RNA–Protein interactions for RNA: ENST00000511044.1

PCDH1-206, Transcript of protocadherin 1, humanhuman

TSL 1 (best)

Gene PCDH1, Length 2,674 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-206ENST00000511044 GOLGA3Q08378 1498 aa17.21■□□□□ 0.35
PCDH1-206ENST00000511044 TARBP1Q13395 1621 aaKnown RBP17.21■□□□□ 0.35
PCDH1-206ENST00000511044 WDR97A6NE52 1622 aa17.2■□□□□ 0.34
PCDH1-206ENST00000511044 IGF1RP08069 1367 aa17.2■□□□□ 0.34
PCDH1-206ENST00000511044 KIF21BO75037 1637 aa17.16■□□□□ 0.34
PCDH1-206ENST00000511044 GAPVD1Q14C86 1478 aa17.16■□□□□ 0.34
PCDH1-206ENST00000511044 ARXQ96QS3 562 aa17.15■□□□□ 0.34
PCDH1-206ENST00000511044 CARMIL1Q5VZK9 1371 aa17.14■□□□□ 0.33
PCDH1-206ENST00000511044 CEP162Q5TB80 1403 aa17.14■□□□□ 0.33
PCDH1-206ENST00000511044 PRXQ9BXM0 1461 aa17.14■□□□□ 0.33
PCDH1-206ENST00000511044 ABCA5Q8WWZ7 1642 aa17.13■□□□□ 0.33
PCDH1-206ENST00000511044 PLPPR3Q6T4P5 718 aa17.13■□□□□ 0.33
PCDH1-206ENST00000511044 IFT140Q96RY7 1462 aa17.09■□□□□ 0.33
PCDH1-206ENST00000511044 TNIKQ9UKE5 1360 aa17.09■□□□□ 0.33
PCDH1-206ENST00000511044 EIF4G3O43432 1585 aaKnown RBP17.09■□□□□ 0.33
PCDH1-206ENST00000511044 UBE2Q2Q8WVN8 375 aa17.08■□□□□ 0.33
PCDH1-206ENST00000511044 PBRM1Q86U86 1689 aa17.08■□□□□ 0.32
PCDH1-206ENST00000511044 FBLN2P98095 1184 aa17.08■□□□□ 0.32
PCDH1-206ENST00000511044 RTN4Q9NQC3 1192 aaKnown RBP17.08■□□□□ 0.32
PCDH1-206ENST00000511044 PODXL2Q9NZ53 605 aa17.06■□□□□ 0.32
PCDH1-206ENST00000511044 ERICH3Q5RHP9 1530 aa17.03■□□□□ 0.32
PCDH1-206ENST00000511044 P3H3Q8IVL6 736 aa17.03■□□□□ 0.32
PCDH1-206ENST00000511044 CLIP1P30622 1438 aa17.01■□□□□ 0.31
PCDH1-206ENST00000511044 YTHDC1Q96MU7 727 aaKnown RBP17.01■□□□□ 0.31
PCDH1-206ENST00000511044 SNAPC4Q5SXM2 1469 aa17.01■□□□□ 0.31
PCDH1-206ENST00000511044 KLHL34Q8N239 644 aa17■□□□□ 0.31
PCDH1-206ENST00000511044 CUL7Q14999 1698 aa16.98■□□□□ 0.31
PCDH1-206ENST00000511044 GRIN2BQ13224 1484 aa16.98■□□□□ 0.31
PCDH1-206ENST00000511044 ADAMTS12P58397 1594 aa16.94■□□□□ 0.3
PCDH1-206ENST00000511044 CHMP7Q8WUX9 453 aaPredicted RBP16.92■□□□□ 0.3
PCDH1-206ENST00000511044 TIMELESSQ9UNS1 1208 aa16.91■□□□□ 0.3
PCDH1-206ENST00000511044 ZNF316A6NFI3 1004 aaPredicted RBP16.91■□□□□ 0.3
PCDH1-206ENST00000511044 FHAD1B1AJZ9 1412 aa16.89■□□□□ 0.29
PCDH1-206ENST00000511044 CTTNBP2Q8WZ74 1663 aa16.88■□□□□ 0.29
PCDH1-206ENST00000511044 ARAP1Q96P48 1450 aa16.87■□□□□ 0.29
PCDH1-206ENST00000511044 ATP1B4Q9UN42 357 aaPredicted RBP16.86■□□□□ 0.29
PCDH1-206ENST00000511044 ARHGAP35Q9NRY4 1499 aa16.86■□□□□ 0.29
PCDH1-206ENST00000511044 FHOD3Q2V2M9 1422 aa16.84■□□□□ 0.29
PCDH1-206ENST00000511044 ANP32EQ9BTT0 268 aa16.83■□□□□ 0.29
PCDH1-206ENST00000511044 HNRNPUL2Q1KMD3 747 aaKnown RBP16.83■□□□□ 0.28
PCDH1-206ENST00000511044 GRIN2AQ12879 1464 aa16.82■□□□□ 0.28
PCDH1-206ENST00000511044 MAGI1Q96QZ7 1491 aaPredicted RBP16.8■□□□□ 0.28
PCDH1-206ENST00000511044 ARID3CA6NKF2 412 aa16.79■□□□□ 0.28
PCDH1-206ENST00000511044 SYNJ2O15056 1496 aa16.79■□□□□ 0.28
PCDH1-206ENST00000511044 CHD1O14646 1710 aa16.78■□□□□ 0.28
PCDH1-206ENST00000511044 VPS8Q8N3P4 1428 aa16.78■□□□□ 0.28
PCDH1-206ENST00000511044 CEP170Q5SW79 1584 aa16.77■□□□□ 0.27
PCDH1-206ENST00000511044 MIER1Q8N108 512 aa16.76■□□□□ 0.27
PCDH1-206ENST00000511044 IQGAP2Q13576 1575 aa16.75■□□□□ 0.27
PCDH1-206ENST00000511044 ANO8Q9HCE9 1232 aaPredicted RBP16.74■□□□□ 0.27
PCDH1-206ENST00000511044 PKNOX2Q96KN3 472 aa16.72■□□□□ 0.27
PCDH1-206ENST00000511044 KANK4Q5T7N3 995 aaPredicted RBP16.67■□□□□ 0.26
PCDH1-206ENST00000511044 PCF11O94913 1555 aaKnown RBP16.66■□□□□ 0.26
PCDH1-206ENST00000511044 KIAA0586Q9BVV6 1533 aa16.65■□□□□ 0.26
PCDH1-206ENST00000511044 TSHZ2Q9NRE2 1034 aa16.64■□□□□ 0.25
PCDH1-206ENST00000511044 SUPT16HQ9Y5B9 1047 aaKnown RBP16.64■□□□□ 0.25
PCDH1-206ENST00000511044 JPH4Q96JJ6 628 aa16.63■□□□□ 0.25
PCDH1-206ENST00000511044 SAMD9Q5K651 1589 aa16.63■□□□□ 0.25
PCDH1-206ENST00000511044 NUP160Q12769 1436 aa16.62■□□□□ 0.25
PCDH1-206ENST00000511044 EFCAB5A4FU69 1503 aa16.62■□□□□ 0.25
PCDH1-206ENST00000511044 DISP1Q96F81 1524 aa16.6■□□□□ 0.25
PCDH1-206ENST00000511044 KIAA0556O60303 1618 aa16.58■□□□□ 0.24
PCDH1-206ENST00000511044 PDIA4P13667 645 aaKnown RBP16.57■□□□□ 0.24
PCDH1-206ENST00000511044 CLSPNQ9HAW4 1339 aa16.56■□□□□ 0.24
PCDH1-206ENST00000511044 ERCC6L2Q5T890 1561 aa16.56■□□□□ 0.24
PCDH1-206ENST00000511044 UGGT2Q9NYU1 1516 aa16.56■□□□□ 0.24
PCDH1-206ENST00000511044 TULP1O00294 542 aaPredicted RBP16.55■□□□□ 0.24
PCDH1-206ENST00000511044 LRRIQ1Q96JM4 1722 aa16.55■□□□□ 0.24
PCDH1-206ENST00000511044 PRG4Q92954 1404 aaPredicted RBP16.54■□□□□ 0.24
PCDH1-206ENST00000511044 HOMEZQ8IX15 550 aa16.53■□□□□ 0.24
PCDH1-206ENST00000511044 FMN1Q68DA7 1419 aa16.53■□□□□ 0.24
PCDH1-206ENST00000511044 PLB1Q6P1J6 1458 aa16.51■□□□□ 0.23
PCDH1-206ENST00000511044 CDK13Q14004 1512 aaKnown RBP16.51■□□□□ 0.23
PCDH1-206ENST00000511044 TIAM1Q13009 1591 aa16.5■□□□□ 0.23
PCDH1-206ENST00000511044 CASKIN1Q8WXD9 1431 aa16.49■□□□□ 0.23
PCDH1-206ENST00000511044 FYCO1Q9BQS8 1478 aa16.48■□□□□ 0.23
PCDH1-206ENST00000511044 CARMIL2Q6F5E8 1435 aa16.47■□□□□ 0.23
PCDH1-206ENST00000511044 ITGAEP38570 1179 aa16.46■□□□□ 0.23
PCDH1-206ENST00000511044 AEBP2Q6ZN18 517 aaPredicted RBP16.44■□□□□ 0.22
PCDH1-206ENST00000511044 NEFLP07196 543 aa16.44■□□□□ 0.22
PCDH1-206ENST00000511044 PDE4CQ08493 712 aa16.44■□□□□ 0.22
PCDH1-206ENST00000511044 DHX57Q6P158 1386 aaKnown RBP16.43■□□□□ 0.22
PCDH1-206ENST00000511044 CFAP43Q8NDM7 1665 aa16.43■□□□□ 0.22
PCDH1-206ENST00000511044 LRRC9Q6ZRR7 1453 aa16.43■□□□□ 0.22
PCDH1-206ENST00000511044 MTUS2Q5JR59 1369 aa16.42■□□□□ 0.22
PCDH1-206ENST00000511044 CLASP1Q7Z460 1538 aa16.42■□□□□ 0.22
PCDH1-206ENST00000511044 OSCARQ8IYS5 282 aa16.42■□□□□ 0.22
PCDH1-206ENST00000511044 RAPGEF6Q8TEU7 1601 aa16.4■□□□□ 0.22
PCDH1-206ENST00000511044 HECW1Q76N89 1606 aa16.4■□□□□ 0.22
PCDH1-206ENST00000511044 MAGI3Q5TCQ9 1506 aa16.4■□□□□ 0.22
PCDH1-206ENST00000511044 NUP153P49790 1475 aaKnown RBP16.4■□□□□ 0.22
PCDH1-206ENST00000511044 EPRSP07814 1512 aaKnown RBP16.39■□□□□ 0.21
PCDH1-206ENST00000511044 PTPRGP23470 1445 aa16.39■□□□□ 0.21
PCDH1-206ENST00000511044 SHROOM2Q13796 1616 aa16.38■□□□□ 0.21
PCDH1-206ENST00000511044 AMER1Q5JTC6 1135 aaPredicted RBP16.38■□□□□ 0.21
PCDH1-206ENST00000511044 PHLDB1Q86UU1 1377 aa16.38■□□□□ 0.21
PCDH1-206ENST00000511044 FAM50AQ14320 339 aaKnown RBP16.35■□□□□ 0.21
PCDH1-206ENST00000511044 CCDC18Q5T9S5 1454 aa16.29■□□□□ 0.2
PCDH1-206ENST00000511044 ABCA8O94911 1581 aa16.29■□□□□ 0.2
PCDH1-206ENST00000511044 MAP3K1Q13233 1512 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms