RNA–Protein interactions for RNA: ENST00000512068.1

HTT-209, Transcript of huntingtin, humanhuman

TSL 3

Gene HTT, Length 401 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HTT-209ENST00000512068 AEBP2Q6ZN18 517 aaPredicted RBP22.56■■□□□ 1.2
HTT-209ENST00000512068 CHIC1Q5VXU3 224 aa22.26■■□□□ 1.15
HTT-209ENST00000512068 PHF23Q9BUL5 403 aaPredicted RBP19.59■□□□□ 0.73
HTT-209ENST00000512068 SENP3Q9H4L4 574 aaPredicted RBP19.12■□□□□ 0.65
HTT-209ENST00000512068 PLPPR3Q6T4P5 718 aa18.18■□□□□ 0.5
HTT-209ENST00000512068 NISCHQ9Y2I1 1504 aa18.17■□□□□ 0.5
HTT-209ENST00000512068 FOXD1Q16676 465 aa17.71■□□□□ 0.43
HTT-209ENST00000512068 PPP6R1Q9UPN7 881 aa17.22■□□□□ 0.35
HTT-209ENST00000512068 ADRA2BP18089 450 aa17.19■□□□□ 0.34
HTT-209ENST00000512068 PIAS4Q8N2W9 510 aaPredicted RBP16.73■□□□□ 0.27
HTT-209ENST00000512068 MSH5O43196 834 aa16.26■□□□□ 0.19
HTT-209ENST00000512068 PPP4R3CPQ6ZMV5 832 aa16.02■□□□□ 0.16
HTT-209ENST00000512068 CCDC180Q9P1Z9 1646 aa15.95■□□□□ 0.14
HTT-209ENST00000512068 KCNA4P22459 653 aa15.89■□□□□ 0.13
HTT-209ENST00000512068 SCAF1Q9H7N4 1312 aaKnown RBP15.76■□□□□ 0.11
HTT-209ENST00000512068 NCBP3Q53F19 620 aaKnown RBP15.68■□□□□ 0.1
HTT-209ENST00000512068 CNKSR2Q8WXI2 1034 aa15.55■□□□□ 0.08
HTT-209ENST00000512068 MAPK8IP2Q13387 824 aaPredicted RBP15.53■□□□□ 0.08
HTT-209ENST00000512068 NPM3O75607 178 aaKnown RBP15.44■□□□□ 0.06
HTT-209ENST00000512068 DMRT2Q9Y5R5 561 aa15.3■□□□□ 0.04
HTT-209ENST00000512068 ZCCHC6Q5VYS8 1495 aaKnown RBP15.26■□□□□ 0.03
HTT-209ENST00000512068 RNF216Q9NWF9 866 aaPredicted RBP15.2■□□□□ 0.02
HTT-209ENST00000512068 SLC4A1APQ9BWU0 796 aaKnown RBP15.17■□□□□ 0.02
HTT-209ENST00000512068 DCAF8L2P0C7V8 631 aa15.09■□□□□ 0.01
HTT-209ENST00000512068 HOXD11P31277 338 aaPredicted RBP15.09■□□□□ 0.01
HTT-209ENST00000512068 DNAJC5BQ9UF47 199 aa15.07■□□□□ 0
HTT-209ENST00000512068 ABCC9O60706 1549 aa15.06■□□□□ 0
HTT-209ENST00000512068 DCAF1Q9Y4B6 1507 aa15.04■□□□□ -0
HTT-209ENST00000512068 EHMT2Q96KQ7 1210 aa14.95□□□□□ -0.02
HTT-209ENST00000512068 MYO15BQ96JP2 1530 aa14.88□□□□□ -0.03
HTT-209ENST00000512068 NACADO15069 1562 aa14.85□□□□□ -0.03
HTT-209ENST00000512068 SHROOM4Q9ULL8 1493 aa14.82□□□□□ -0.04
HTT-209ENST00000512068 RB1CC1Q8TDY2 1594 aa14.76□□□□□ -0.05
HTT-209ENST00000512068 CSRNP3Q8WYN3 585 aa14.74□□□□□ -0.05
HTT-209ENST00000512068 ZBTB22O15209 634 aa14.64□□□□□ -0.07
HTT-209ENST00000512068 SCRIBQ14160 1630 aa14.63□□□□□ -0.07
HTT-209ENST00000512068 FOXD4L1Q9NU39 408 aa14.57□□□□□ -0.08
HTT-209ENST00000512068 DCAF8L1A6NGE4 600 aa14.55□□□□□ -0.08
HTT-209ENST00000512068 SLC4A2P04920 1241 aa14.54□□□□□ -0.08
HTT-209ENST00000512068 UNC13AQ9UPW8 1703 aa14.41□□□□□ -0.1
HTT-209ENST00000512068 POTEDQ86YR6 584 aa14.4□□□□□ -0.1
HTT-209ENST00000512068 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.33□□□□□ -0.12
HTT-209ENST00000512068 MYCNP04198 464 aaPredicted RBP14.27□□□□□ -0.13
HTT-209ENST00000512068 SUPT5HO00267 1087 aaKnown RBP14.25□□□□□ -0.13
HTT-209ENST00000512068 BICRAQ9NZM4 1560 aa14.18□□□□□ -0.14
HTT-209ENST00000512068 PABPN1Q86U42 306 aaKnown RBP eCLIP14.16□□□□□ -0.14
HTT-209ENST00000512068 U3KPZ7 1027 aaPredicted RBP14.14□□□□□ -0.15
HTT-209ENST00000512068 ATXN8OSP0DMR3 200 aa14.1□□□□□ -0.15
HTT-209ENST00000512068 BAZ1AQ9NRL2 1556 aaPredicted RBP14.09□□□□□ -0.15
HTT-209ENST00000512068 CECR2Q9BXF3 1484 aa14.06□□□□□ -0.16
HTT-209ENST00000512068 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.06□□□□□ -0.16
HTT-209ENST00000512068 HNRNPUL2Q1KMD3 747 aaKnown RBP14.06□□□□□ -0.16
HTT-209ENST00000512068 RSF1Q96T23 1441 aaPredicted RBP14.05□□□□□ -0.16
HTT-209ENST00000512068 SAMD1Q6SPF0 538 aaPredicted RBP14.02□□□□□ -0.17
HTT-209ENST00000512068 SMARCA4P51532 1647 aa14.01□□□□□ -0.17
HTT-209ENST00000512068 MROH2BQ7Z745 1585 aa14.01□□□□□ -0.17
HTT-209ENST00000512068 RNF39Q9H2S5 420 aa13.96□□□□□ -0.17
HTT-209ENST00000512068 WIZO95785 1651 aa13.94□□□□□ -0.18
HTT-209ENST00000512068 ATF5Q9Y2D1 282 aaPredicted RBP13.86□□□□□ -0.19
HTT-209ENST00000512068 APLP2Q06481 763 aa13.85□□□□□ -0.19
HTT-209ENST00000512068 SMARCA2P51531 1590 aa13.83□□□□□ -0.2
HTT-209ENST00000512068 EIF4G1Q04637 1599 aaKnown RBP13.83□□□□□ -0.2
HTT-209ENST00000512068 TOP2AP11388 1531 aaKnown RBP13.82□□□□□ -0.2
HTT-209ENST00000512068 C1QBPQ07021 282 aaKnown RBP13.81□□□□□ -0.2
HTT-209ENST00000512068 PEG3Q9GZU2 1588 aa13.8□□□□□ -0.2
HTT-209ENST00000512068 ATAD2BQ9ULI0 1458 aa13.75□□□□□ -0.21
HTT-209ENST00000512068 BAZ1BQ9UIG0 1483 aaKnown RBP13.74□□□□□ -0.21
HTT-209ENST00000512068 HMGXB3Q12766 1538 aa13.67□□□□□ -0.22
HTT-209ENST00000512068 SPINK5Q9NQ38 1064 aaPredicted RBP13.66□□□□□ -0.22
HTT-209ENST00000512068 ZNF219Q9P2Y4 722 aaPredicted RBP13.64□□□□□ -0.23
HTT-209ENST00000512068 CC2D2AQ9P2K1 1620 aa13.64□□□□□ -0.23
HTT-209ENST00000512068 NCAPD3P42695 1498 aa13.63□□□□□ -0.23
HTT-209ENST00000512068 CCDC88BA6NC98 1476 aa13.62□□□□□ -0.23
HTT-209ENST00000512068 CAPN15O75808 1086 aa13.58□□□□□ -0.24
HTT-209ENST00000512068 TRHP20396 242 aaPredicted RBP13.56□□□□□ -0.24
HTT-209ENST00000512068 POLA2Q14181 598 aa13.43□□□□□ -0.26
HTT-209ENST00000512068 TRIM41Q8WV44 630 aa13.43□□□□□ -0.26
HTT-209ENST00000512068 CACNB1Q02641 598 aaPredicted RBP13.39□□□□□ -0.27
HTT-209ENST00000512068 PRDM2Q13029 1718 aa13.38□□□□□ -0.27
HTT-209ENST00000512068 ABCC8Q09428 1581 aa13.34□□□□□ -0.27
HTT-209ENST00000512068 DSG3P32926 999 aa13.34□□□□□ -0.27
HTT-209ENST00000512068 ABCB7O75027 752 aa13.33□□□□□ -0.28
HTT-209ENST00000512068 CFTRP13569 1480 aa13.33□□□□□ -0.28
HTT-209ENST00000512068 CADPSQ9ULU8 1353 aa13.31□□□□□ -0.28
HTT-209ENST00000512068 WRNQ14191 1432 aaPredicted RBP eCLIP13.3□□□□□ -0.28
HTT-209ENST00000512068 MKRN4PQ13434 485 aaPredicted RBP13.28□□□□□ -0.28
HTT-209ENST00000512068 FKBP8Q14318 412 aa13.27□□□□□ -0.29
HTT-209ENST00000512068 FBLN2P98095 1184 aa13.26□□□□□ -0.29
HTT-209ENST00000512068 LAMC3Q9Y6N6 1575 aa13.25□□□□□ -0.29
HTT-209ENST00000512068 ZBTB12Q9Y330 459 aaPredicted RBP13.25□□□□□ -0.29
HTT-209ENST00000512068 SYNJ1O43426 1573 aa13.2□□□□□ -0.3
HTT-209ENST00000512068 TOP2BQ02880 1626 aa13.19□□□□□ -0.3
HTT-209ENST00000512068 FANCD2Q9BXW9 1451 aa13.18□□□□□ -0.3
HTT-209ENST00000512068 BIVM-ERCC5R4GMW8 1640 aa13.18□□□□□ -0.3
HTT-209ENST00000512068 NESP48681 1621 aa13.17□□□□□ -0.3
HTT-209ENST00000512068 PDS5BQ9NTI5 1447 aa13.16□□□□□ -0.3
HTT-209ENST00000512068 FAM9AQ8IZU1 332 aaPredicted RBP13.16□□□□□ -0.3
HTT-209ENST00000512068 CEP164Q9UPV0 1460 aa13.14□□□□□ -0.31
HTT-209ENST00000512068 CUX1P39880 1505 aa13.13□□□□□ -0.31
HTT-209ENST00000512068 EEA1Q15075 1411 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 128 ms