RNA–Protein interactions for RNA: ENST00000515533.1

CDC42SE2-212, Transcript of CDC42 small effector 2, humanhuman

TSL 4

Gene CDC42SE2, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE2-212ENST00000515533 SPDYE2Q495Y8 402 aa16.81■□□□□ 0.28
CDC42SE2-212ENST00000515533 TOP2AP11388 1531 aaKnown RBP16.79■□□□□ 0.28
CDC42SE2-212ENST00000515533 FANCD2Q9BXW9 1451 aa16.79■□□□□ 0.28
CDC42SE2-212ENST00000515533 PRDM2Q13029 1718 aa16.79■□□□□ 0.28
CDC42SE2-212ENST00000515533 RSF1Q96T23 1441 aaPredicted RBP16.79■□□□□ 0.28
CDC42SE2-212ENST00000515533 CFTRP13569 1480 aa16.76■□□□□ 0.27
CDC42SE2-212ENST00000515533 EVX2Q03828 476 aa16.75■□□□□ 0.27
CDC42SE2-212ENST00000515533 MKRN4PQ13434 485 aaPredicted RBP16.68■□□□□ 0.26
CDC42SE2-212ENST00000515533 URB2Q14146 1524 aaKnown RBP16.64■□□□□ 0.25
CDC42SE2-212ENST00000515533 TRIM41Q8WV44 630 aa16.61■□□□□ 0.25
CDC42SE2-212ENST00000515533 SPDYE1Q8NFV5 336 aaPredicted RBP16.58■□□□□ 0.24
CDC42SE2-212ENST00000515533 CLEC11AQ9Y240 323 aa16.57■□□□□ 0.24
CDC42SE2-212ENST00000515533 SSUH2Q9Y2M2 353 aa16.57■□□□□ 0.24
CDC42SE2-212ENST00000515533 ZNF692Q9BU19 519 aaPredicted RBP16.56■□□□□ 0.24
CDC42SE2-212ENST00000515533 CCDC88BA6NC98 1476 aa16.55■□□□□ 0.24
CDC42SE2-212ENST00000515533 PRKAR2AP13861 404 aaKnown RBP16.54■□□□□ 0.24
CDC42SE2-212ENST00000515533 IFT140Q96RY7 1462 aa16.48■□□□□ 0.23
CDC42SE2-212ENST00000515533 TOPBP1Q92547 1522 aa16.46■□□□□ 0.23
CDC42SE2-212ENST00000515533 ABCC8Q09428 1581 aa16.45■□□□□ 0.22
CDC42SE2-212ENST00000515533 ZNF608Q9ULD9 1512 aaPredicted RBP16.44■□□□□ 0.22
CDC42SE2-212ENST00000515533 DNMBPQ6XZF7 1577 aa16.43■□□□□ 0.22
CDC42SE2-212ENST00000515533 EIF4G3O43432 1585 aaKnown RBP16.43■□□□□ 0.22
CDC42SE2-212ENST00000515533 LHX8Q68G74 356 aa16.4■□□□□ 0.22
CDC42SE2-212ENST00000515533 RIMBP3CA6NJZ7 1639 aa16.39■□□□□ 0.21
CDC42SE2-212ENST00000515533 RIMBP3BA6NNM3 1639 aa16.39■□□□□ 0.21
CDC42SE2-212ENST00000515533 RIMBP3Q9UFD9 1639 aa16.39■□□□□ 0.21
CDC42SE2-212ENST00000515533 CHD1O14646 1710 aa16.36■□□□□ 0.21
CDC42SE2-212ENST00000515533 C19orf67A6NJJ6 358 aa16.36■□□□□ 0.21
CDC42SE2-212ENST00000515533 TARBP1Q13395 1621 aaKnown RBP16.35■□□□□ 0.21
CDC42SE2-212ENST00000515533 ARHGEF11O15085 1522 aa16.3■□□□□ 0.2
CDC42SE2-212ENST00000515533 POLA1P09884 1462 aaPredicted RBP16.29■□□□□ 0.2
CDC42SE2-212ENST00000515533 CHADLQ6NUI6 762 aa16.29■□□□□ 0.2
CDC42SE2-212ENST00000515533 AQRO60306 1485 aaKnown RBP eCLIP16.28■□□□□ 0.2
CDC42SE2-212ENST00000515533 PRR29P0C7W0 189 aa16.25■□□□□ 0.19
CDC42SE2-212ENST00000515533 GABBR2O75899 941 aa16.23■□□□□ 0.19
CDC42SE2-212ENST00000515533 WDR97A6NE52 1622 aa16.22■□□□□ 0.19
CDC42SE2-212ENST00000515533 RAD54L2Q9Y4B4 1467 aa16.21■□□□□ 0.19
CDC42SE2-212ENST00000515533 SOGA1O94964 1423 aa16.19■□□□□ 0.18
CDC42SE2-212ENST00000515533 FGD5Q6ZNL6 1462 aa16.19■□□□□ 0.18
CDC42SE2-212ENST00000515533 TDRD9Q8NDG6 1382 aaKnown RBP16.16■□□□□ 0.18
CDC42SE2-212ENST00000515533 CUX1P39880 1505 aa16.16■□□□□ 0.18
CDC42SE2-212ENST00000515533 PLSCR2Q9NRY7 297 aa16.16■□□□□ 0.18
CDC42SE2-212ENST00000515533 CSRNP3Q8WYN3 585 aa16.15■□□□□ 0.18
CDC42SE2-212ENST00000515533 CYB5RLQ6IPT4 315 aa16.14■□□□□ 0.17
CDC42SE2-212ENST00000515533 SNAPC4Q5SXM2 1469 aa16.14■□□□□ 0.17
CDC42SE2-212ENST00000515533 EHMT2Q96KQ7 1210 aa16.13■□□□□ 0.17
CDC42SE2-212ENST00000515533 PBRM1Q86U86 1689 aa16.13■□□□□ 0.17
CDC42SE2-212ENST00000515533 ARAP1Q96P48 1450 aa16.11■□□□□ 0.17
CDC42SE2-212ENST00000515533 SYNJ1O43426 1573 aa16.11■□□□□ 0.17
CDC42SE2-212ENST00000515533 MAGI1Q96QZ7 1491 aaPredicted RBP16.1■□□□□ 0.17
CDC42SE2-212ENST00000515533 GRIN2BQ13224 1484 aa16.09■□□□□ 0.17
CDC42SE2-212ENST00000515533 CLASP1Q7Z460 1538 aa16.08■□□□□ 0.16
CDC42SE2-212ENST00000515533 CHMP7Q8WUX9 453 aaPredicted RBP16.07■□□□□ 0.16
CDC42SE2-212ENST00000515533 SYNJ2O15056 1496 aa16.04■□□□□ 0.16
CDC42SE2-212ENST00000515533 GAPVD1Q14C86 1478 aa16.03■□□□□ 0.16
CDC42SE2-212ENST00000515533 SUPT5HO00267 1087 aaKnown RBP16.02■□□□□ 0.16
CDC42SE2-212ENST00000515533 FARP1Q9Y4F1 1045 aaPredicted RBP16.02■□□□□ 0.16
CDC42SE2-212ENST00000515533 ABCA5Q8WWZ7 1642 aa16.01■□□□□ 0.15
CDC42SE2-212ENST00000515533 ABCA10Q8WWZ4 1543 aa15.99■□□□□ 0.15
CDC42SE2-212ENST00000515533 CD44P16070 742 aaKnown RBP15.99■□□□□ 0.15
CDC42SE2-212ENST00000515533 POTEIP0CG38 1075 aa15.97■□□□□ 0.15
CDC42SE2-212ENST00000515533 BIVM-ERCC5R4GMW8 1640 aa15.95■□□□□ 0.14
CDC42SE2-212ENST00000515533 TOP2BQ02880 1626 aa15.93■□□□□ 0.14
CDC42SE2-212ENST00000515533 WRNQ14191 1432 aaPredicted RBP eCLIP15.92■□□□□ 0.14
CDC42SE2-212ENST00000515533 ADAMTS12P58397 1594 aa15.9■□□□□ 0.14
CDC42SE2-212ENST00000515533 GRIN2AQ12879 1464 aa15.89■□□□□ 0.13
CDC42SE2-212ENST00000515533 CEP170Q5SW79 1584 aa15.84■□□□□ 0.13
CDC42SE2-212ENST00000515533 CLCN6P51797 869 aa15.82■□□□□ 0.12
CDC42SE2-212ENST00000515533 ERICH3Q5RHP9 1530 aa15.82■□□□□ 0.12
CDC42SE2-212ENST00000515533 NUP160Q12769 1436 aa15.81■□□□□ 0.12
CDC42SE2-212ENST00000515533 SHROOM2Q13796 1616 aa15.8■□□□□ 0.12
CDC42SE2-212ENST00000515533 ERCC6L2Q5T890 1561 aa15.8■□□□□ 0.12
CDC42SE2-212ENST00000515533 FHAD1B1AJZ9 1412 aa15.8■□□□□ 0.12
CDC42SE2-212ENST00000515533 CREBZFQ9NS37 354 aa15.8■□□□□ 0.12
CDC42SE2-212ENST00000515533 STAG3Q9UJ98 1225 aa15.8■□□□□ 0.12
CDC42SE2-212ENST00000515533 ZNF579Q8NAF0 562 aaKnown RBP15.74■□□□□ 0.11
CDC42SE2-212ENST00000515533 SPDYE4A6NLX3 237 aa15.73■□□□□ 0.11
CDC42SE2-212ENST00000515533 ZRANB1Q9UGI0 708 aa15.72■□□□□ 0.11
CDC42SE2-212ENST00000515533 KIF13AQ9H1H9 1805 aa15.69■□□□□ 0.1
CDC42SE2-212ENST00000515533 RUSC2Q8N2Y8 1516 aa15.68■□□□□ 0.1
CDC42SE2-212ENST00000515533 DCBLD2Q96PD2 775 aa15.68■□□□□ 0.1
CDC42SE2-212ENST00000515533 PRG4Q92954 1404 aaPredicted RBP15.67■□□□□ 0.1
CDC42SE2-212ENST00000515533 CUL7Q14999 1698 aa15.63■□□□□ 0.09
CDC42SE2-212ENST00000515533 JPH4Q96JJ6 628 aa15.63■□□□□ 0.09
CDC42SE2-212ENST00000515533 KIF27Q86VH2 1401 aa15.58■□□□□ 0.08
CDC42SE2-212ENST00000515533 GALR2O43603 387 aaPredicted RBP15.57■□□□□ 0.08
CDC42SE2-212ENST00000515533 ADCY10Q96PN6 1610 aa15.54■□□□□ 0.08
CDC42SE2-212ENST00000515533 KIAA0586Q9BVV6 1533 aa15.54■□□□□ 0.08
CDC42SE2-212ENST00000515533 NPM1P06748 294 aaKnown RBP eCLIP15.54■□□□□ 0.08
CDC42SE2-212ENST00000515533 OTUD5Q96G74 571 aa15.53■□□□□ 0.08
CDC42SE2-212ENST00000515533 MAPKBP1O60336 1514 aa15.53■□□□□ 0.08
CDC42SE2-212ENST00000515533 IGF1RP08069 1367 aa15.52■□□□□ 0.08
CDC42SE2-212ENST00000515533 PAK3O75914 559 aaPredicted RBP15.52■□□□□ 0.08
CDC42SE2-212ENST00000515533 TSPOAP1O95153 1857 aa15.51■□□□□ 0.07
CDC42SE2-212ENST00000515533 DIP2BQ9P265 1576 aa15.5■□□□□ 0.07
CDC42SE2-212ENST00000515533 MNX1P50219 401 aaPredicted RBP15.5■□□□□ 0.07
CDC42SE2-212ENST00000515533 ABCC10Q5T3U5 1492 aa15.49■□□□□ 0.07
CDC42SE2-212ENST00000515533 POTEMA6NI47 508 aa15.49■□□□□ 0.07
CDC42SE2-212ENST00000515533 PHF12Q96QT6 1004 aa15.49■□□□□ 0.07
CDC42SE2-212ENST00000515533 FAM69CQ0P6D2 419 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms