RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 IFT140Q96RY7 1462 aa19.22■□□□□ 0.67
USP40-214ENST00000483519 POLA1P09884 1462 aaPredicted RBP19.21■□□□□ 0.67
USP40-214ENST00000483519 FGD5Q6ZNL6 1462 aa19.21■□□□□ 0.67
USP40-214ENST00000483519 PRXQ9BXM0 1461 aa19.21■□□□□ 0.67
USP40-214ENST00000483519 KIF27Q86VH2 1401 aa19.18■□□□□ 0.66
USP40-214ENST00000483519 TSHZ2Q9NRE2 1034 aa19.17■□□□□ 0.66
USP40-214ENST00000483519 RANGAP1P46060 587 aaPredicted RBP19.14■□□□□ 0.65
USP40-214ENST00000483519 RRBP1Q9P2E9 1410 aaKnown RBP19.14■□□□□ 0.65
USP40-214ENST00000483519 ANP32EQ9BTT0 268 aa19.13■□□□□ 0.65
USP40-214ENST00000483519 ARAP1Q96P48 1450 aa19.13■□□□□ 0.65
USP40-214ENST00000483519 TARBP1Q13395 1621 aaKnown RBP19.12■□□□□ 0.65
USP40-214ENST00000483519 RAD54L2Q9Y4B4 1467 aa19.1■□□□□ 0.65
USP40-214ENST00000483519 WDR97A6NE52 1622 aa19.07■□□□□ 0.64
USP40-214ENST00000483519 ABCA10Q8WWZ4 1543 aa19.07■□□□□ 0.64
USP40-214ENST00000483519 KANK4Q5T7N3 995 aaPredicted RBP19.04■□□□□ 0.64
USP40-214ENST00000483519 CCNB3Q8WWL7 1395 aa19.02■□□□□ 0.64
USP40-214ENST00000483519 ZNF608Q9ULD9 1512 aaPredicted RBP19.02■□□□□ 0.64
USP40-214ENST00000483519 TDRD9Q8NDG6 1382 aaKnown RBP19■□□□□ 0.63
USP40-214ENST00000483519 CUL7Q14999 1698 aa18.99■□□□□ 0.63
USP40-214ENST00000483519 EIF4G3O43432 1585 aaKnown RBP18.98■□□□□ 0.63
USP40-214ENST00000483519 AQRO60306 1485 aaKnown RBP eCLIP18.97■□□□□ 0.63
USP40-214ENST00000483519 GAPVD1Q14C86 1478 aa18.96■□□□□ 0.63
USP40-214ENST00000483519 GRIN2BQ13224 1484 aa18.93■□□□□ 0.62
USP40-214ENST00000483519 ABCA5Q8WWZ7 1642 aa18.93■□□□□ 0.62
USP40-214ENST00000483519 MAPKBP1O60336 1514 aa18.92■□□□□ 0.62
USP40-214ENST00000483519 RAB3GAP2Q9H2M9 1393 aa18.9■□□□□ 0.62
USP40-214ENST00000483519 KCNH8Q96L42 1107 aa18.9■□□□□ 0.62
USP40-214ENST00000483519 IGF1RP08069 1367 aa18.89■□□□□ 0.62
USP40-214ENST00000483519 FKBP8Q14318 412 aa18.88■□□□□ 0.61
USP40-214ENST00000483519 PLPPR3Q6T4P5 718 aa18.88■□□□□ 0.61
USP40-214ENST00000483519 ARHGAP35Q9NRY4 1499 aa18.87■□□□□ 0.61
USP40-214ENST00000483519 BCANQ96GW7 911 aa18.87■□□□□ 0.61
USP40-214ENST00000483519 ERICH6Q7L0X2 663 aa18.87■□□□□ 0.61
USP40-214ENST00000483519 PBRM1Q86U86 1689 aa18.86■□□□□ 0.61
USP40-214ENST00000483519 NEFLP07196 543 aa18.86■□□□□ 0.61
USP40-214ENST00000483519 MAGI1Q96QZ7 1491 aaPredicted RBP18.86■□□□□ 0.61
USP40-214ENST00000483519 ITGAEP38570 1179 aa18.85■□□□□ 0.61
USP40-214ENST00000483519 MAP3K1Q13233 1512 aa18.85■□□□□ 0.61
USP40-214ENST00000483519 SETD5Q9C0A6 1442 aa18.83■□□□□ 0.6
USP40-214ENST00000483519 SNAPC4Q5SXM2 1469 aa18.82■□□□□ 0.6
USP40-214ENST00000483519 BCL11AQ9H165 835 aa18.81■□□□□ 0.6
USP40-214ENST00000483519 TIAM1Q13009 1591 aa18.8■□□□□ 0.6
USP40-214ENST00000483519 DDX10Q13206 875 aaKnown RBP18.8■□□□□ 0.6
USP40-214ENST00000483519 EFCAB5A4FU69 1503 aa18.79■□□□□ 0.6
USP40-214ENST00000483519 CARMIL1Q5VZK9 1371 aa18.79■□□□□ 0.6
USP40-214ENST00000483519 TIMELESSQ9UNS1 1208 aa18.79■□□□□ 0.6
USP40-214ENST00000483519 CCER2I3L3R5 266 aa18.77■□□□□ 0.6
USP40-214ENST00000483519 FHAD1B1AJZ9 1412 aa18.77■□□□□ 0.59
USP40-214ENST00000483519 SYNJ2O15056 1496 aa18.77■□□□□ 0.59
USP40-214ENST00000483519 CTTNBP2Q8WZ74 1663 aa18.76■□□□□ 0.59
USP40-214ENST00000483519 CHMP7Q8WUX9 453 aaPredicted RBP18.76■□□□□ 0.59
USP40-214ENST00000483519 RBM19Q9Y4C8 960 aaKnown RBP18.76■□□□□ 0.59
USP40-214ENST00000483519 PPP1R15AO75807 674 aaPredicted RBP18.75■□□□□ 0.59
USP40-214ENST00000483519 ADAMTS12P58397 1594 aa18.74■□□□□ 0.59
USP40-214ENST00000483519 FBLN2P98095 1184 aa18.73■□□□□ 0.59
USP40-214ENST00000483519 LRRC9Q6ZRR7 1453 aa18.71■□□□□ 0.59
USP40-214ENST00000483519 ANP32CO43423 234 aa18.71■□□□□ 0.59
USP40-214ENST00000483519 OSCARQ8IYS5 282 aa18.69■□□□□ 0.58
USP40-214ENST00000483519 CHD1O14646 1710 aa18.69■□□□□ 0.58
USP40-214ENST00000483519 SIN3AQ96ST3 1273 aa18.68■□□□□ 0.58
USP40-214ENST00000483519 RTN4Q9NQC3 1192 aaKnown RBP18.67■□□□□ 0.58
USP40-214ENST00000483519 GRIN2AQ12879 1464 aa18.66■□□□□ 0.58
USP40-214ENST00000483519 PHLDB1Q86UU1 1377 aa18.66■□□□□ 0.58
USP40-214ENST00000483519 CFAP43Q8NDM7 1665 aa18.65■□□□□ 0.58
USP40-214ENST00000483519 TRIM52Q96A61 297 aa18.65■□□□□ 0.58
USP40-214ENST00000483519 FAM50AQ14320 339 aaKnown RBP18.63■□□□□ 0.57
USP40-214ENST00000483519 NCBP3Q53F19 620 aaKnown RBP18.62■□□□□ 0.57
USP40-214ENST00000483519 SAMD9Q5K651 1589 aa18.61■□□□□ 0.57
USP40-214ENST00000483519 NUP160Q12769 1436 aa18.57■□□□□ 0.56
USP40-214ENST00000483519 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.56■□□□□ 0.56
USP40-214ENST00000483519 FYCO1Q9BQS8 1478 aa18.56■□□□□ 0.56
USP40-214ENST00000483519 PCF11O94913 1555 aaKnown RBP18.55■□□□□ 0.56
USP40-214ENST00000483519 HIRIP3Q9BW71 556 aaPredicted RBP18.55■□□□□ 0.56
USP40-214ENST00000483519 FANCIQ9NVI1 1328 aa18.55■□□□□ 0.56
USP40-214ENST00000483519 TONSLQ96HA7 1378 aa18.54■□□□□ 0.56
USP40-214ENST00000483519 CEP170Q5SW79 1584 aa18.51■□□□□ 0.55
USP40-214ENST00000483519 CDK11AQ9UQ88 783 aaPredicted RBP18.51■□□□□ 0.55
USP40-214ENST00000483519 CLASP1Q7Z460 1538 aa18.5■□□□□ 0.55
USP40-214ENST00000483519 MSH5O43196 834 aa18.5■□□□□ 0.55
USP40-214ENST00000483519 CASKIN1Q8WXD9 1431 aa18.49■□□□□ 0.55
USP40-214ENST00000483519 KIAA0586Q9BVV6 1533 aa18.49■□□□□ 0.55
USP40-214ENST00000483519 FMN1Q68DA7 1419 aa18.49■□□□□ 0.55
USP40-214ENST00000483519 DNAJC5Q9H3Z4 198 aa18.49■□□□□ 0.55
USP40-214ENST00000483519 ERICH6BQ5W0A0 696 aa18.45■□□□□ 0.54
USP40-214ENST00000483519 CCDC18Q5T9S5 1454 aa18.45■□□□□ 0.54
USP40-214ENST00000483519 HNRNPUQ00839 825 aaKnown RBP eCLIP18.44■□□□□ 0.54
USP40-214ENST00000483519 UACAQ9BZF9 1416 aa18.43■□□□□ 0.54
USP40-214ENST00000483519 UGGT2Q9NYU1 1516 aa18.42■□□□□ 0.54
USP40-214ENST00000483519 FGD6Q6ZV73 1430 aa18.41■□□□□ 0.54
USP40-214ENST00000483519 JPH4Q96JJ6 628 aa18.41■□□□□ 0.54
USP40-214ENST00000483519 ATP1B4Q9UN42 357 aaPredicted RBP18.41■□□□□ 0.54
USP40-214ENST00000483519 IQGAP2Q13576 1575 aa18.4■□□□□ 0.54
USP40-214ENST00000483519 MYT1LQ9UL68 1186 aa18.4■□□□□ 0.54
USP40-214ENST00000483519 HFM1A2PYH4 1435 aa18.4■□□□□ 0.54
USP40-214ENST00000483519 SHROOM2Q13796 1616 aa18.38■□□□□ 0.53
USP40-214ENST00000483519 PTPN23Q9H3S7 1636 aa18.38■□□□□ 0.53
USP40-214ENST00000483519 FHOD3Q2V2M9 1422 aa18.37■□□□□ 0.53
USP40-214ENST00000483519 P3H3Q8IVL6 736 aa18.36■□□□□ 0.53
USP40-214ENST00000483519 PPP4R2Q9NY27 417 aa18.35■□□□□ 0.53
USP40-214ENST00000483519 IRX6P78412 446 aaPredicted RBP18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms