RNA–Protein interactions for RNA: ENST00000494748.1

SDF4-207, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 3,516 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-207ENST00000494748 ITGAEP38570 1179 aa21.98■■□□□ 1.11
SDF4-207ENST00000494748 CFTRP13569 1480 aa21.96■■□□□ 1.11
SDF4-207ENST00000494748 PHLDB1Q86UU1 1377 aa21.96■■□□□ 1.11
SDF4-207ENST00000494748 NCAPD3P42695 1498 aa21.95■■□□□ 1.11
SDF4-207ENST00000494748 BCANQ96GW7 911 aa21.94■■□□□ 1.1
SDF4-207ENST00000494748 FKBP8Q14318 412 aa21.93■■□□□ 1.1
SDF4-207ENST00000494748 DDX10Q13206 875 aaKnown RBP21.92■■□□□ 1.1
SDF4-207ENST00000494748 SIN3AQ96ST3 1273 aa21.91■■□□□ 1.1
SDF4-207ENST00000494748 IGF1RP08069 1367 aa21.89■■□□□ 1.09
SDF4-207ENST00000494748 PCF11O94913 1555 aaKnown RBP21.89■■□□□ 1.09
SDF4-207ENST00000494748 CCER2I3L3R5 266 aa21.83■■□□□ 1.08
SDF4-207ENST00000494748 TIMELESSQ9UNS1 1208 aa21.82■■□□□ 1.08
SDF4-207ENST00000494748 RBM19Q9Y4C8 960 aaKnown RBP21.81■■□□□ 1.08
SDF4-207ENST00000494748 BCL11AQ9H165 835 aa21.77■■□□□ 1.08
SDF4-207ENST00000494748 CARMIL1Q5VZK9 1371 aa21.74■■□□□ 1.07
SDF4-207ENST00000494748 HIRIP3Q9BW71 556 aaPredicted RBP21.74■■□□□ 1.07
SDF4-207ENST00000494748 FHAD1B1AJZ9 1412 aa21.74■■□□□ 1.07
SDF4-207ENST00000494748 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.73■■□□□ 1.079e-8■■■■□ 26.1
SDF4-207ENST00000494748 TRIM52Q96A61 297 aa21.73■■□□□ 1.07
SDF4-207ENST00000494748 KDM5BQ9UGL1 1544 aa21.72■■□□□ 1.07
SDF4-207ENST00000494748 FGD5Q6ZNL6 1462 aa21.7■■□□□ 1.07
SDF4-207ENST00000494748 FAM50AQ14320 339 aaKnown RBP21.7■■□□□ 1.06
SDF4-207ENST00000494748 FYCO1Q9BQS8 1478 aa21.69■■□□□ 1.06
SDF4-207ENST00000494748 MSH5O43196 834 aa21.67■■□□□ 1.06
SDF4-207ENST00000494748 ANP32CO43423 234 aa21.66■■□□□ 1.06
SDF4-207ENST00000494748 NEFLP07196 543 aa21.66■■□□□ 1.06
SDF4-207ENST00000494748 LRRIQ1Q96JM4 1722 aa21.65■■□□□ 1.06
SDF4-207ENST00000494748 AQRO60306 1485 aaKnown RBP eCLIP21.65■■□□□ 1.063e-9■■□□□ 13.4
SDF4-207ENST00000494748 PTPN23Q9H3S7 1636 aa21.63■■□□□ 1.05
SDF4-207ENST00000494748 CASKIN1Q8WXD9 1431 aa21.62■■□□□ 1.05
SDF4-207ENST00000494748 EFCAB5A4FU69 1503 aa21.62■■□□□ 1.05
SDF4-207ENST00000494748 CTTNBP2Q8WZ74 1663 aa21.62■■□□□ 1.05
SDF4-207ENST00000494748 FHOD3Q2V2M9 1422 aa21.62■■□□□ 1.05
SDF4-207ENST00000494748 CCDC18Q5T9S5 1454 aa21.61■■□□□ 1.05
SDF4-207ENST00000494748 PTPRKQ15262 1439 aa21.61■■□□□ 1.05
SDF4-207ENST00000494748 FGD6Q6ZV73 1430 aa21.6■■□□□ 1.05
SDF4-207ENST00000494748 HFM1A2PYH4 1435 aa21.58■■□□□ 1.04
SDF4-207ENST00000494748 UACAQ9BZF9 1416 aa21.57■■□□□ 1.04
SDF4-207ENST00000494748 SNAPC4Q5SXM2 1469 aa21.56■■□□□ 1.04
SDF4-207ENST00000494748 P3H3Q8IVL6 736 aa21.54■■□□□ 1.04
SDF4-207ENST00000494748 TONSLQ96HA7 1378 aa21.54■■□□□ 1.04
SDF4-207ENST00000494748 CADPSQ9ULU8 1353 aa21.52■■□□□ 1.04
SDF4-207ENST00000494748 FANCIQ9NVI1 1328 aa21.52■■□□□ 1.04
SDF4-207ENST00000494748 CC2D2AQ9P2K1 1620 aa21.51■■□□□ 1.03
SDF4-207ENST00000494748 NAIPQ13075 1403 aa21.5■■□□□ 1.03
SDF4-207ENST00000494748 CUL7Q14999 1698 aa21.49■■□□□ 1.03
SDF4-207ENST00000494748 DENND4BO75064 1496 aaPredicted RBP21.47■■□□□ 1.03
SDF4-207ENST00000494748 ABCA10Q8WWZ4 1543 aa21.47■■□□□ 1.03
SDF4-207ENST00000494748 NCOA2Q15596 1464 aa21.46■■□□□ 1.03
SDF4-207ENST00000494748 SAMD9Q5K651 1589 aa21.45■■□□□ 1.02
SDF4-207ENST00000494748 GCC2Q8IWJ2 1684 aa21.44■■□□□ 1.02
SDF4-207ENST00000494748 HECW1Q76N89 1606 aa21.43■■□□□ 1.02
SDF4-207ENST00000494748 WASHC2AQ641Q2 1341 aa21.42■■□□□ 1.02
SDF4-207ENST00000494748 DNMBPQ6XZF7 1577 aa21.42■■□□□ 1.02
SDF4-207ENST00000494748 RAD54L2Q9Y4B4 1467 aa21.42■■□□□ 1.02
SDF4-207ENST00000494748 HNRNPUQ00839 825 aaKnown RBP eCLIP21.42■■□□□ 1.02
SDF4-207ENST00000494748 ATP1B4Q9UN42 357 aaPredicted RBP21.41■■□□□ 1.02
SDF4-207ENST00000494748 FMN1Q68DA7 1419 aa21.4■■□□□ 1.02
SDF4-207ENST00000494748 IRX6P78412 446 aaPredicted RBP21.4■■□□□ 1.02
SDF4-207ENST00000494748 SUPT6HQ7KZ85 1726 aaKnown RBP21.4■■□□□ 1.02
SDF4-207ENST00000494748 ARHGEF11O15085 1522 aa21.39■■□□□ 1.02
SDF4-207ENST00000494748 GRIN2BQ13224 1484 aa21.39■■□□□ 1.01
SDF4-207ENST00000494748 MYOM3Q5VTT5 1437 aa21.39■■□□□ 1.01
SDF4-207ENST00000494748 POLA1P09884 1462 aaPredicted RBP21.37■■□□□ 1.01
SDF4-207ENST00000494748 KDM6BO15054 1643 aa21.37■■□□□ 1.01
SDF4-207ENST00000494748 THOC2Q8NI27 1593 aaKnown RBP21.36■■□□□ 1.01
SDF4-207ENST00000494748 FANCD2Q9BXW9 1451 aa21.36■■□□□ 1.01
SDF4-207ENST00000494748 UGGT2Q9NYU1 1516 aa21.35■■□□□ 1.01
SDF4-207ENST00000494748 CCDC184Q52MB2 194 aa21.34■■□□□ 1.01
SDF4-207ENST00000494748 POLR1AO95602 1720 aaPredicted RBP21.34■■□□□ 1.01
SDF4-207ENST00000494748 MAGI3Q5TCQ9 1506 aa21.34■■□□□ 1.01
SDF4-207ENST00000494748 TOPBP1Q92547 1522 aa21.33■■□□□ 1.01
SDF4-207ENST00000494748 CNTLNQ9NXG0 1405 aa21.33■■□□□ 1.01
SDF4-207ENST00000494748 ERICH6BQ5W0A0 696 aa21.33■■□□□ 1.01
SDF4-207ENST00000494748 HSPA5P11021 654 aaKnown RBP21.33■■□□□ 1.01
SDF4-207ENST00000494748 CDK11AQ9UQ88 783 aaPredicted RBP21.33■■□□□ 1.01
SDF4-207ENST00000494748 EHBP1L1Q8N3D4 1523 aa21.33■■□□□ 1
SDF4-207ENST00000494748 MTUS2Q5JR59 1369 aa21.32■■□□□ 1
SDF4-207ENST00000494748 TCOF1Q13428 1488 aaKnown RBP21.3■■□□□ 1
SDF4-207ENST00000494748 KIF21AQ7Z4S6 1674 aa21.29■■□□□ 1
SDF4-207ENST00000494748 NCOA1Q15788 1441 aa21.27■■□□□ 1
SDF4-207ENST00000494748 PPP4R2Q9NY27 417 aa21.27■■□□□ 1
SDF4-207ENST00000494748 ABCA5Q8WWZ7 1642 aa21.27■■□□□ 1
SDF4-207ENST00000494748 C11orf95C9JLR9 678 aaPredicted RBP21.25■□□□□ 0.99
SDF4-207ENST00000494748 AKNAQ7Z591 1439 aa21.24■□□□□ 0.99
SDF4-207ENST00000494748 CCDC7Q96M83 1385 aa21.21■□□□□ 0.99
SDF4-207ENST00000494748 PRKRIP1Q9H875 184 aaPredicted RBP21.2■□□□□ 0.98
SDF4-207ENST00000494748 ZBED9Q6R2W3 1325 aa21.19■□□□□ 0.98
SDF4-207ENST00000494748 EIF4G2P78344 907 aaKnown RBP eCLIP21.18■□□□□ 0.981e-8■■■■■ 28.6
SDF4-207ENST00000494748 TEX14Q8IWB6 1497 aa21.16■□□□□ 0.98
SDF4-207ENST00000494748 SPATA31E1Q6ZUB1 1445 aa21.16■□□□□ 0.98
SDF4-207ENST00000494748 RRP7BPQ9NSQ0 103 aa21.15■□□□□ 0.98
SDF4-207ENST00000494748 B4GALNT3Q6L9W6 998 aa21.14■□□□□ 0.97
SDF4-207ENST00000494748 LAMC3Q9Y6N6 1575 aa21.14■□□□□ 0.97
SDF4-207ENST00000494748 L3MBTL2Q969R5 705 aa21.12■□□□□ 0.97
SDF4-207ENST00000494748 NESP48681 1621 aa21.12■□□□□ 0.97
SDF4-207ENST00000494748 URB2Q14146 1524 aaKnown RBP21.11■□□□□ 0.97
SDF4-207ENST00000494748 RPRD2Q5VT52 1461 aaKnown RBP21.11■□□□□ 0.97
SDF4-207ENST00000494748 ERICH6Q7L0X2 663 aa21.11■□□□□ 0.97
SDF4-207ENST00000494748 MPHOSPH9Q99550 1183 aa21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms