RNA–Protein interactions for RNA: ENST00000511044.1

PCDH1-206, Transcript of protocadherin 1, humanhuman

TSL 1 (best)

Gene PCDH1, Length 2,674 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-206ENST00000511044 NISCHQ9Y2I1 1504 aa24.33■■□□□ 1.49
PCDH1-206ENST00000511044 CCDC180Q9P1Z9 1646 aa21.12■□□□□ 0.97
PCDH1-206ENST00000511044 DCAF8L2P0C7V8 631 aa20.63■□□□□ 0.89
PCDH1-206ENST00000511044 ABCC9O60706 1549 aa20.49■□□□□ 0.87
PCDH1-206ENST00000511044 ZCCHC6Q5VYS8 1495 aaKnown RBP20.4■□□□□ 0.86
PCDH1-206ENST00000511044 SHROOM4Q9ULL8 1493 aa20.27■□□□□ 0.84
PCDH1-206ENST00000511044 PELP1Q8IZL8 1130 aaKnown RBP20.16■□□□□ 0.82
PCDH1-206ENST00000511044 MYT1Q01538 1121 aa20.11■□□□□ 0.81
PCDH1-206ENST00000511044 DCAF1Q9Y4B6 1507 aa19.87■□□□□ 0.77
PCDH1-206ENST00000511044 SLC24A1O60721 1099 aa19.82■□□□□ 0.76
PCDH1-206ENST00000511044 SCRIBQ14160 1630 aa19.78■□□□□ 0.76
PCDH1-206ENST00000511044 NACADO15069 1562 aa19.71■□□□□ 0.75
PCDH1-206ENST00000511044 MYO15BQ96JP2 1530 aa19.66■□□□□ 0.74
PCDH1-206ENST00000511044 RB1CC1Q8TDY2 1594 aa19.65■□□□□ 0.74
PCDH1-206ENST00000511044 TTBK1Q5TCY1 1321 aaPredicted RBP19.63■□□□□ 0.73
PCDH1-206ENST00000511044 UNC13AQ9UPW8 1703 aa19.43■□□□□ 0.7
PCDH1-206ENST00000511044 PABPN1Q86U42 306 aaKnown RBP eCLIP19.4■□□□□ 0.7
PCDH1-206ENST00000511044 SUPT5HO00267 1087 aaKnown RBP19.4■□□□□ 0.7
PCDH1-206ENST00000511044 PRKCSHP14314 528 aaPredicted RBP19.28■□□□□ 0.68
PCDH1-206ENST00000511044 BICRAQ9NZM4 1560 aa19.15■□□□□ 0.66
PCDH1-206ENST00000511044 CECR2Q9BXF3 1484 aa19.11■□□□□ 0.65
PCDH1-206ENST00000511044 HRCP23327 699 aa19.08■□□□□ 0.64
PCDH1-206ENST00000511044 APLP2Q06481 763 aa18.99■□□□□ 0.63
PCDH1-206ENST00000511044 MROH2BQ7Z745 1585 aa18.93■□□□□ 0.62
PCDH1-206ENST00000511044 ERICH6Q7L0X2 663 aa18.92■□□□□ 0.62
PCDH1-206ENST00000511044 RSF1Q96T23 1441 aaPredicted RBP18.9■□□□□ 0.62
PCDH1-206ENST00000511044 WIZO95785 1651 aa18.82■□□□□ 0.6
PCDH1-206ENST00000511044 CHIC1Q5VXU3 224 aa18.78■□□□□ 0.6
PCDH1-206ENST00000511044 BAZ1AQ9NRL2 1556 aaPredicted RBP18.77■□□□□ 0.59
PCDH1-206ENST00000511044 SMARCA4P51532 1647 aa18.77■□□□□ 0.59
PCDH1-206ENST00000511044 PPARGC1BQ86YN6 1023 aaKnown RBP18.69■□□□□ 0.58
PCDH1-206ENST00000511044 DAXXQ9UER7 740 aaPredicted RBP18.68■□□□□ 0.58
PCDH1-206ENST00000511044 EIF4G1Q04637 1599 aaKnown RBP18.6■□□□□ 0.57
PCDH1-206ENST00000511044 PCGF6Q9BYE7 350 aa18.57■□□□□ 0.56
PCDH1-206ENST00000511044 ATAD2BQ9ULI0 1458 aa18.48■□□□□ 0.55
PCDH1-206ENST00000511044 TOP2AP11388 1531 aaKnown RBP18.43■□□□□ 0.54
PCDH1-206ENST00000511044 BAZ1BQ9UIG0 1483 aaKnown RBP18.42■□□□□ 0.54
PCDH1-206ENST00000511044 CC2D2AQ9P2K1 1620 aa18.4■□□□□ 0.54
PCDH1-206ENST00000511044 SMARCA2P51531 1590 aa18.37■□□□□ 0.53
PCDH1-206ENST00000511044 PEG3Q9GZU2 1588 aa18.36■□□□□ 0.53
PCDH1-206ENST00000511044 CCDC88BA6NC98 1476 aa18.34■□□□□ 0.53
PCDH1-206ENST00000511044 LOC105371045A0A1W2PR82 267 aa18.31■□□□□ 0.52
PCDH1-206ENST00000511044 DNAJC5BQ9UF47 199 aa18.28■□□□□ 0.52
PCDH1-206ENST00000511044 NCAPD3P42695 1498 aa18.22■□□□□ 0.51
PCDH1-206ENST00000511044 SCAF1Q9H7N4 1312 aaKnown RBP18.22■□□□□ 0.51
PCDH1-206ENST00000511044 BCL11AQ9H165 835 aa18.21■□□□□ 0.51
PCDH1-206ENST00000511044 HMGXB3Q12766 1538 aa18.18■□□□□ 0.5
PCDH1-206ENST00000511044 ABCC8Q09428 1581 aa18.1■□□□□ 0.49
PCDH1-206ENST00000511044 TRIM26Q12899 539 aaPredicted RBP18.08■□□□□ 0.49
PCDH1-206ENST00000511044 TRIM41Q8WV44 630 aa18.06■□□□□ 0.48
PCDH1-206ENST00000511044 FAM9AQ8IZU1 332 aaPredicted RBP18■□□□□ 0.47
PCDH1-206ENST00000511044 EHMT2Q96KQ7 1210 aa17.98■□□□□ 0.47
PCDH1-206ENST00000511044 NESP48681 1621 aa17.96■□□□□ 0.47
PCDH1-206ENST00000511044 EIF5BO60841 1220 aaKnown RBP17.86■□□□□ 0.45
PCDH1-206ENST00000511044 CFTRP13569 1480 aa17.85■□□□□ 0.45
PCDH1-206ENST00000511044 CADPSQ9ULU8 1353 aa17.84■□□□□ 0.45
PCDH1-206ENST00000511044 ZEB1P37275 1124 aaPredicted RBP17.82■□□□□ 0.44
PCDH1-206ENST00000511044 WRNQ14191 1432 aaPredicted RBP eCLIP17.81■□□□□ 0.44
PCDH1-206ENST00000511044 SYNJ1O43426 1573 aa17.81■□□□□ 0.44
PCDH1-206ENST00000511044 PRDM2Q13029 1718 aa17.72■□□□□ 0.43
PCDH1-206ENST00000511044 FANCD2Q9BXW9 1451 aa17.72■□□□□ 0.43
PCDH1-206ENST00000511044 SOGA1O94964 1423 aa17.69■□□□□ 0.42
PCDH1-206ENST00000511044 CUX1P39880 1505 aa17.68■□□□□ 0.42
PCDH1-206ENST00000511044 ACIN1Q9UKV3 1341 aaKnown RBP17.68■□□□□ 0.42
PCDH1-206ENST00000511044 RUSC2Q8N2Y8 1516 aa17.67■□□□□ 0.42
PCDH1-206ENST00000511044 KIF21AQ7Z4S6 1674 aa17.66■□□□□ 0.42
PCDH1-206ENST00000511044 LAMC3Q9Y6N6 1575 aa17.64■□□□□ 0.42
PCDH1-206ENST00000511044 NEUROD1Q13562 356 aa17.62■□□□□ 0.41
PCDH1-206ENST00000511044 TOP2BQ02880 1626 aa17.6■□□□□ 0.41
PCDH1-206ENST00000511044 CEP164Q9UPV0 1460 aa17.6■□□□□ 0.41
PCDH1-206ENST00000511044 GTF3C3Q9Y5Q9 886 aa17.56■□□□□ 0.4
PCDH1-206ENST00000511044 BIVM-ERCC5R4GMW8 1640 aa17.55■□□□□ 0.4
PCDH1-206ENST00000511044 PDS5BQ9NTI5 1447 aa17.55■□□□□ 0.4
PCDH1-206ENST00000511044 NCBP3Q53F19 620 aaKnown RBP17.55■□□□□ 0.4
PCDH1-206ENST00000511044 URB2Q14146 1524 aaKnown RBP17.52■□□□□ 0.4
PCDH1-206ENST00000511044 ERCC6Q03468 1493 aa17.52■□□□□ 0.39
PCDH1-206ENST00000511044 FGD5Q6ZNL6 1462 aa17.52■□□□□ 0.39
PCDH1-206ENST00000511044 TOPBP1Q92547 1522 aa17.49■□□□□ 0.39
PCDH1-206ENST00000511044 RAD54L2Q9Y4B4 1467 aa17.49■□□□□ 0.39
PCDH1-206ENST00000511044 DNMBPQ6XZF7 1577 aa17.45■□□□□ 0.38
PCDH1-206ENST00000511044 POLA1P09884 1462 aaPredicted RBP17.43■□□□□ 0.38
PCDH1-206ENST00000511044 RANGAP1P46060 587 aaPredicted RBP17.43■□□□□ 0.38
PCDH1-206ENST00000511044 CSRNP3Q8WYN3 585 aa17.43■□□□□ 0.38
PCDH1-206ENST00000511044 CENPBP07199 599 aaPredicted RBP17.42■□□□□ 0.38
PCDH1-206ENST00000511044 CUX2O14529 1486 aa17.42■□□□□ 0.38
PCDH1-206ENST00000511044 PLEKHG5O94827 1062 aa17.41■□□□□ 0.38
PCDH1-206ENST00000511044 UBTFP17480 764 aaKnown RBP17.37■□□□□ 0.37
PCDH1-206ENST00000511044 MRC2Q9UBG0 1479 aa17.36■□□□□ 0.37
PCDH1-206ENST00000511044 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.35■□□□□ 0.37
PCDH1-206ENST00000511044 TDRD9Q8NDG6 1382 aaKnown RBP17.35■□□□□ 0.37
PCDH1-206ENST00000511044 CCER1Q8TC90 406 aaPredicted RBP17.34■□□□□ 0.37
PCDH1-206ENST00000511044 KIF27Q86VH2 1401 aa17.32■□□□□ 0.36
PCDH1-206ENST00000511044 RAPGEF2Q9Y4G8 1499 aa17.3■□□□□ 0.36
PCDH1-206ENST00000511044 THOC2Q8NI27 1593 aaKnown RBP17.28■□□□□ 0.36
PCDH1-206ENST00000511044 EEA1Q15075 1411 aa17.28■□□□□ 0.36
PCDH1-206ENST00000511044 WDR62O43379 1518 aa17.24■□□□□ 0.35
PCDH1-206ENST00000511044 DIEXFQ68CQ4 756 aaKnown RBP17.24■□□□□ 0.35
PCDH1-206ENST00000511044 ZNF608Q9ULD9 1512 aaPredicted RBP17.24■□□□□ 0.35
PCDH1-206ENST00000511044 AQRO60306 1485 aaKnown RBP eCLIP17.23■□□□□ 0.35
PCDH1-206ENST00000511044 ABCA10Q8WWZ4 1543 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 1125.3 ms