RNA–Protein interactions for RNA: ENST00000482878.5

CCDC78-213, Transcript of coiled-coil domain containing 78, humanhuman

TSL 2

Gene CCDC78, Length 3,458 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-213ENST00000482878 CARMIL1Q5VZK9 1371 aa17.75■□□□□ 0.43
CCDC78-213ENST00000482878 TIAM1Q13009 1591 aa17.75■□□□□ 0.43
CCDC78-213ENST00000482878 MAP3K1Q13233 1512 aa17.72■□□□□ 0.43
CCDC78-213ENST00000482878 PHLDB1Q86UU1 1377 aa17.72■□□□□ 0.43
CCDC78-213ENST00000482878 LRRC9Q6ZRR7 1453 aa17.71■□□□□ 0.43
CCDC78-213ENST00000482878 SETD5Q9C0A6 1442 aa17.71■□□□□ 0.43
CCDC78-213ENST00000482878 KCNH8Q96L42 1107 aa17.71■□□□□ 0.43
CCDC78-213ENST00000482878 CADPSQ9ULU8 1353 aa17.7■□□□□ 0.42
CCDC78-213ENST00000482878 FGD5Q6ZNL6 1462 aa17.69■□□□□ 0.42
CCDC78-213ENST00000482878 FAM50AQ14320 339 aaKnown RBP17.67■□□□□ 0.42
CCDC78-213ENST00000482878 SIN3AQ96ST3 1273 aa17.67■□□□□ 0.42
CCDC78-213ENST00000482878 ERICH6Q7L0X2 663 aa17.64■□□□□ 0.41
CCDC78-213ENST00000482878 DNAJC5BQ9UF47 199 aa17.64■□□□□ 0.41
CCDC78-213ENST00000482878 PRDM2Q13029 1718 aa17.64■□□□□ 0.41
CCDC78-213ENST00000482878 ARID3CA6NKF2 412 aa17.63■□□□□ 0.41
CCDC78-213ENST00000482878 FHAD1B1AJZ9 1412 aa17.63■□□□□ 0.41
CCDC78-213ENST00000482878 WDR97A6NE52 1622 aa17.6■□□□□ 0.41
CCDC78-213ENST00000482878 DDX10Q13206 875 aaKnown RBP17.59■□□□□ 0.41
CCDC78-213ENST00000482878 FKBP8Q14318 412 aa17.59■□□□□ 0.41
CCDC78-213ENST00000482878 PCF11O94913 1555 aaKnown RBP17.59■□□□□ 0.41
CCDC78-213ENST00000482878 RBM19Q9Y4C8 960 aaKnown RBP17.58■□□□□ 0.41
CCDC78-213ENST00000482878 FHOD3Q2V2M9 1422 aa17.57■□□□□ 0.4
CCDC78-213ENST00000482878 CFAP43Q8NDM7 1665 aa17.55■□□□□ 0.4
CCDC78-213ENST00000482878 NEFLP07196 543 aa17.53■□□□□ 0.4
CCDC78-213ENST00000482878 PPP1R15AO75807 674 aaPredicted RBP17.53■□□□□ 0.4
CCDC78-213ENST00000482878 RAD54L2Q9Y4B4 1467 aa17.53■□□□□ 0.4
CCDC78-213ENST00000482878 HIRIP3Q9BW71 556 aaPredicted RBP17.52■□□□□ 0.4
CCDC78-213ENST00000482878 FANCD2Q9BXW9 1451 aa17.52■□□□□ 0.4
CCDC78-213ENST00000482878 TIMELESSQ9UNS1 1208 aa17.51■□□□□ 0.39
CCDC78-213ENST00000482878 FYCO1Q9BQS8 1478 aa17.49■□□□□ 0.39
CCDC78-213ENST00000482878 CASKIN1Q8WXD9 1431 aa17.49■□□□□ 0.39
CCDC78-213ENST00000482878 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.47■□□□□ 0.39
CCDC78-213ENST00000482878 ABCA10Q8WWZ4 1543 aa17.47■□□□□ 0.39
CCDC78-213ENST00000482878 POLA1P09884 1462 aaPredicted RBP17.45■□□□□ 0.38
CCDC78-213ENST00000482878 EFCAB5A4FU69 1503 aa17.45■□□□□ 0.38
CCDC78-213ENST00000482878 AQRO60306 1485 aaKnown RBP eCLIP17.44■□□□□ 0.38
CCDC78-213ENST00000482878 DNMBPQ6XZF7 1577 aa17.43■□□□□ 0.38
CCDC78-213ENST00000482878 FGD6Q6ZV73 1430 aa17.43■□□□□ 0.38
CCDC78-213ENST00000482878 TOPBP1Q92547 1522 aa17.42■□□□□ 0.38
CCDC78-213ENST00000482878 CC2D2AQ9P2K1 1620 aa17.41■□□□□ 0.38
CCDC78-213ENST00000482878 PTPRKQ15262 1439 aa17.4■□□□□ 0.38
CCDC78-213ENST00000482878 FMN1Q68DA7 1419 aa17.39■□□□□ 0.37
CCDC78-213ENST00000482878 CCER2I3L3R5 266 aa17.38■□□□□ 0.37
CCDC78-213ENST00000482878 ANP32CO43423 234 aa17.38■□□□□ 0.37
CCDC78-213ENST00000482878 SNAPC4Q5SXM2 1469 aa17.38■□□□□ 0.37
CCDC78-213ENST00000482878 MSH5O43196 834 aa17.38■□□□□ 0.37
CCDC78-213ENST00000482878 TONSLQ96HA7 1378 aa17.38■□□□□ 0.37
CCDC78-213ENST00000482878 TRIM52Q96A61 297 aa17.38■□□□□ 0.37
CCDC78-213ENST00000482878 CCDC18Q5T9S5 1454 aa17.37■□□□□ 0.37
CCDC78-213ENST00000482878 MTUS2Q5JR59 1369 aa17.37■□□□□ 0.37
CCDC78-213ENST00000482878 NESP48681 1621 aa17.37■□□□□ 0.37
CCDC78-213ENST00000482878 FBLN2P98095 1184 aa17.36■□□□□ 0.37
CCDC78-213ENST00000482878 HFM1A2PYH4 1435 aa17.35■□□□□ 0.37
CCDC78-213ENST00000482878 CUL7Q14999 1698 aa17.35■□□□□ 0.37
CCDC78-213ENST00000482878 UACAQ9BZF9 1416 aa17.34■□□□□ 0.37
CCDC78-213ENST00000482878 ANO8Q9HCE9 1232 aaPredicted RBP17.33■□□□□ 0.36
CCDC78-213ENST00000482878 CTTNBP2Q8WZ74 1663 aa17.33■□□□□ 0.36
CCDC78-213ENST00000482878 DEKP35659 375 aaKnown RBP17.31■□□□□ 0.36
CCDC78-213ENST00000482878 NAIPQ13075 1403 aa17.31■□□□□ 0.36
CCDC78-213ENST00000482878 PTPN23Q9H3S7 1636 aa17.3■□□□□ 0.36
CCDC78-213ENST00000482878 TDRD9Q8NDG6 1382 aaKnown RBP17.3■□□□□ 0.36
CCDC78-213ENST00000482878 NCOA2Q15596 1464 aa17.3■□□□□ 0.36
CCDC78-213ENST00000482878 MYOM3Q5VTT5 1437 aa17.28■□□□□ 0.36
CCDC78-213ENST00000482878 URB2Q14146 1524 aaKnown RBP17.26■□□□□ 0.35
CCDC78-213ENST00000482878 GRIN2BQ13224 1484 aa17.26■□□□□ 0.35
CCDC78-213ENST00000482878 SAMD9Q5K651 1589 aa17.26■□□□□ 0.35
CCDC78-213ENST00000482878 LRRIQ1Q96JM4 1722 aa17.24■□□□□ 0.35
CCDC78-213ENST00000482878 KDM5BQ9UGL1 1544 aa17.24■□□□□ 0.35
CCDC78-213ENST00000482878 CNGB1Q14028 1251 aaPredicted RBP17.23■□□□□ 0.35
CCDC78-213ENST00000482878 CDK11AQ9UQ88 783 aaPredicted RBP17.23■□□□□ 0.35
CCDC78-213ENST00000482878 RRP7BPQ9NSQ0 103 aa17.22■□□□□ 0.35
CCDC78-213ENST00000482878 GAPVD1Q14C86 1478 aa17.22■□□□□ 0.35
CCDC78-213ENST00000482878 CHIC2Q9UKJ5 165 aa17.2■□□□□ 0.34
CCDC78-213ENST00000482878 MYT1LQ9UL68 1186 aa17.2■□□□□ 0.34
CCDC78-213ENST00000482878 ABCA5Q8WWZ7 1642 aa17.2■□□□□ 0.34
CCDC78-213ENST00000482878 EHBP1L1Q8N3D4 1523 aa17.19■□□□□ 0.34
CCDC78-213ENST00000482878 NBR1Q14596 966 aa17.19■□□□□ 0.34
CCDC78-213ENST00000482878 MAGI3Q5TCQ9 1506 aa17.19■□□□□ 0.34
CCDC78-213ENST00000482878 SUPT6HQ7KZ85 1726 aaKnown RBP17.18■□□□□ 0.34
CCDC78-213ENST00000482878 UGGT2Q9NYU1 1516 aa17.18■□□□□ 0.34
CCDC78-213ENST00000482878 THOC2Q8NI27 1593 aaKnown RBP17.18■□□□□ 0.34
CCDC78-213ENST00000482878 ARHGEF11O15085 1522 aa17.17■□□□□ 0.34
CCDC78-213ENST00000482878 WASHC2AQ641Q2 1341 aa17.17■□□□□ 0.34
CCDC78-213ENST00000482878 DENND4BO75064 1496 aaPredicted RBP17.16■□□□□ 0.34
CCDC78-213ENST00000482878 HSPA5P11021 654 aaKnown RBP17.16■□□□□ 0.34
CCDC78-213ENST00000482878 HNRNPUQ00839 825 aaKnown RBP eCLIP17.15■□□□□ 0.34
CCDC78-213ENST00000482878 CCDC136Q96JN2 1154 aa17.15■□□□□ 0.34
CCDC78-213ENST00000482878 IRX6P78412 446 aaPredicted RBP17.15■□□□□ 0.34
CCDC78-213ENST00000482878 FANCIQ9NVI1 1328 aa17.14■□□□□ 0.34
CCDC78-213ENST00000482878 LAMC3Q9Y6N6 1575 aa17.14■□□□□ 0.33
CCDC78-213ENST00000482878 SALL2Q9Y467 1007 aaPredicted RBP17.12■□□□□ 0.33
CCDC78-213ENST00000482878 TCOF1Q13428 1488 aaKnown RBP17.12■□□□□ 0.33
CCDC78-213ENST00000482878 KDM6BO15054 1643 aa17.09■□□□□ 0.33
CCDC78-213ENST00000482878 MPHOSPH9Q99550 1183 aa17.09■□□□□ 0.33
CCDC78-213ENST00000482878 EIF4G2P78344 907 aaKnown RBP eCLIP17.09■□□□□ 0.33
CCDC78-213ENST00000482878 FOXD1Q16676 465 aa17.09■□□□□ 0.33
CCDC78-213ENST00000482878 L3MBTL2Q969R5 705 aa17.08■□□□□ 0.32
CCDC78-213ENST00000482878 PDS5BQ9NTI5 1447 aa17.07■□□□□ 0.32
CCDC78-213ENST00000482878 RTN4Q9NQC3 1192 aaKnown RBP17.07■□□□□ 0.32
CCDC78-213ENST00000482878 EPRSP07814 1512 aaKnown RBP17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms