RNA–Protein interactions for RNA: ENST00000490653.1

PRPF4B-208, Transcript of pre-mRNA processing factor 4B, humanhuman

TSL 2

Gene PRPF4B, Length 581 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF4B-208ENST00000490653 RIMBP3CA6NJZ7 1639 aa13.5□□□□□ -0.25
PRPF4B-208ENST00000490653 RIMBP3BA6NNM3 1639 aa13.5□□□□□ -0.25
PRPF4B-208ENST00000490653 RIMBP3Q9UFD9 1639 aa13.5□□□□□ -0.25
PRPF4B-208ENST00000490653 CCDC88BA6NC98 1476 aa13.5□□□□□ -0.25
PRPF4B-208ENST00000490653 PITPNM1O00562 1244 aa13.5□□□□□ -0.25
PRPF4B-208ENST00000490653 ARHGEF11O15085 1522 aa13.46□□□□□ -0.25
PRPF4B-208ENST00000490653 SP7Q8TDD2 431 aaPredicted RBP13.45□□□□□ -0.26
PRPF4B-208ENST00000490653 SPDYE2BA6NHP3 402 aa13.44□□□□□ -0.26
PRPF4B-208ENST00000490653 SPDYE6P0CI01 402 aa13.44□□□□□ -0.26
PRPF4B-208ENST00000490653 FXR2P51116 673 aaKnown RBP eCLIP13.44□□□□□ -0.26
PRPF4B-208ENST00000490653 FBLN2P98095 1184 aa13.44□□□□□ -0.26
PRPF4B-208ENST00000490653 SPDYE2Q495Y8 402 aa13.44□□□□□ -0.26
PRPF4B-208ENST00000490653 IFT140Q96RY7 1462 aa13.43□□□□□ -0.26
PRPF4B-208ENST00000490653 TOPBP1Q92547 1522 aa13.43□□□□□ -0.26
PRPF4B-208ENST00000490653 EIF4G3O43432 1585 aaKnown RBP13.37□□□□□ -0.27
PRPF4B-208ENST00000490653 AQRO60306 1485 aaKnown RBP eCLIP13.36□□□□□ -0.277e-15■■■■■ 144.3
PRPF4B-208ENST00000490653 ARAP1Q96P48 1450 aa13.36□□□□□ -0.27
PRPF4B-208ENST00000490653 MKRN4PQ13434 485 aaPredicted RBP13.35□□□□□ -0.27
PRPF4B-208ENST00000490653 CYB5RLQ6IPT4 315 aa13.35□□□□□ -0.27
PRPF4B-208ENST00000490653 TARBP1Q13395 1621 aaKnown RBP13.35□□□□□ -0.27
PRPF4B-208ENST00000490653 SUPT5HO00267 1087 aaKnown RBP13.34□□□□□ -0.27
PRPF4B-208ENST00000490653 PRDM2Q13029 1718 aa13.33□□□□□ -0.27
PRPF4B-208ENST00000490653 DNMBPQ6XZF7 1577 aa13.31□□□□□ -0.28
PRPF4B-208ENST00000490653 POLA1P09884 1462 aaPredicted RBP13.29□□□□□ -0.28
PRPF4B-208ENST00000490653 HAX1O00165 279 aa13.29□□□□□ -0.28
PRPF4B-208ENST00000490653 RAD54L2Q9Y4B4 1467 aa13.29□□□□□ -0.28
PRPF4B-208ENST00000490653 CHD1O14646 1710 aa13.27□□□□□ -0.29
PRPF4B-208ENST00000490653 TDRD9Q8NDG6 1382 aaKnown RBP13.25□□□□□ -0.29
PRPF4B-208ENST00000490653 SSUH2Q9Y2M2 353 aa13.25□□□□□ -0.29
PRPF4B-208ENST00000490653 ABCC8Q09428 1581 aa13.24□□□□□ -0.29
PRPF4B-208ENST00000490653 SPDYE1Q8NFV5 336 aaPredicted RBP13.23□□□□□ -0.29
PRPF4B-208ENST00000490653 ZNF692Q9BU19 519 aaPredicted RBP13.21□□□□□ -0.29
PRPF4B-208ENST00000490653 CLASP1Q7Z460 1538 aa13.21□□□□□ -0.29
PRPF4B-208ENST00000490653 SOGA1O94964 1423 aa13.19□□□□□ -0.3
PRPF4B-208ENST00000490653 SNAPC4Q5SXM2 1469 aa13.18□□□□□ -0.3
PRPF4B-208ENST00000490653 CLEC11AQ9Y240 323 aa13.17□□□□□ -0.3
PRPF4B-208ENST00000490653 CUX1P39880 1505 aa13.16□□□□□ -0.3
PRPF4B-208ENST00000490653 FGD5Q6ZNL6 1462 aa13.16□□□□□ -0.3
PRPF4B-208ENST00000490653 PRKAR2AP13861 404 aaKnown RBP13.14□□□□□ -0.31
PRPF4B-208ENST00000490653 EVX2Q03828 476 aa13.14□□□□□ -0.31
PRPF4B-208ENST00000490653 GRIN2BQ13224 1484 aa13.08□□□□□ -0.32
PRPF4B-208ENST00000490653 MAGI1Q96QZ7 1491 aaPredicted RBP13.08□□□□□ -0.32
PRPF4B-208ENST00000490653 SYNJ2O15056 1496 aa13.07□□□□□ -0.32
PRPF4B-208ENST00000490653 CHMP7Q8WUX9 453 aaPredicted RBP13.06□□□□□ -0.32
PRPF4B-208ENST00000490653 ERCC6L2Q5T890 1561 aa13.06□□□□□ -0.32
PRPF4B-208ENST00000490653 WDR97A6NE52 1622 aa13.05□□□□□ -0.32
PRPF4B-208ENST00000490653 SYNJ1O43426 1573 aa13.04□□□□□ -0.32
PRPF4B-208ENST00000490653 CSRNP3Q8WYN3 585 aa13.04□□□□□ -0.32
PRPF4B-208ENST00000490653 GAPVD1Q14C86 1478 aa13.04□□□□□ -0.32
PRPF4B-208ENST00000490653 C19orf67A6NJJ6 358 aa13.01□□□□□ -0.33
PRPF4B-208ENST00000490653 ABCA5Q8WWZ7 1642 aa12.99□□□□□ -0.33
PRPF4B-208ENST00000490653 ABCA10Q8WWZ4 1543 aa12.98□□□□□ -0.33
PRPF4B-208ENST00000490653 PBRM1Q86U86 1689 aa12.96□□□□□ -0.34
PRPF4B-208ENST00000490653 PRR29P0C7W0 189 aa12.95□□□□□ -0.34
PRPF4B-208ENST00000490653 CHADLQ6NUI6 762 aa12.95□□□□□ -0.34
PRPF4B-208ENST00000490653 NUP160Q12769 1436 aa12.95□□□□□ -0.34
PRPF4B-208ENST00000490653 CEP170Q5SW79 1584 aa12.94□□□□□ -0.34
PRPF4B-208ENST00000490653 GRIN2AQ12879 1464 aa12.93□□□□□ -0.34
PRPF4B-208ENST00000490653 WRNQ14191 1432 aaPredicted RBP eCLIP12.91□□□□□ -0.34
PRPF4B-208ENST00000490653 ADAMTS12P58397 1594 aa12.9□□□□□ -0.35
PRPF4B-208ENST00000490653 SHROOM2Q13796 1616 aa12.88□□□□□ -0.35
PRPF4B-208ENST00000490653 TOP2BQ02880 1626 aa12.87□□□□□ -0.35
PRPF4B-208ENST00000490653 BIVM-ERCC5R4GMW8 1640 aa12.86□□□□□ -0.35
PRPF4B-208ENST00000490653 GABBR2O75899 941 aa12.84□□□□□ -0.35
PRPF4B-208ENST00000490653 FHAD1B1AJZ9 1412 aa12.83□□□□□ -0.36
PRPF4B-208ENST00000490653 PRG4Q92954 1404 aaPredicted RBP12.79□□□□□ -0.36
PRPF4B-208ENST00000490653 KIF13AQ9H1H9 1805 aa12.78□□□□□ -0.36
PRPF4B-208ENST00000490653 FARP1Q9Y4F1 1045 aaPredicted RBP12.77□□□□□ -0.37
PRPF4B-208ENST00000490653 ERICH3Q5RHP9 1530 aa12.77□□□□□ -0.37
PRPF4B-208ENST00000490653 JPH4Q96JJ6 628 aa12.76□□□□□ -0.37
PRPF4B-208ENST00000490653 ABCC10Q5T3U5 1492 aa12.73□□□□□ -0.37
PRPF4B-208ENST00000490653 EHMT2Q96KQ7 1210 aa12.73□□□□□ -0.37
PRPF4B-208ENST00000490653 RUSC2Q8N2Y8 1516 aa12.72□□□□□ -0.37
PRPF4B-208ENST00000490653 KDM4FA0A1W2PPD8 638 aa12.72□□□□□ -0.37
PRPF4B-208ENST00000490653 CD44P16070 742 aaKnown RBP12.72□□□□□ -0.37
PRPF4B-208ENST00000490653 IGF1RP08069 1367 aa12.7□□□□□ -0.38
PRPF4B-208ENST00000490653 ADCY10Q96PN6 1610 aa12.7□□□□□ -0.38
PRPF4B-208ENST00000490653 FAM69CQ0P6D2 419 aa12.7□□□□□ -0.38
PRPF4B-208ENST00000490653 DIP2BQ9P265 1576 aa12.69□□□□□ -0.38
PRPF4B-208ENST00000490653 MAPKBP1O60336 1514 aa12.69□□□□□ -0.38
PRPF4B-208ENST00000490653 KIF27Q86VH2 1401 aa12.64□□□□□ -0.39
PRPF4B-208ENST00000490653 STAG3Q9UJ98 1225 aa12.64□□□□□ -0.39
PRPF4B-208ENST00000490653 CLCN6P51797 869 aa12.62□□□□□ -0.39
PRPF4B-208ENST00000490653 CREBZFQ9NS37 354 aa12.62□□□□□ -0.39
PRPF4B-208ENST00000490653 KIAA0586Q9BVV6 1533 aa12.62□□□□□ -0.39
PRPF4B-208ENST00000490653 SPDYE4A6NLX3 237 aa12.61□□□□□ -0.39
PRPF4B-208ENST00000490653 CARMIL1Q5VZK9 1371 aa12.6□□□□□ -0.39
PRPF4B-208ENST00000490653 LHX8Q68G74 356 aa12.6□□□□□ -0.39
PRPF4B-208ENST00000490653 POTEIP0CG38 1075 aa12.58□□□□□ -0.4
PRPF4B-208ENST00000490653 COL17A1Q9UMD9 1497 aaPredicted RBP12.58□□□□□ -0.4
PRPF4B-208ENST00000490653 KDM6BO15054 1643 aa12.57□□□□□ -0.4
PRPF4B-208ENST00000490653 ZNF579Q8NAF0 562 aaKnown RBP12.55□□□□□ -0.4
PRPF4B-208ENST00000490653 TTBK1Q5TCY1 1321 aaPredicted RBP12.55□□□□□ -0.4
PRPF4B-208ENST00000490653 PPRC1Q5VV67 1664 aaKnown RBP12.54□□□□□ -0.4
PRPF4B-208ENST00000490653 NPM1P06748 294 aaKnown RBP eCLIP12.54□□□□□ -0.4
PRPF4B-208ENST00000490653 PTPRGP23470 1445 aa12.54□□□□□ -0.4
PRPF4B-208ENST00000490653 CUL7Q14999 1698 aa12.52□□□□□ -0.4
PRPF4B-208ENST00000490653 ILDR1Q86SU0 546 aaPredicted RBP12.52□□□□□ -0.41
PRPF4B-208ENST00000490653 ABCC2Q92887 1545 aa12.52□□□□□ -0.41
PRPF4B-208ENST00000490653 ZRANB1Q9UGI0 708 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms