RNA–Protein interactions for RNA: ENST00000486446.2

PUDP-204, Transcript of pseudouridine 5'-phosphatase, human

TSL 2

Gene PUDP, Length 586 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PUDP-204	ENST00000486446	STAG3	Q9UJ98	1225 aa		13.03	□□□□□ -0.32
PUDP-204	ENST00000486446	PIP4P2	Q8N4L2	257 aa		13.02	□□□□□ -0.33
PUDP-204	ENST00000486446	POTEH	Q6S545	545 aa		13.01	□□□□□ -0.33
PUDP-204	ENST00000486446	RSF1	Q96T23	1441 aa	Predicted RBP	13.01	□□□□□ -0.33
PUDP-204	ENST00000486446	LAMC3	Q9Y6N6	1575 aa		13	□□□□□ -0.33
PUDP-204	ENST00000486446	PRR29	P0C7W0	189 aa		12.98	□□□□□ -0.33
PUDP-204	ENST00000486446	TOP2A	P11388	1531 aa	Known RBP	12.93	□□□□□ -0.34
PUDP-204	ENST00000486446	PDS5B	Q9NTI5	1447 aa		12.92	□□□□□ -0.34
PUDP-204	ENST00000486446	CADPS	Q9ULU8	1353 aa		12.92	□□□□□ -0.34
PUDP-204	ENST00000486446	KIF21A	Q7Z4S6	1674 aa		12.91	□□□□□ -0.34
PUDP-204	ENST00000486446	THOC2	Q8NI27	1593 aa	Known RBP	12.89	□□□□□ -0.35
PUDP-204	ENST00000486446	PRKAR2A	P13861	404 aa	Known RBP	12.87	□□□□□ -0.35
PUDP-204	ENST00000486446	CHADL	Q6NUI6	762 aa		12.82	□□□□□ -0.36
PUDP-204	ENST00000486446	CREBZF	Q9NS37	354 aa		12.82	□□□□□ -0.36
PUDP-204	ENST00000486446	CFTR	P13569	1480 aa		12.8	□□□□□ -0.36
PUDP-204	ENST00000486446	MRC2	Q9UBG0	1479 aa		12.8	□□□□□ -0.36
PUDP-204	ENST00000486446	CEP164	Q9UPV0	1460 aa		12.79	□□□□□ -0.36
PUDP-204	ENST00000486446	FBXO3	Q9UK99	471 aa		12.79	□□□□□ -0.36
PUDP-204	ENST00000486446	FANCD2	Q9BXW9	1451 aa		12.78	□□□□□ -0.36
PUDP-204	ENST00000486446	CCDC88B	A6NC98	1476 aa		12.78	□□□□□ -0.36
PUDP-204	ENST00000486446	WDR62	O43379	1518 aa		12.75	□□□□□ -0.37
PUDP-204	ENST00000486446	PRDM2	Q13029	1718 aa		12.74	□□□□□ -0.37
PUDP-204	ENST00000486446	FARP1	Q9Y4F1	1045 aa	Predicted RBP	12.71	□□□□□ -0.37
PUDP-204	ENST00000486446	MNX1	P50219	401 aa	Predicted RBP	12.7	□□□□□ -0.38
PUDP-204	ENST00000486446	MIER1	Q8N108	512 aa		12.68	□□□□□ -0.38
PUDP-204	ENST00000486446	URB2	Q14146	1524 aa	Known RBP	12.66	□□□□□ -0.38
PUDP-204	ENST00000486446	SUPT5H	O00267	1087 aa	Known RBP	12.63	□□□□□ -0.39
PUDP-204	ENST00000486446	VASP	P50552	380 aa	Predicted RBP	12.62	□□□□□ -0.39
PUDP-204	ENST00000486446	PLCD3	Q8N3E9	789 aa		12.62	□□□□□ -0.39
PUDP-204	ENST00000486446	C19orf67	A6NJJ6	358 aa		12.61	□□□□□ -0.39
PUDP-204	ENST00000486446	HAX1	O00165	279 aa		12.6	□□□□□ -0.39
PUDP-204	ENST00000486446	PLEKHG5	O94827	1062 aa		12.6	□□□□□ -0.39
PUDP-204	ENST00000486446	NPM1	P06748	294 aa	Known RBP eCLIP	12.57	□□□□□ -0.4
PUDP-204	ENST00000486446	TOPBP1	Q92547	1522 aa		12.57	□□□□□ -0.4
PUDP-204	ENST00000486446	ABCC8	Q09428	1581 aa		12.56	□□□□□ -0.4
PUDP-204	ENST00000486446	EVX2	Q03828	476 aa		12.55	□□□□□ -0.4
PUDP-204	ENST00000486446	DNMBP	Q6XZF7	1577 aa		12.55	□□□□□ -0.4
PUDP-204	ENST00000486446	CYB5RL	Q6IPT4	315 aa		12.53	□□□□□ -0.4
PUDP-204	ENST00000486446	IFT140	Q96RY7	1462 aa		12.53	□□□□□ -0.4
PUDP-204	ENST00000486446	ZBTB47	Q9UFB7	747 aa	Predicted RBP	12.52	□□□□□ -0.41
PUDP-204	ENST00000486446	RIMBP3C	A6NJZ7	1639 aa		12.51	□□□□□ -0.41
PUDP-204	ENST00000486446	RIMBP3B	A6NNM3	1639 aa		12.51	□□□□□ -0.41
PUDP-204	ENST00000486446	RIMBP3	Q9UFD9	1639 aa		12.51	□□□□□ -0.41
PUDP-204	ENST00000486446	CD44	P16070	742 aa	Known RBP	12.49	□□□□□ -0.41
PUDP-204	ENST00000486446	ZNF608	Q9ULD9	1512 aa	Predicted RBP	12.47	□□□□□ -0.41
PUDP-204	ENST00000486446	IFNLR1	Q8IU57	520 aa	Predicted RBP	12.45	□□□□□ -0.42
PUDP-204	ENST00000486446	POLA1	P09884	1462 aa	Predicted RBP	12.44	□□□□□ -0.42
PUDP-204	ENST00000486446	TARBP1	Q13395	1621 aa	Known RBP	12.44	□□□□□ -0.42
PUDP-204	ENST00000486446	EIF4G3	O43432	1585 aa	Known RBP	12.43	□□□□□ -0.42
PUDP-204	ENST00000486446	NUBP1	P53384	320 aa		12.43	□□□□□ -0.42
PUDP-204	ENST00000486446	SP7	Q8TDD2	431 aa	Predicted RBP	12.43	□□□□□ -0.42
PUDP-204	ENST00000486446	ARHGEF11	O15085	1522 aa		12.42	□□□□□ -0.42
PUDP-204	ENST00000486446	CUX1	P39880	1505 aa		12.42	□□□□□ -0.42
PUDP-204	ENST00000486446	FGD5	Q6ZNL6	1462 aa		12.41	□□□□□ -0.42
PUDP-204	ENST00000486446	SOGA1	O94964	1423 aa		12.41	□□□□□ -0.42
PUDP-204	ENST00000486446	RAD54L2	Q9Y4B4	1467 aa		12.4	□□□□□ -0.42
PUDP-204	ENST00000486446	RASEF	Q8IZ41	740 aa		12.4	□□□□□ -0.42
PUDP-204	ENST00000486446	KLHL34	Q8N239	644 aa		12.4	□□□□□ -0.42
PUDP-204	ENST00000486446	ZRANB1	Q9UGI0	708 aa		12.39	□□□□□ -0.43
PUDP-204	ENST00000486446	AQR	O60306	1485 aa	Known RBP eCLIP	12.39	□□□□□ -0.43
PUDP-204	ENST00000486446	PAK3	O75914	559 aa	Predicted RBP	12.37	□□□□□ -0.43
PUDP-204	ENST00000486446	ZNF579	Q8NAF0	562 aa	Known RBP	12.36	□□□□□ -0.43
PUDP-204	ENST00000486446	TDRD9	Q8NDG6	1382 aa	Known RBP	12.35	□□□□□ -0.43
PUDP-204	ENST00000486446	ILDR1	Q86SU0	546 aa	Predicted RBP	12.34	□□□□□ -0.43
PUDP-204	ENST00000486446	TSPYL2	Q9H2G4	693 aa	Predicted RBP	12.33	□□□□□ -0.44
PUDP-204	ENST00000486446	CHD1	O14646	1710 aa		12.32	□□□□□ -0.44
PUDP-204	ENST00000486446	SPOCK2	Q92563	424 aa		12.32	□□□□□ -0.44
PUDP-204	ENST00000486446	WDR97	A6NE52	1622 aa		12.32	□□□□□ -0.44
PUDP-204	ENST00000486446	CCDC61	Q9Y6R9	512 aa		12.31	□□□□□ -0.44
PUDP-204	ENST00000486446	WRN	Q14191	1432 aa	Predicted RBP eCLIP	12.29	□□□□□ -0.44
PUDP-204	ENST00000486446	CLCN6	P51797	869 aa		12.29	□□□□□ -0.44
PUDP-204	ENST00000486446	SNAPC4	Q5SXM2	1469 aa		12.28	□□□□□ -0.44
PUDP-204	ENST00000486446	GABBR2	O75899	941 aa		12.28	□□□□□ -0.44
PUDP-204	ENST00000486446	BIVM-ERCC5	R4GMW8	1640 aa		12.28	□□□□□ -0.44
PUDP-204	ENST00000486446	GRIN2B	Q13224	1484 aa		12.27	□□□□□ -0.44
PUDP-204	ENST00000486446	TOP2B	Q02880	1626 aa		12.27	□□□□□ -0.44
PUDP-204	ENST00000486446	FAM212A	Q96EL1	285 aa		12.27	□□□□□ -0.45
PUDP-204	ENST00000486446	SYNJ1	O43426	1573 aa		12.26	□□□□□ -0.45
PUDP-204	ENST00000486446	PBRM1	Q86U86	1689 aa		12.26	□□□□□ -0.45
PUDP-204	ENST00000486446	PHF12	Q96QT6	1004 aa		12.26	□□□□□ -0.45
PUDP-204	ENST00000486446	GAPVD1	Q14C86	1478 aa		12.26	□□□□□ -0.45
PUDP-204	ENST00000486446	ARAP1	Q96P48	1450 aa		12.26	□□□□□ -0.45
PUDP-204	ENST00000486446	ABCA10	Q8WWZ4	1543 aa		12.26	□□□□□ -0.45
PUDP-204	ENST00000486446	MAGI1	Q96QZ7	1491 aa	Predicted RBP	12.25	□□□□□ -0.45
PUDP-204	ENST00000486446	ABCA5	Q8WWZ7	1642 aa		12.23	□□□□□ -0.45
PUDP-204	ENST00000486446	DCAF8	Q5TAQ9	597 aa		12.23	□□□□□ -0.45
PUDP-204	ENST00000486446	CHMP7	Q8WUX9	453 aa	Predicted RBP	12.23	□□□□□ -0.45
PUDP-204	ENST00000486446	GSE1	Q14687	1217 aa		12.21	□□□□□ -0.45
PUDP-204	ENST00000486446	SYNJ2	O15056	1496 aa		12.21	□□□□□ -0.46
PUDP-204	ENST00000486446	KIF12	Q96FN5	646 aa		12.2	□□□□□ -0.46
PUDP-204	ENST00000486446	CLASP1	Q7Z460	1538 aa		12.16	□□□□□ -0.46
PUDP-204	ENST00000486446	GALR2	O43603	387 aa	Predicted RBP	12.15	□□□□□ -0.46
PUDP-204	ENST00000486446	ADAMTS12	P58397	1594 aa		12.14	□□□□□ -0.47
PUDP-204	ENST00000486446	MAP3K13	O43283	966 aa		12.13	□□□□□ -0.47
PUDP-204	ENST00000486446	CHRM1	P11229	460 aa	Predicted RBP	12.12	□□□□□ -0.47
PUDP-204	ENST00000486446	MS4A3	Q96HJ5	214 aa		12.12	□□□□□ -0.47
PUDP-204	ENST00000486446	SGIP1	Q9BQI5	828 aa		12.12	□□□□□ -0.47
PUDP-204	ENST00000486446	CIZ1	Q9ULV3	898 aa	Predicted RBP	12.12	□□□□□ -0.47
PUDP-204	ENST00000486446	ERICH3	Q5RHP9	1530 aa		12.11	□□□□□ -0.47
PUDP-204	ENST00000486446	GRIN2A	Q12879	1464 aa		12.11	□□□□□ -0.47

Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms