1616 aa16.55■□□□□ 0.24
MSR1-210ENST00000519060 NPM1P06748 294 aaKnown RBP eCLIP16.5■□□□□ 0.23
MSR1-210ENST00000519060 FAM69CQ0P6D2 419 aa16.5■□□□□ 0.23
MSR1-210ENST00000519060 SPDYE1Q8NFV5 336 aaPredicted RBP16.49■□□□□ 0.23
MSR1-210ENST00000519060 IGF1RP08069 1367 aa16.46■□□□□ 0.23
MSR1-210ENST00000519060 STAG3Q9UJ98 1225 aa16.45■□□□□ 0.22
MSR1-210ENST00000519060 FBXO3Q9UK99 471 aa16.44■□□□□ 0.22
MSR1-210ENST00000519060 CLEC11AQ9Y240 323 aa16.41■□□□□ 0.22
MSR1-210ENST00000519060 ABCC10Q5T3U5 1492 aa16.41■□□□□ 0.22
MSR1-210ENST00000519060 KIF13AQ9H1H9 1805 aa16.4■□□□□ 0.22
MSR1-210ENST00000519060 PITPNM1O00562 1244 aa16.4■□□□□ 0.22
MSR1-210ENST00000519060 KIAA0586Q9BVV6 1533 aa16.39■□□□□ 0.21
MSR1-210ENST00000519060 RUSC2Q8N2Y8 1516 aa16.36■□□□□ 0.21
MSR1-210ENST00000519060 KIF27Q86VH2 1401 aa16.36■□□□□ 0.21
MSR1-210ENST00000519060 TTBK1Q5TCY1 1321 aaPredicted RBP16.34■□□□□ 0.21
MSR1-210ENST00000519060 MAPKBP1O60336 1514 aa16.33■□□□□ 0.2
MSR1-210ENST00000519060 PTPRGP23470 1445 aa16.32■□□□□ 0.2
MSR1-210ENST00000519060 CARMIL1Q5VZK9 1371 aa16.32■□□□□ 0.2
MSR1-210ENST00000519060 ADCY10Q96PN6 1610 aa16.32■□□□□ 0.2
MSR1-210ENST00000519060 KDM4FA0A1W2PPD8 638 aa16.3■□□□□ 0.2
MSR1-210ENST00000519060 PRR29P0C7W0 189 aa16.28■□□□□ 0.2
MSR1-210ENST00000519060 DIP2BQ9P265 1576 aa16.28■□□□□ 0.2
MSR1-210ENST00000519060 CHRDL2Q6WN34 429 aa16.25■□□□□ 0.19
MSR1-210ENST00000519060 TNIKQ9UKE5 1360 aa16.25■□□□□ 0.19
MSR1-210ENST00000519060 CARMIL2Q6F5E8 1435 aa16.22■□□□□ 0.19
MSR1-210ENST00000519060 CUL7Q14999 1698 aa16.22■□□□□ 0.19
MSR1-210ENST00000519060 TSPOAP1O95153 1857 aa16.19■□□□□ 0.18
MSR1-210ENST00000519060 VASPP50552 380 aaPredicted RBP16.19■□□□□ 0.18
MSR1-210ENST00000519060 ABCC2Q92887 1545 aa16.19■□□□□ 0.18
MSR1-210ENST00000519060 KDM6BO15054 1643 aa16.18■□□□□ 0.18
MSR1-210ENST00000519060 ASXL2Q76L83 1435 aa16.18■□□□□ 0.18
MSR1-210ENST00000519060 PLB1Q6P1J6 1458 aa16.16■□□□□ 0.18
MSR1-210ENST00000519060 UACAQ9BZF9 1416 aa16.15■□□□□ 0.18
MSR1-210ENST00000519060 UHRF1BP1LA0JNW5 1464 aa16.14■□□□□ 0.17
MSR1-210ENST00000519060 MIER1Q8N108 512 aa16.13■□□□□ 0.17
MSR1-210ENST00000519060 DISP1Q96F81 1524 aa16.13■□□□□ 0.17
MSR1-210ENST00000519060 IQGAP2Q13576 1575 aa16.12■□□□□ 0.17
MSR1-210ENST00000519060 FXR2P51116 673 aaKnown RBP eCLIP16.11■□□□□ 0.17
MSR1-210ENST00000519060 PLCD3Q8N3E9 789 aa16.1■□□□□ 0.17
MSR1-210ENST00000519060 COL17A1Q9UMD9 1497 aaPredicted RBP16.1■□□□□ 0.17
MSR1-210ENST00000519060 GLI2P10070 1586 aa16.09■□□□□ 0.17
MSR1-210ENST00000519060 RAPGEF2Q9Y4G8 1499 aa16.09■□□□□ 0.17
MSR1-210ENST00000519060 CREBZFQ9NS37 354 aa16.07■□□□□ 0.16
MSR1-210ENST00000519060 KDM5BQ9UGL1 1544 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms