RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 GAPVD1Q14C86 1478 aa18.71■□□□□ 0.59
COL6A3-214ENST00000493608 RIMBP3CA6NJZ7 1639 aa18.71■□□□□ 0.58
COL6A3-214ENST00000493608 RIMBP3BA6NNM3 1639 aa18.71■□□□□ 0.58
COL6A3-214ENST00000493608 TOP2BQ02880 1626 aa18.71■□□□□ 0.58
COL6A3-214ENST00000493608 RIMBP3Q9UFD9 1639 aa18.71■□□□□ 0.58
COL6A3-214ENST00000493608 BIVM-ERCC5R4GMW8 1640 aa18.71■□□□□ 0.58
COL6A3-214ENST00000493608 ABCA10Q8WWZ4 1543 aa18.69■□□□□ 0.58
COL6A3-214ENST00000493608 PBRM1Q86U86 1689 aa18.69■□□□□ 0.58
COL6A3-214ENST00000493608 MAGI1Q96QZ7 1491 aaPredicted RBP18.66■□□□□ 0.58
COL6A3-214ENST00000493608 ARHGEF11O15085 1522 aa18.66■□□□□ 0.58
COL6A3-214ENST00000493608 ABCA5Q8WWZ7 1642 aa18.65■□□□□ 0.58
COL6A3-214ENST00000493608 SYNJ2O15056 1496 aa18.62■□□□□ 0.57
COL6A3-214ENST00000493608 CYB5RLQ6IPT4 315 aa18.59■□□□□ 0.57
COL6A3-214ENST00000493608 CLASP1Q7Z460 1538 aa18.54■□□□□ 0.56
COL6A3-214ENST00000493608 SPINK5Q9NQ38 1064 aaPredicted RBP18.5■□□□□ 0.55
COL6A3-214ENST00000493608 ARAP1Q96P48 1450 aa18.5■□□□□ 0.55
COL6A3-214ENST00000493608 ADAMTS12P58397 1594 aa18.49■□□□□ 0.55
COL6A3-214ENST00000493608 GRIN2AQ12879 1464 aa18.48■□□□□ 0.55
COL6A3-214ENST00000493608 ERICH3Q5RHP9 1530 aa18.46■□□□□ 0.55
COL6A3-214ENST00000493608 SLC4A1APQ9BWU0 796 aaKnown RBP18.46■□□□□ 0.55
COL6A3-214ENST00000493608 FHAD1B1AJZ9 1412 aa18.46■□□□□ 0.55
COL6A3-214ENST00000493608 CEP170Q5SW79 1584 aa18.42■□□□□ 0.54
COL6A3-214ENST00000493608 NUP160Q12769 1436 aa18.39■□□□□ 0.53
COL6A3-214ENST00000493608 CAPN15O75808 1086 aa18.38■□□□□ 0.53
COL6A3-214ENST00000493608 ERCC6L2Q5T890 1561 aa18.36■□□□□ 0.53
COL6A3-214ENST00000493608 KIF27Q86VH2 1401 aa18.36■□□□□ 0.53
COL6A3-214ENST00000493608 IGF1RP08069 1367 aa18.35■□□□□ 0.53
COL6A3-214ENST00000493608 TRHP20396 242 aaPredicted RBP18.32■□□□□ 0.52
COL6A3-214ENST00000493608 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.31■□□□□ 0.52
COL6A3-214ENST00000493608 DSG3P32926 999 aa18.31■□□□□ 0.52
COL6A3-214ENST00000493608 HNRNPUL2Q1KMD3 747 aaKnown RBP18.31■□□□□ 0.52
COL6A3-214ENST00000493608 JPH4Q96JJ6 628 aa18.28■□□□□ 0.52
COL6A3-214ENST00000493608 SHROOM2Q13796 1616 aa18.27■□□□□ 0.52
COL6A3-214ENST00000493608 CUL7Q14999 1698 aa18.25■□□□□ 0.51
COL6A3-214ENST00000493608 PRG4Q92954 1404 aaPredicted RBP18.24■□□□□ 0.51
COL6A3-214ENST00000493608 APLP2Q06481 763 aa18.24■□□□□ 0.51
COL6A3-214ENST00000493608 SAMD1Q6SPF0 538 aaPredicted RBP18.24■□□□□ 0.51
COL6A3-214ENST00000493608 CARMIL1Q5VZK9 1371 aa18.24■□□□□ 0.51
COL6A3-214ENST00000493608 MYCNP04198 464 aaPredicted RBP18.22■□□□□ 0.51
COL6A3-214ENST00000493608 RUSC2Q8N2Y8 1516 aa18.22■□□□□ 0.51
COL6A3-214ENST00000493608 KIAA0586Q9BVV6 1533 aa18.17■□□□□ 0.5
COL6A3-214ENST00000493608 FOXD4L1Q9NU39 408 aa18.16■□□□□ 0.5
COL6A3-214ENST00000493608 ZNF219Q9P2Y4 722 aaPredicted RBP18.14■□□□□ 0.49
COL6A3-214ENST00000493608 TTBK1Q5TCY1 1321 aaPredicted RBP18.09■□□□□ 0.49
COL6A3-214ENST00000493608 RAPGEF2Q9Y4G8 1499 aa18.07■□□□□ 0.48
COL6A3-214ENST00000493608 ZBTB22O15209 634 aa18.04■□□□□ 0.48
COL6A3-214ENST00000493608 IQGAP2Q13576 1575 aa18.04■□□□□ 0.48
COL6A3-214ENST00000493608 ABCB7O75027 752 aa18■□□□□ 0.47
COL6A3-214ENST00000493608 NPM1P06748 294 aaKnown RBP eCLIP18■□□□□ 0.47
COL6A3-214ENST00000493608 PTPRGP23470 1445 aa17.98■□□□□ 0.47
COL6A3-214ENST00000493608 CARMIL2Q6F5E8 1435 aa17.98■□□□□ 0.47
COL6A3-214ENST00000493608 ADCY10Q96PN6 1610 aa17.98■□□□□ 0.47
COL6A3-214ENST00000493608 TNIKQ9UKE5 1360 aa17.96■□□□□ 0.47
COL6A3-214ENST00000493608 DISP1Q96F81 1524 aa17.94■□□□□ 0.46
COL6A3-214ENST00000493608 PRXQ9BXM0 1461 aa17.94■□□□□ 0.46
COL6A3-214ENST00000493608 FAM9AQ8IZU1 332 aaPredicted RBP17.93■□□□□ 0.46
COL6A3-214ENST00000493608 CSRNP3Q8WYN3 585 aa17.93■□□□□ 0.46
COL6A3-214ENST00000493608 KIF13AQ9H1H9 1805 aa17.93■□□□□ 0.46
COL6A3-214ENST00000493608 CTTNBP2Q8WZ74 1663 aa17.92■□□□□ 0.46
COL6A3-214ENST00000493608 FAM69CQ0P6D2 419 aa17.91■□□□□ 0.46
COL6A3-214ENST00000493608 UGGT2Q9NYU1 1516 aa17.91■□□□□ 0.46
COL6A3-214ENST00000493608 KIAA0556O60303 1618 aa17.87■□□□□ 0.45
COL6A3-214ENST00000493608 MAPKBP1O60336 1514 aa17.85■□□□□ 0.45
COL6A3-214ENST00000493608 ABCC10Q5T3U5 1492 aa17.85■□□□□ 0.45
COL6A3-214ENST00000493608 ATF5Q9Y2D1 282 aaPredicted RBP17.85■□□□□ 0.45
COL6A3-214ENST00000493608 UACAQ9BZF9 1416 aa17.84■□□□□ 0.45
COL6A3-214ENST00000493608 P3H3Q8IVL6 736 aa17.82■□□□□ 0.44
COL6A3-214ENST00000493608 ABCC2Q92887 1545 aa17.82■□□□□ 0.44
COL6A3-214ENST00000493608 DIP2BQ9P265 1576 aa17.81■□□□□ 0.44
COL6A3-214ENST00000493608 RANGAP1P46060 587 aaPredicted RBP17.8■□□□□ 0.44
COL6A3-214ENST00000493608 UHRF1BP1LA0JNW5 1464 aa17.8■□□□□ 0.44
COL6A3-214ENST00000493608 EEA1Q15075 1411 aa17.8■□□□□ 0.44
COL6A3-214ENST00000493608 TSPOAP1O95153 1857 aa17.8■□□□□ 0.44
COL6A3-214ENST00000493608 GOLGA3Q08378 1498 aa17.78■□□□□ 0.44
COL6A3-214ENST00000493608 EHMT2Q96KQ7 1210 aa17.78■□□□□ 0.44
COL6A3-214ENST00000493608 ASXL2Q76L83 1435 aa17.77■□□□□ 0.44
COL6A3-214ENST00000493608 PLB1Q6P1J6 1458 aa17.75■□□□□ 0.43
COL6A3-214ENST00000493608 POLA2Q14181 598 aa17.74■□□□□ 0.43
COL6A3-214ENST00000493608 ZCCHC11Q5TAX3 1644 aaKnown RBP17.73■□□□□ 0.43
COL6A3-214ENST00000493608 KDM5BQ9UGL1 1544 aa17.72■□□□□ 0.43
COL6A3-214ENST00000493608 ARID3CA6NKF2 412 aa17.69■□□□□ 0.42
COL6A3-214ENST00000493608 ABCA8O94911 1581 aa17.69■□□□□ 0.42
COL6A3-214ENST00000493608 KIF21BO75037 1637 aa17.66■□□□□ 0.42
COL6A3-214ENST00000493608 KCNH8Q96L42 1107 aa17.65■□□□□ 0.42
COL6A3-214ENST00000493608 EPRSP07814 1512 aaKnown RBP17.65■□□□□ 0.42
COL6A3-214ENST00000493608 SAMD9Q5K651 1589 aa17.65■□□□□ 0.42
COL6A3-214ENST00000493608 UBTFP17480 764 aaKnown RBP17.64■□□□□ 0.41
COL6A3-214ENST00000493608 GLI2P10070 1586 aa17.64■□□□□ 0.41
COL6A3-214ENST00000493608 PPRC1Q5VV67 1664 aaKnown RBP17.61■□□□□ 0.41
COL6A3-214ENST00000493608 FHOD3Q2V2M9 1422 aa17.61■□□□□ 0.41
COL6A3-214ENST00000493608 WDR7Q9Y4E6 1490 aa17.61■□□□□ 0.41
COL6A3-214ENST00000493608 KDM6BO15054 1643 aa17.61■□□□□ 0.41
COL6A3-214ENST00000493608 ATXN8OSP0DMR3 200 aa17.6■□□□□ 0.41
COL6A3-214ENST00000493608 ATP10BO94823 1461 aa17.57■□□□□ 0.4
COL6A3-214ENST00000493608 MAP3K4Q9Y6R4 1608 aa17.57■□□□□ 0.4
COL6A3-214ENST00000493608 RAPGEF6Q8TEU7 1601 aa17.56■□□□□ 0.4
COL6A3-214ENST00000493608 CD109Q6YHK3 1445 aa17.51■□□□□ 0.39
COL6A3-214ENST00000493608 COL17A1Q9UMD9 1497 aaPredicted RBP17.5■□□□□ 0.39
COL6A3-214ENST00000493608 EFCAB5A4FU69 1503 aa17.5■□□□□ 0.39
COL6A3-214ENST00000493608 NUP153P49790 1475 aaKnown RBP17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms