RNA–Protein interactions for RNA: ENST00000512068.1

HTT-209, Transcript of huntingtin, humanhuman

TSL 3

Gene HTT, Length 401 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HTT-209ENST00000512068 DNMBPQ6XZF7 1577 aa13.08□□□□□ -0.32
HTT-209ENST00000512068 SPDYE4A6NLX3 237 aa13.08□□□□□ -0.32
HTT-209ENST00000512068 KIF21AQ7Z4S6 1674 aa13.08□□□□□ -0.32
HTT-209ENST00000512068 SOGA1O94964 1423 aa13.05□□□□□ -0.32
HTT-209ENST00000512068 LOC105371045A0A1W2PR82 267 aa13.02□□□□□ -0.33
HTT-209ENST00000512068 FGD5Q6ZNL6 1462 aa13.02□□□□□ -0.33
HTT-209ENST00000512068 TOPBP1Q92547 1522 aa13.02□□□□□ -0.33
HTT-209ENST00000512068 ERCC6Q03468 1493 aa13.01□□□□□ -0.33
HTT-209ENST00000512068 KIF27Q86VH2 1401 aa12.99□□□□□ -0.33
HTT-209ENST00000512068 URB2Q14146 1524 aaKnown RBP12.98□□□□□ -0.33
HTT-209ENST00000512068 MRC2Q9UBG0 1479 aa12.97□□□□□ -0.33
HTT-209ENST00000512068 RUSC2Q8N2Y8 1516 aa12.97□□□□□ -0.33
HTT-209ENST00000512068 PROM2Q8N271 834 aa12.95□□□□□ -0.34
HTT-209ENST00000512068 CUX2O14529 1486 aa12.94□□□□□ -0.34
HTT-209ENST00000512068 POLA1P09884 1462 aaPredicted RBP12.94□□□□□ -0.34
HTT-209ENST00000512068 GOLGA3Q08378 1498 aa12.94□□□□□ -0.34
HTT-209ENST00000512068 OSCARQ8IYS5 282 aa12.94□□□□□ -0.34
HTT-209ENST00000512068 KIF21BO75037 1637 aa12.94□□□□□ -0.34
HTT-209ENST00000512068 SPDYE2BA6NHP3 402 aa12.91□□□□□ -0.34
HTT-209ENST00000512068 SPDYE6P0CI01 402 aa12.91□□□□□ -0.34
HTT-209ENST00000512068 SPDYE2Q495Y8 402 aa12.91□□□□□ -0.34
HTT-209ENST00000512068 UBTFP17480 764 aaKnown RBP12.9□□□□□ -0.34
HTT-209ENST00000512068 ABCA10Q8WWZ4 1543 aa12.89□□□□□ -0.35
HTT-209ENST00000512068 RAD54L2Q9Y4B4 1467 aa12.89□□□□□ -0.35
HTT-209ENST00000512068 WDR62O43379 1518 aa12.88□□□□□ -0.35
HTT-209ENST00000512068 ZNF692Q9BU19 519 aaPredicted RBP12.87□□□□□ -0.35
HTT-209ENST00000512068 WDR97A6NE52 1622 aa12.87□□□□□ -0.35
HTT-209ENST00000512068 ERICH3Q5RHP9 1530 aa12.86□□□□□ -0.35
HTT-209ENST00000512068 THOC2Q8NI27 1593 aaKnown RBP12.85□□□□□ -0.35
HTT-209ENST00000512068 TNIKQ9UKE5 1360 aa12.84□□□□□ -0.35
HTT-209ENST00000512068 SSUH2Q9Y2M2 353 aa12.84□□□□□ -0.35
HTT-209ENST00000512068 IFT140Q96RY7 1462 aa12.82□□□□□ -0.36
HTT-209ENST00000512068 CUL7Q14999 1698 aa12.82□□□□□ -0.36
HTT-209ENST00000512068 PRXQ9BXM0 1461 aa12.81□□□□□ -0.36
HTT-209ENST00000512068 RAPGEF2Q9Y4G8 1499 aa12.81□□□□□ -0.36
HTT-209ENST00000512068 TARBP1Q13395 1621 aaKnown RBP12.8□□□□□ -0.36
HTT-209ENST00000512068 ABCA5Q8WWZ7 1642 aa12.8□□□□□ -0.36
HTT-209ENST00000512068 GAPVD1Q14C86 1478 aa12.79□□□□□ -0.36
HTT-209ENST00000512068 FBXO3Q9UK99 471 aa12.79□□□□□ -0.36
HTT-209ENST00000512068 IGF1RP08069 1367 aa12.78□□□□□ -0.36
HTT-209ENST00000512068 CARMIL1Q5VZK9 1371 aa12.78□□□□□ -0.36
HTT-209ENST00000512068 CEP162Q5TB80 1403 aa12.78□□□□□ -0.36
HTT-209ENST00000512068 PBRM1Q86U86 1689 aa12.77□□□□□ -0.36
HTT-209ENST00000512068 TDRD9Q8NDG6 1382 aaKnown RBP12.77□□□□□ -0.37
HTT-209ENST00000512068 RBM42Q9BTD8 480 aaKnown RBP12.71□□□□□ -0.37
HTT-209ENST00000512068 GRIN2BQ13224 1484 aa12.71□□□□□ -0.38
HTT-209ENST00000512068 CLIP1P30622 1438 aa12.71□□□□□ -0.38
HTT-209ENST00000512068 EIF4G3O43432 1585 aaKnown RBP12.69□□□□□ -0.38
HTT-209ENST00000512068 AQRO60306 1485 aaKnown RBP eCLIP12.69□□□□□ -0.388e-7■■■■■ 28.7
HTT-209ENST00000512068 RANGAP1P46060 587 aaPredicted RBP12.68□□□□□ -0.38
HTT-209ENST00000512068 CTTNBP2Q8WZ74 1663 aa12.67□□□□□ -0.38
HTT-209ENST00000512068 ZNF608Q9ULD9 1512 aaPredicted RBP12.67□□□□□ -0.38
HTT-209ENST00000512068 ADAMTS12P58397 1594 aa12.66□□□□□ -0.38
HTT-209ENST00000512068 FHAD1B1AJZ9 1412 aa12.66□□□□□ -0.38
HTT-209ENST00000512068 SNAPC4Q5SXM2 1469 aa12.62□□□□□ -0.39
HTT-209ENST00000512068 MAGI1Q96QZ7 1491 aaPredicted RBP12.61□□□□□ -0.39
HTT-209ENST00000512068 AKT1S1Q96B36 256 aa12.61□□□□□ -0.39
HTT-209ENST00000512068 VASPP50552 380 aaPredicted RBP12.59□□□□□ -0.39
HTT-209ENST00000512068 VPS8Q8N3P4 1428 aa12.58□□□□□ -0.4
HTT-209ENST00000512068 STAG3Q9UJ98 1225 aa12.57□□□□□ -0.4
HTT-209ENST00000512068 EFCAB5A4FU69 1503 aa12.57□□□□□ -0.4
HTT-209ENST00000512068 SYNJ2O15056 1496 aa12.55□□□□□ -0.4
HTT-209ENST00000512068 CHMP7Q8WUX9 453 aaPredicted RBP12.55□□□□□ -0.4
HTT-209ENST00000512068 GRIN2AQ12879 1464 aa12.53□□□□□ -0.4
HTT-209ENST00000512068 ARAP1Q96P48 1450 aa12.53□□□□□ -0.4
HTT-209ENST00000512068 ARHGAP35Q9NRY4 1499 aa12.53□□□□□ -0.4
HTT-209ENST00000512068 IQGAP2Q13576 1575 aa12.53□□□□□ -0.4
HTT-209ENST00000512068 AMER1Q5JTC6 1135 aaPredicted RBP12.51□□□□□ -0.41
HTT-209ENST00000512068 TRIM26Q12899 539 aaPredicted RBP12.49□□□□□ -0.41
HTT-209ENST00000512068 REM2Q8IYK8 340 aaPredicted RBP12.48□□□□□ -0.41
HTT-209ENST00000512068 KIAA0586Q9BVV6 1533 aa12.47□□□□□ -0.41
HTT-209ENST00000512068 SAMD9Q5K651 1589 aa12.47□□□□□ -0.41
HTT-209ENST00000512068 P3H3Q8IVL6 736 aa12.46□□□□□ -0.41
HTT-209ENST00000512068 SPDYE1Q8NFV5 336 aaPredicted RBP12.46□□□□□ -0.41
HTT-209ENST00000512068 PCGF6Q9BYE7 350 aa12.46□□□□□ -0.41
HTT-209ENST00000512068 RTN4Q9NQC3 1192 aaKnown RBP12.46□□□□□ -0.41
HTT-209ENST00000512068 FHOD3Q2V2M9 1422 aa12.45□□□□□ -0.42
HTT-209ENST00000512068 FMN1Q68DA7 1419 aa12.45□□□□□ -0.42
HTT-209ENST00000512068 CHD1O14646 1710 aa12.45□□□□□ -0.42
HTT-209ENST00000512068 PPARGC1BQ86YN6 1023 aaKnown RBP12.45□□□□□ -0.42
HTT-209ENST00000512068 IFNLR1Q8IU57 520 aaPredicted RBP12.44□□□□□ -0.42
HTT-209ENST00000512068 CEP170Q5SW79 1584 aa12.43□□□□□ -0.42
HTT-209ENST00000512068 UGGT2Q9NYU1 1516 aa12.42□□□□□ -0.42
HTT-209ENST00000512068 TTBK1Q5TCY1 1321 aaPredicted RBP12.42□□□□□ -0.42
HTT-209ENST00000512068 ATP1B4Q9UN42 357 aaPredicted RBP12.42□□□□□ -0.42
HTT-209ENST00000512068 NUP160Q12769 1436 aa12.42□□□□□ -0.42
HTT-209ENST00000512068 PCF11O94913 1555 aaKnown RBP12.41□□□□□ -0.42
HTT-209ENST00000512068 FYCO1Q9BQS8 1478 aa12.4□□□□□ -0.42
HTT-209ENST00000512068 KIAA0556O60303 1618 aa12.39□□□□□ -0.43
HTT-209ENST00000512068 CARMIL2Q6F5E8 1435 aa12.38□□□□□ -0.43
HTT-209ENST00000512068 CASKIN1Q8WXD9 1431 aa12.37□□□□□ -0.43
HTT-209ENST00000512068 MIER1Q8N108 512 aa12.37□□□□□ -0.43
HTT-209ENST00000512068 PLCD3Q8N3E9 789 aa12.37□□□□□ -0.43
HTT-209ENST00000512068 CFAP43Q8NDM7 1665 aa12.37□□□□□ -0.43
HTT-209ENST00000512068 MAP3K1Q13233 1512 aa12.37□□□□□ -0.43
HTT-209ENST00000512068 TIAM1Q13009 1591 aa12.36□□□□□ -0.43
HTT-209ENST00000512068 HECW1Q76N89 1606 aa12.36□□□□□ -0.43
HTT-209ENST00000512068 CLEC11AQ9Y240 323 aa12.34□□□□□ -0.43
HTT-209ENST00000512068 JPH4Q96JJ6 628 aa12.33□□□□□ -0.44
HTT-209ENST00000512068 DISP1Q96F81 1524 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms