RNA–Protein interactions for RNA: ENST00000486446.2

PUDP-204, Transcript of pseudouridine 5'-phosphatase, human

TSL 2

Gene PUDP, Length 586 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PUDP-204	ENST00000486446	AEBP2	Q6ZN18	517 aa	Predicted RBP	24.32	■■□□□ 1.48
PUDP-204	ENST00000486446	CHIC1	Q5VXU3	224 aa		23.56	■■□□□ 1.36
PUDP-204	ENST00000486446	PHF23	Q9BUL5	403 aa	Predicted RBP	20.72	■□□□□ 0.91
PUDP-204	ENST00000486446	SENP3	Q9H4L4	574 aa	Predicted RBP	20.64	■□□□□ 0.89
PUDP-204	ENST00000486446	FOXD1	Q16676	465 aa		19.19	■□□□□ 0.66
PUDP-204	ENST00000486446	PLPPR3	Q6T4P5	718 aa		19.03	■□□□□ 0.64
PUDP-204	ENST00000486446	PPP6R1	Q9UPN7	881 aa		18.34	■□□□□ 0.53
PUDP-204	ENST00000486446	ADRA2B	P18089	450 aa		18.28	■□□□□ 0.52
PUDP-204	ENST00000486446	PIAS4	Q8N2W9	510 aa	Predicted RBP	18	■□□□□ 0.47
PUDP-204	ENST00000486446	MSH5	O43196	834 aa		17.75	■□□□□ 0.43
PUDP-204	ENST00000486446	NISCH	Q9Y2I1	1504 aa		17.16	■□□□□ 0.34
PUDP-204	ENST00000486446	PPP4R3CP	Q6ZMV5	832 aa		16.75	■□□□□ 0.27
PUDP-204	ENST00000486446	SCAF1	Q9H7N4	1312 aa	Known RBP	16.71	■□□□□ 0.27
PUDP-204	ENST00000486446	MAPK8IP2	Q13387	824 aa	Predicted RBP	16.64	■□□□□ 0.25
PUDP-204	ENST00000486446	POTED	Q86YR6	584 aa		16.49	■□□□□ 0.23
PUDP-204	ENST00000486446	DMRT2	Q9Y5R5	561 aa		16.47	■□□□□ 0.23
PUDP-204	ENST00000486446	CNKSR2	Q8WXI2	1034 aa		16.33	■□□□□ 0.2
PUDP-204	ENST00000486446	NCBP3	Q53F19	620 aa	Known RBP	16.24	■□□□□ 0.19
PUDP-204	ENST00000486446	KCNA4	P22459	653 aa		16.15	■□□□□ 0.18
PUDP-204	ENST00000486446	HOXD11	P31277	338 aa	Predicted RBP	16.07	■□□□□ 0.16
PUDP-204	ENST00000486446	RNF216	Q9NWF9	866 aa	Predicted RBP	16.06	■□□□□ 0.16
PUDP-204	ENST00000486446	NPM3	O75607	178 aa	Known RBP	16.03	■□□□□ 0.16
PUDP-204	ENST00000486446	DNAJC5B	Q9UF47	199 aa		15.69	■□□□□ 0.1
PUDP-204	ENST00000486446	DCAF8L1	A6NGE4	600 aa		15.65	■□□□□ 0.1
PUDP-204	ENST00000486446	CCDC180	Q9P1Z9	1646 aa		15.33	■□□□□ 0.04
PUDP-204	ENST00000486446	SLC4A1AP	Q9BWU0	796 aa	Known RBP	15.32	■□□□□ 0.04
PUDP-204	ENST00000486446	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	15.24	■□□□□ 0.03
PUDP-204	ENST00000486446	RNF39	Q9H2S5	420 aa		15.22	■□□□□ 0.03
PUDP-204	ENST00000486446	ABCC9	O60706	1549 aa		15.21	■□□□□ 0.03
PUDP-204	ENST00000486446	SLC4A2	P04920	1241 aa		15.2	■□□□□ 0.02
PUDP-204	ENST00000486446	C1QBP	Q07021	282 aa	Known RBP	15.02	■□□□□ -0
PUDP-204	ENST00000486446		U3KPZ7	1027 aa	Predicted RBP	15.01	□□□□□ -0.01
PUDP-204	ENST00000486446	FOXD4L1	Q9NU39	408 aa		14.91	□□□□□ -0.02
PUDP-204	ENST00000486446	CACNB1	Q02641	598 aa	Predicted RBP	14.89	□□□□□ -0.03
PUDP-204	ENST00000486446	ZBTB22	O15209	634 aa		14.87	□□□□□ -0.03
PUDP-204	ENST00000486446	MYCN	P04198	464 aa	Predicted RBP	14.8	□□□□□ -0.04
PUDP-204	ENST00000486446	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	14.74	□□□□□ -0.05
PUDP-204	ENST00000486446	HNRNPUL2	Q1KMD3	747 aa	Known RBP	14.74	□□□□□ -0.05
PUDP-204	ENST00000486446	SAMD1	Q6SPF0	538 aa	Predicted RBP	14.69	□□□□□ -0.06
PUDP-204	ENST00000486446	CSRNP3	Q8WYN3	585 aa		14.63	□□□□□ -0.07
PUDP-204	ENST00000486446	SPINK5	Q9NQ38	1064 aa	Predicted RBP	14.63	□□□□□ -0.07
PUDP-204	ENST00000486446	APLP2	Q06481	763 aa		14.62	□□□□□ -0.07
PUDP-204	ENST00000486446	EHMT2	Q96KQ7	1210 aa		14.62	□□□□□ -0.07
PUDP-204	ENST00000486446	CAPN15	O75808	1086 aa		14.54	□□□□□ -0.08
PUDP-204	ENST00000486446	RB1CC1	Q8TDY2	1594 aa		14.51	□□□□□ -0.09
PUDP-204	ENST00000486446	DCAF8L2	P0C7V8	631 aa		14.46	□□□□□ -0.09
PUDP-204	ENST00000486446	ATXN8OS	P0DMR3	200 aa		14.45	□□□□□ -0.1
PUDP-204	ENST00000486446	ZNF219	Q9P2Y4	722 aa	Predicted RBP	14.45	□□□□□ -0.1
PUDP-204	ENST00000486446	ATF5	Q9Y2D1	282 aa	Predicted RBP	14.44	□□□□□ -0.1
PUDP-204	ENST00000486446	NACAD	O15069	1562 aa		14.43	□□□□□ -0.1
PUDP-204	ENST00000486446	TRH	P20396	242 aa	Predicted RBP	14.43	□□□□□ -0.1
PUDP-204	ENST00000486446	DSG3	P32926	999 aa		14.41	□□□□□ -0.1
PUDP-204	ENST00000486446	MYO15B	Q96JP2	1530 aa		14.26	□□□□□ -0.13
PUDP-204	ENST00000486446	ABCB7	O75027	752 aa		14.26	□□□□□ -0.13
PUDP-204	ENST00000486446	ZCCHC6	Q5VYS8	1495 aa	Known RBP	14.25	□□□□□ -0.13
PUDP-204	ENST00000486446	DNAJC5	Q9H3Z4	198 aa		14.24	□□□□□ -0.13
PUDP-204	ENST00000486446	POLA2	Q14181	598 aa		14.19	□□□□□ -0.14
PUDP-204	ENST00000486446	UNC13A	Q9UPW8	1703 aa		14.17	□□□□□ -0.14
PUDP-204	ENST00000486446	DCAF1	Q9Y4B6	1507 aa		14.16	□□□□□ -0.14
PUDP-204	ENST00000486446	PABPN1	Q86U42	306 aa	Known RBP eCLIP	14.15	□□□□□ -0.14
PUDP-204	ENST00000486446	BICRA	Q9NZM4	1560 aa		14.05	□□□□□ -0.16
PUDP-204	ENST00000486446	SCRIB	Q14160	1630 aa		14	□□□□□ -0.17
PUDP-204	ENST00000486446	ZBTB12	Q9Y330	459 aa	Predicted RBP	13.94	□□□□□ -0.18
PUDP-204	ENST00000486446	SHROOM4	Q9ULL8	1493 aa		13.87	□□□□□ -0.19
PUDP-204	ENST00000486446	MKRN4P	Q13434	485 aa	Predicted RBP	13.81	□□□□□ -0.2
PUDP-204	ENST00000486446	FBLN2	P98095	1184 aa		13.79	□□□□□ -0.2
PUDP-204	ENST00000486446	CECR2	Q9BXF3	1484 aa		13.76	□□□□□ -0.21
PUDP-204	ENST00000486446	OSCAR	Q8IYS5	282 aa		13.7	□□□□□ -0.22
PUDP-204	ENST00000486446	RBM42	Q9BTD8	480 aa	Known RBP	13.7	□□□□□ -0.22
PUDP-204	ENST00000486446	EIF4G1	Q04637	1599 aa	Known RBP	13.7	□□□□□ -0.22
PUDP-204	ENST00000486446	CC2D2A	Q9P2K1	1620 aa		13.69	□□□□□ -0.22
PUDP-204	ENST00000486446	SPDYE2B	A6NHP3	402 aa		13.57	□□□□□ -0.24
PUDP-204	ENST00000486446	SPDYE6	P0CI01	402 aa		13.57	□□□□□ -0.24
PUDP-204	ENST00000486446	SPDYE2	Q495Y8	402 aa		13.57	□□□□□ -0.24
PUDP-204	ENST00000486446	AKT1S1	Q96B36	256 aa		13.52	□□□□□ -0.25
PUDP-204	ENST00000486446	SSUH2	Q9Y2M2	353 aa		13.47	□□□□□ -0.25
PUDP-204	ENST00000486446	ZNF692	Q9BU19	519 aa	Predicted RBP	13.46	□□□□□ -0.25
PUDP-204	ENST00000486446	TRIM41	Q8WV44	630 aa		13.4	□□□□□ -0.26
PUDP-204	ENST00000486446	REM2	Q8IYK8	340 aa	Predicted RBP	13.39	□□□□□ -0.27
PUDP-204	ENST00000486446	SPDYE4	A6NLX3	237 aa		13.37	□□□□□ -0.27
PUDP-204	ENST00000486446	SMARCA4	P51532	1647 aa		13.35	□□□□□ -0.27
PUDP-204	ENST00000486446	CUX2	O14529	1486 aa		13.32	□□□□□ -0.28
PUDP-204	ENST00000486446	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	13.32	□□□□□ -0.28
PUDP-204	ENST00000486446	NCAPD3	P42695	1498 aa		13.3	□□□□□ -0.28
PUDP-204	ENST00000486446	ATAD2B	Q9ULI0	1458 aa		13.3	□□□□□ -0.28
PUDP-204	ENST00000486446	SMARCA2	P51531	1590 aa		13.29	□□□□□ -0.28
PUDP-204	ENST00000486446	HMGXB3	Q12766	1538 aa		13.23	□□□□□ -0.29
PUDP-204	ENST00000486446	PITPNM1	O00562	1244 aa		13.23	□□□□□ -0.29
PUDP-204	ENST00000486446	MROH2B	Q7Z745	1585 aa		13.23	□□□□□ -0.29
PUDP-204	ENST00000486446	CHRDL2	Q6WN34	429 aa		13.21	□□□□□ -0.29
PUDP-204	ENST00000486446	BAZ1B	Q9UIG0	1483 aa	Known RBP	13.21	□□□□□ -0.3
PUDP-204	ENST00000486446	PROM2	Q8N271	834 aa		13.2	□□□□□ -0.3
PUDP-204	ENST00000486446	SPDYE1	Q8NFV5	336 aa	Predicted RBP	13.2	□□□□□ -0.3
PUDP-204	ENST00000486446	PEG3	Q9GZU2	1588 aa		13.19	□□□□□ -0.3
PUDP-204	ENST00000486446	ERCC6	Q03468	1493 aa		13.18	□□□□□ -0.3
PUDP-204	ENST00000486446	FKBP8	Q14318	412 aa		13.18	□□□□□ -0.3
PUDP-204	ENST00000486446	CLEC11A	Q9Y240	323 aa		13.1	□□□□□ -0.31
PUDP-204	ENST00000486446	WIZ	O95785	1651 aa		13.09	□□□□□ -0.31
PUDP-204	ENST00000486446	NES	P48681	1621 aa		13.06	□□□□□ -0.32
PUDP-204	ENST00000486446	FXR2	P51116	673 aa	Known RBP eCLIP	13.05	□□□□□ -0.32

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